Clone BO07313 Report

Search the DGRC for BO07313

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:73
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG7946-RA
Protein status:BO07313.pep: validated full length
Sequenced Size:1459

Clone Sequence Records

BO07313.5prime Sequence

925 bp (826 high quality bases) assembled on 2005-12-04

> BO07313.5prime
GAAGTTATCAGTCGACATGGGTAAGGAAAAGGCGGCCGCCTCCTACAGCA
TTGGCGACCTGGTGTTCGCCAAGGTGAAGGGCTATCCGCCCTGGCCGGCC
AAAATCACCAAGAGCAACAACAACAAGAAGTACAATGTTTACTTCTACGG
CACGGGCGAAACGGCCAACATCAAGTTGGAGGATCTGTTCCCGTACGCCA
GCAACAAGGAGCGCTTCGCCACCGAGAAGATCATGAAGCGGGCCAAGTTC
ATCGAGGCCATCGATCAGATCGAGAGCGCCTTGCGCGGCGAGGACTCGGC
GCCCATTGATTTGCTCGACGGCGCGGAGCCAGTTGCTCCGCCCACAACTG
GTGATGGCGTCAAGACGGAGGAGCCCAAGCCGGAGCCGGGACCGGAGCCA
GCCACTGCTGCACCAGTCGCAGCAGCGGCCGAGAAGCCCAAGAAGAGCGG
CACCCGGAAGACCAAGGCACCACCGCGCCATGTGGACGGGGATAGTGAAG
CAGGCGCGGAACTAGCACCTCCGCCGGCCAAGCGAAGGGTTCCCACCGAG
GGTCTGGCTACCGCCGCAGCCATCCCCGCTGCTCCGGCTGCGGCGACCCC
CACCTCCAGCAAGAAATCAGTGAAGAAATCCAAGCCCACGGCTGCAGTAA
CTCCGATTCAGAAGCGGTCGCGGCCAGTCAATAACATCCGGAACGAGATG
CTCATGGTGTACATGCCCACAGCCAAGTGTTTGGGAATCGTTATAAACTA
CAAAAAGCCGGAGAGTTTCGAAAGCGCCGCTGCCGAGGAAGCCTGGATGG
AGAACGCCCGCAAAGAAGCCTTGGAGCTCAAACTGAAACTAGAGAGCGGC
CAAATCATCCGGAGTCATGCCCGATAGGATCGTGGTGGAGCCACACGCAG
CGAAATACCCAAGCAGGAGGCTTTG

BO07313.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-PA 1428 CG7946-RA 1..841 17..857 4205 100 Plus
CG7946-PA 1428 CG7946-RA 880..912 893..925 165 100 Plus
CG7946-PA 1428 CG7946-RA 852..879 866..893 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-RB 1884 CG7946-RB 124..1039 13..925 4490 99.6 Plus
CG7946-RA 2042 CG7946-RA 282..1197 13..925 4490 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30052795..30053464 13..682 3335 99.9 Plus
3R 32079331 3R 30053544..30053789 683..925 1080 98.8 Plus
Blast to na_te.dros performed on 2015-02-13 00:58:30 has no hits.

BO07313.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:07 Download gff for BO07313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-PA 1..912 17..925 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:03 Download gff for BO07313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-PA 1..912 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:24:54 Download gff for BO07313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 277..1197 8..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:56 Download gff for BO07313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 277..1197 8..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:56 Download gff for BO07313.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30052790..30053464 8..682 99 -> Plus
3R 30053544..30053789 683..925 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:24:54 Download gff for BO07313.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25878512..25879186 8..682 99 -> Plus
arm_3R 25879266..25879511 683..925 98   Plus

BO07313.3prime Sequence

850 bp (827 high quality bases) assembled on 2005-12-04

> BO07313.3prime
ATGGTCTAGAAAGCTTGCCTGTGGAGCCGATCCGGCTGAAGCGGCGGCCT
CCTTGGCCAAAACCAGGCTATTATATCCGCGCTCGTTCATCCCGACGCGA
AGGTTTTCGTTGATATTTTTCGTATAGGTCTTGTAGATTTTTACCTTTTC
GCAGAAGTCGATCCAAAAGTTGTCCTCGCTCTCGGGCTCCGGATTGAAGA
GACTCTTGAAGCCATCGTATATGCCAGAGGAGACCTTGCGTATGGTCTGC
GCCCTCTCCTTGAACTCCACCTCGTCGGACAGGTCCATTTTCCAGAGCTC
CAGATTGCCCACATACCGGCGAAGTCGGCGCATTATGTCCACGCACTCCG
GATTGCGCAGCAGCATCAACTTGGTGAACTCCACCTCCTTGAACTGCTCG
AGGATCTCCAGGCATTTGCCCACATTGGCGCGCCGCAGGCCCAAACATTC
GCGCAGCTGCTGGGAAAGTTGGATGAAGTCTCGCTCCATGAAGAGGGCAT
CCTCGTGCTCAATGAGCTCCTCGATGAATCGCAAAGCCTCCTGCTTGGGT
ATTTCGCTGCGTGTTGGCTCCACCACGATCCTATCGGGCATGGACTCCGG
ATTGATTTGGCCGCTCTCTAGTTTCAGTTTGAGCTCCAAGGCTTCTTTGC
GGGCGTTCTCCATCCAGGCTTCCTCGGCAGCGGCGCTTTCGAAACTCTCC
GGCTTTTTGTAGTTTATAACGATTCCCAAACACTTGGCTGTGGGCATGTA
CACCATGAGCATCTCGTTCCGGATGTTATTGACTGGCCGCGACCGCTTCT
GAATCGGAGTTACTGCAGCCGTGGGCTTGGATTCTTCACTGATTTCTGCT

BO07313.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-PA 1428 CG7946-RA 611..1425 833..19 4075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-RB 1884 CG7946-RB 723..1552 847..19 4125 99.9 Minus
CG7946-RA 2042 CG7946-RA 881..1710 847..19 4125 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30053544..30054302 777..19 3795 100 Minus
3R 32079331 3R 30053394..30053464 847..778 305 98.6 Minus
Blast to na_te.dros performed on 2015-02-12 09:58:03 has no hits.

BO07313.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:06 Download gff for BO07313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-PA 592..1428 15..850 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:01 Download gff for BO07313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-PA 592..1428 15..850 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:29 Download gff for BO07313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 877..1713 15..850 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:02 Download gff for BO07313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 877..1713 15..850 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:02 Download gff for BO07313.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30053390..30053464 778..850 97 -> Minus
3R 30053544..30054305 15..777 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:29 Download gff for BO07313.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25879112..25879186 778..850 97 -> Minus
arm_3R 25879266..25880027 15..777 99   Minus

BO07313.complete Sequence

1459 bp (1459 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630748

> BO07313.complete
GAAGTTATCAGTCGACATGGGTAAGGAAAAGGCGGCCGCCTCCTACAGCA
TTGGCGACCTGGTGTTCGCCAAGGTGAAGGGCTATCCGCCCTGGCCGGCC
AAAATCACCAAGAGCAACAACAACAAGAAGTACAATGTTTACTTCTACGG
CACGGGCGAAACGGCCAACATCAAGTTGGAGGATCTGTTCCCGTACGCCA
GCAACAAGGAGCGCTTCGCCACCGAGAAGATCATGAAGCGGGCCAAGTTC
ATCGAGGCCATCGATCAGATCGAGAGCGCCTTGCGCGGCGAGGACTCGGC
GCCCATTGATTTGCTCGACGGCGCGGAGCCAGTTGCTCCGCCCACAACTG
GTGATGGCGTCAAGACGGAGGAGCCCAAGCCGGAGCCGGGACCGGAGCCA
GCCACTGCTGCACCAGTCGCAGCAGCGGCCGAGAAGCCCAAGAAGAGCGG
CACCCGGAAGACCAAGGCACCACCGCGCCATGTGGACGGGGATAGTGAAG
CAGGCGCGGAACTAGCACCTCCGCCGGCCAAGCGAAGGGTTCCCACCGAG
GGTCTGGCTACCGCCGCAGCCATCCCCGCTGCTCCGGCTGCGGCGACCCC
CACCTCCAGCAAGAAATCAGTGAAGAAATCCAAGCCCACGGCTGCAGTAA
CTCCGATTCAGAAGCGGTCGCGGCCAGTCAATAACATCCGGAACGAGATG
CTCATGGTGTACATGCCCACAGCCAAGTGTTTGGGAATCGTTATAAACTA
CAAAAAGCCGGAGAGTTTCGAAAGCGCCGCTGCCGAGGAAGCCTGGATGG
AGAACGCCCGCAAAGAAGCCTTGGAGCTCAAACTGAAACTAGAGAGCGGC
CAAATCAATCCGGAGTCCATGCCCGATAGGATCGTGGTGGAGCCAACACG
CAGCGAAATACCCAAGCAGGAGGCTTTGCGATTCATCGAGGAGCTCATTG
AGCACGAGGATGCCCTCTTCATGGAGCGAGACTTCATCCAACTTTCCCAG
CAGCTGCGCGAATGTTTGGGCCTGCGGCGCGCCAATGTGGGCAAATGCCT
GGAGATCCTCGAGCAGTTCAAGGAGGTGGAGTTCACCAAGTTGATGCTGC
TGCGCAATCCGGAGTGCGTGGACATAATGCGCCGACTTCGCCGGTATGTG
GGCAATCTGGAGCTCTGGAAAATGGACCTGTCCGACGAGGTGGAGTTCAA
GGAGAGGGCGCAGACCATACGCAAGGTCTCCTCTGGCATATACGATGGCT
TCAAGAGTCTCTTCAATCCGGAGCCCGAGAGCGAGGACAACTTTTGGATC
GACTTCTGCGAAAAGGTAAAAATCTACAAGACCTATACGAAAAATATCAA
CGAAAACCTTCGCGTCGGGATGAACGAGCGCGGATATAATAGCCTGGTTT
TGGCCAAGGAGGCCGCCGCTTCAGCCGGATCGGCTCCACAGGCAAGCTTT
CTAGACCAT

BO07313.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-RB 1428 CG7946-PB 1..1425 17..1441 7125 100 Plus
CG7946-RA 1428 CG7946-PA 1..1425 17..1441 7125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-RB 1884 CG7946-RB 124..1552 13..1441 7130 99.9 Plus
CG7946-RA 2042 CG7946-RA 282..1710 13..1441 7130 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30053544..30054302 683..1441 3795 100 Plus
3R 32079331 3R 30052795..30053464 13..682 3335 99.9 Plus
Blast to na_te.dros performed on 2014-11-27 14:00:14 has no hits.

BO07313.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:12 Download gff for BO07313.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 1..1428 17..1445 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:20 Download gff for BO07313.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 277..1713 8..1445 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:53 Download gff for BO07313.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 286..1710 17..1443 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:12 Download gff for BO07313.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 277..1713 8..1445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:46 Download gff for BO07313.complete
Subject Subject Range Query Range Percent Splice Strand
CG7946-RA 286..1710 17..1443 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:46 Download gff for BO07313.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30052799..30053464 17..682 100 -> Plus
3R 30053544..30054302 683..1443 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:53 Download gff for BO07313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25878521..25879186 17..682 100 -> Plus
arm_3R 25879266..25880024 683..1443 99   Plus

BO07313.pep Sequence

Translation from 16 to 1459

> BO07313.pep
MGKEKAAASYSIGDLVFAKVKGYPPWPAKITKSNNNKKYNVYFYGTGETA
NIKLEDLFPYASNKERFATEKIMKRAKFIEAIDQIESALRGEDSAPIDLL
DGAEPVAPPTTGDGVKTEEPKPEPGPEPATAAPVAAAAEKPKKSGTRKTK
APPRHVDGDSEAGAELAPPPAKRRVPTEGLATAAAIPAAPAAATPTSSKK
SVKKSKPTAAVTPIQKRSRPVNNIRNEMLMVYMPTAKCLGIVINYKKPES
FESAAAEEAWMENARKEALELKLKLESGQINPESMPDRIVVEPTRSEIPK
QEALRFIEELIEHEDALFMERDFIQLSQQLRECLGLRRANVGKCLEILEQ
FKEVEFTKLMLLRNPECVDIMRRLRRYVGNLELWKMDLSDEVEFKERAQT
IRKVSSGIYDGFKSLFNPEPESEDNFWIDFCEKVKIYKTYTKNINENLRV
GMNERGYNSLVLAKEAAASAGSAPQASFLDH

BO07313.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7946-PB 475 CG7946-PB 1..475 1..475 2440 100 Plus
CG7946-PA 475 CG7946-PA 1..475 1..475 2440 100 Plus