Clone Sequence Records
BO07313.5prime Sequence
925 bp (826 high quality bases) assembled on 2005-12-04
> BO07313.5prime
GAAGTTATCAGTCGACATGGGTAAGGAAAAGGCGGCCGCCTCCTACAGCA
TTGGCGACCTGGTGTTCGCCAAGGTGAAGGGCTATCCGCCCTGGCCGGCC
AAAATCACCAAGAGCAACAACAACAAGAAGTACAATGTTTACTTCTACGG
CACGGGCGAAACGGCCAACATCAAGTTGGAGGATCTGTTCCCGTACGCCA
GCAACAAGGAGCGCTTCGCCACCGAGAAGATCATGAAGCGGGCCAAGTTC
ATCGAGGCCATCGATCAGATCGAGAGCGCCTTGCGCGGCGAGGACTCGGC
GCCCATTGATTTGCTCGACGGCGCGGAGCCAGTTGCTCCGCCCACAACTG
GTGATGGCGTCAAGACGGAGGAGCCCAAGCCGGAGCCGGGACCGGAGCCA
GCCACTGCTGCACCAGTCGCAGCAGCGGCCGAGAAGCCCAAGAAGAGCGG
CACCCGGAAGACCAAGGCACCACCGCGCCATGTGGACGGGGATAGTGAAG
CAGGCGCGGAACTAGCACCTCCGCCGGCCAAGCGAAGGGTTCCCACCGAG
GGTCTGGCTACCGCCGCAGCCATCCCCGCTGCTCCGGCTGCGGCGACCCC
CACCTCCAGCAAGAAATCAGTGAAGAAATCCAAGCCCACGGCTGCAGTAA
CTCCGATTCAGAAGCGGTCGCGGCCAGTCAATAACATCCGGAACGAGATG
CTCATGGTGTACATGCCCACAGCCAAGTGTTTGGGAATCGTTATAAACTA
CAAAAAGCCGGAGAGTTTCGAAAGCGCCGCTGCCGAGGAAGCCTGGATGG
AGAACGCCCGCAAAGAAGCCTTGGAGCTCAAACTGAAACTAGAGAGCGGC
CAAATCATCCGGAGTCATGCCCGATAGGATCGTGGTGGAGCCACACGCAG
CGAAATACCCAAGCAGGAGGCTTTG
BO07313.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7946-PA | 1428 | CG7946-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
CG7946-PA | 1428 | CG7946-RA | 880..912 | 893..925 | 165 | 100 | Plus |
CG7946-PA | 1428 | CG7946-RA | 852..879 | 866..893 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7946-RB | 1884 | CG7946-RB | 124..1039 | 13..925 | 4490 | 99.6 | Plus |
CG7946-RA | 2042 | CG7946-RA | 282..1197 | 13..925 | 4490 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30052795..30053464 | 13..682 | 3335 | 99.9 | Plus |
3R | 32079331 | 3R | 30053544..30053789 | 683..925 | 1080 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:58:30 has no hits.
BO07313.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:07 Download gff for
BO07313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-PA | 1..912 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:03 Download gff for
BO07313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-PA | 1..912 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:24:54 Download gff for
BO07313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 277..1197 | 8..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:56 Download gff for
BO07313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 277..1197 | 8..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:56 Download gff for
BO07313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30052790..30053464 | 8..682 | 99 | -> | Plus |
3R | 30053544..30053789 | 683..925 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:24:54 Download gff for
BO07313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25878512..25879186 | 8..682 | 99 | -> | Plus |
arm_3R | 25879266..25879511 | 683..925 | 98 | | Plus |
BO07313.3prime Sequence
850 bp (827 high quality bases) assembled on 2005-12-04
> BO07313.3prime
ATGGTCTAGAAAGCTTGCCTGTGGAGCCGATCCGGCTGAAGCGGCGGCCT
CCTTGGCCAAAACCAGGCTATTATATCCGCGCTCGTTCATCCCGACGCGA
AGGTTTTCGTTGATATTTTTCGTATAGGTCTTGTAGATTTTTACCTTTTC
GCAGAAGTCGATCCAAAAGTTGTCCTCGCTCTCGGGCTCCGGATTGAAGA
GACTCTTGAAGCCATCGTATATGCCAGAGGAGACCTTGCGTATGGTCTGC
GCCCTCTCCTTGAACTCCACCTCGTCGGACAGGTCCATTTTCCAGAGCTC
CAGATTGCCCACATACCGGCGAAGTCGGCGCATTATGTCCACGCACTCCG
GATTGCGCAGCAGCATCAACTTGGTGAACTCCACCTCCTTGAACTGCTCG
AGGATCTCCAGGCATTTGCCCACATTGGCGCGCCGCAGGCCCAAACATTC
GCGCAGCTGCTGGGAAAGTTGGATGAAGTCTCGCTCCATGAAGAGGGCAT
CCTCGTGCTCAATGAGCTCCTCGATGAATCGCAAAGCCTCCTGCTTGGGT
ATTTCGCTGCGTGTTGGCTCCACCACGATCCTATCGGGCATGGACTCCGG
ATTGATTTGGCCGCTCTCTAGTTTCAGTTTGAGCTCCAAGGCTTCTTTGC
GGGCGTTCTCCATCCAGGCTTCCTCGGCAGCGGCGCTTTCGAAACTCTCC
GGCTTTTTGTAGTTTATAACGATTCCCAAACACTTGGCTGTGGGCATGTA
CACCATGAGCATCTCGTTCCGGATGTTATTGACTGGCCGCGACCGCTTCT
GAATCGGAGTTACTGCAGCCGTGGGCTTGGATTCTTCACTGATTTCTGCT
BO07313.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7946-PA | 1428 | CG7946-RA | 611..1425 | 833..19 | 4075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7946-RB | 1884 | CG7946-RB | 723..1552 | 847..19 | 4125 | 99.9 | Minus |
CG7946-RA | 2042 | CG7946-RA | 881..1710 | 847..19 | 4125 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30053544..30054302 | 777..19 | 3795 | 100 | Minus |
3R | 32079331 | 3R | 30053394..30053464 | 847..778 | 305 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:58:03 has no hits.
BO07313.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:06 Download gff for
BO07313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-PA | 592..1428 | 15..850 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:01 Download gff for
BO07313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-PA | 592..1428 | 15..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:29 Download gff for
BO07313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 877..1713 | 15..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:02 Download gff for
BO07313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 877..1713 | 15..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:02 Download gff for
BO07313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30053390..30053464 | 778..850 | 97 | -> | Minus |
3R | 30053544..30054305 | 15..777 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:29 Download gff for
BO07313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25879112..25879186 | 778..850 | 97 | -> | Minus |
arm_3R | 25879266..25880027 | 15..777 | 99 | | Minus |
BO07313.complete Sequence
1459 bp (1459 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630748
> BO07313.complete
GAAGTTATCAGTCGACATGGGTAAGGAAAAGGCGGCCGCCTCCTACAGCA
TTGGCGACCTGGTGTTCGCCAAGGTGAAGGGCTATCCGCCCTGGCCGGCC
AAAATCACCAAGAGCAACAACAACAAGAAGTACAATGTTTACTTCTACGG
CACGGGCGAAACGGCCAACATCAAGTTGGAGGATCTGTTCCCGTACGCCA
GCAACAAGGAGCGCTTCGCCACCGAGAAGATCATGAAGCGGGCCAAGTTC
ATCGAGGCCATCGATCAGATCGAGAGCGCCTTGCGCGGCGAGGACTCGGC
GCCCATTGATTTGCTCGACGGCGCGGAGCCAGTTGCTCCGCCCACAACTG
GTGATGGCGTCAAGACGGAGGAGCCCAAGCCGGAGCCGGGACCGGAGCCA
GCCACTGCTGCACCAGTCGCAGCAGCGGCCGAGAAGCCCAAGAAGAGCGG
CACCCGGAAGACCAAGGCACCACCGCGCCATGTGGACGGGGATAGTGAAG
CAGGCGCGGAACTAGCACCTCCGCCGGCCAAGCGAAGGGTTCCCACCGAG
GGTCTGGCTACCGCCGCAGCCATCCCCGCTGCTCCGGCTGCGGCGACCCC
CACCTCCAGCAAGAAATCAGTGAAGAAATCCAAGCCCACGGCTGCAGTAA
CTCCGATTCAGAAGCGGTCGCGGCCAGTCAATAACATCCGGAACGAGATG
CTCATGGTGTACATGCCCACAGCCAAGTGTTTGGGAATCGTTATAAACTA
CAAAAAGCCGGAGAGTTTCGAAAGCGCCGCTGCCGAGGAAGCCTGGATGG
AGAACGCCCGCAAAGAAGCCTTGGAGCTCAAACTGAAACTAGAGAGCGGC
CAAATCAATCCGGAGTCCATGCCCGATAGGATCGTGGTGGAGCCAACACG
CAGCGAAATACCCAAGCAGGAGGCTTTGCGATTCATCGAGGAGCTCATTG
AGCACGAGGATGCCCTCTTCATGGAGCGAGACTTCATCCAACTTTCCCAG
CAGCTGCGCGAATGTTTGGGCCTGCGGCGCGCCAATGTGGGCAAATGCCT
GGAGATCCTCGAGCAGTTCAAGGAGGTGGAGTTCACCAAGTTGATGCTGC
TGCGCAATCCGGAGTGCGTGGACATAATGCGCCGACTTCGCCGGTATGTG
GGCAATCTGGAGCTCTGGAAAATGGACCTGTCCGACGAGGTGGAGTTCAA
GGAGAGGGCGCAGACCATACGCAAGGTCTCCTCTGGCATATACGATGGCT
TCAAGAGTCTCTTCAATCCGGAGCCCGAGAGCGAGGACAACTTTTGGATC
GACTTCTGCGAAAAGGTAAAAATCTACAAGACCTATACGAAAAATATCAA
CGAAAACCTTCGCGTCGGGATGAACGAGCGCGGATATAATAGCCTGGTTT
TGGCCAAGGAGGCCGCCGCTTCAGCCGGATCGGCTCCACAGGCAAGCTTT
CTAGACCAT
BO07313.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7946-RB | 1428 | CG7946-PB | 1..1425 | 17..1441 | 7125 | 100 | Plus |
CG7946-RA | 1428 | CG7946-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7946-RB | 1884 | CG7946-RB | 124..1552 | 13..1441 | 7130 | 99.9 | Plus |
CG7946-RA | 2042 | CG7946-RA | 282..1710 | 13..1441 | 7130 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30053544..30054302 | 683..1441 | 3795 | 100 | Plus |
3R | 32079331 | 3R | 30052795..30053464 | 13..682 | 3335 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:00:14 has no hits.
BO07313.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:12 Download gff for
BO07313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 1..1428 | 17..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:20 Download gff for
BO07313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 277..1713 | 8..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:53 Download gff for
BO07313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 286..1710 | 17..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:12 Download gff for
BO07313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 277..1713 | 8..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:46 Download gff for
BO07313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7946-RA | 286..1710 | 17..1443 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:46 Download gff for
BO07313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30052799..30053464 | 17..682 | 100 | -> | Plus |
3R | 30053544..30054302 | 683..1443 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:53 Download gff for
BO07313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25878521..25879186 | 17..682 | 100 | -> | Plus |
arm_3R | 25879266..25880024 | 683..1443 | 99 | | Plus |
BO07313.pep Sequence
Translation from 16 to 1459
> BO07313.pep
MGKEKAAASYSIGDLVFAKVKGYPPWPAKITKSNNNKKYNVYFYGTGETA
NIKLEDLFPYASNKERFATEKIMKRAKFIEAIDQIESALRGEDSAPIDLL
DGAEPVAPPTTGDGVKTEEPKPEPGPEPATAAPVAAAAEKPKKSGTRKTK
APPRHVDGDSEAGAELAPPPAKRRVPTEGLATAAAIPAAPAAATPTSSKK
SVKKSKPTAAVTPIQKRSRPVNNIRNEMLMVYMPTAKCLGIVINYKKPES
FESAAAEEAWMENARKEALELKLKLESGQINPESMPDRIVVEPTRSEIPK
QEALRFIEELIEHEDALFMERDFIQLSQQLRECLGLRRANVGKCLEILEQ
FKEVEFTKLMLLRNPECVDIMRRLRRYVGNLELWKMDLSDEVEFKERAQT
IRKVSSGIYDGFKSLFNPEPESEDNFWIDFCEKVKIYKTYTKNINENLRV
GMNERGYNSLVLAKEAAASAGSAPQASFLDH
BO07313.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7946-PB | 475 | CG7946-PB | 1..475 | 1..475 | 2440 | 100 | Plus |
CG7946-PA | 475 | CG7946-PA | 1..475 | 1..475 | 2440 | 100 | Plus |