Clone Sequence Records
BO07319.3prime Sequence
929 bp (771 high quality bases) assembled on 2005-12-04
> BO07319.3prime
ATGGTCTAGAAAGCTTGCGTGCCAAAGCGCATCGCTGTCTATGAAGTAAT
CCAGGTGGCGGCACACCCGATGTCGCCAGGCGACAAACAGCGGATAATCG
GGCTCATCATAGGCGTCCAGAGCTTCGTTGTAATCAAAGAAACGACCACT
TACTTTGAAGCCGCGATGCAGGCGATCCTTCATGATGGCTATGAACTCCT
TGTAGGACAGCAGGCCATCGCCATCCGCGTCGAAGATGGCGAACACGGTA
TCGATCAAGTGAGGACTTAGCTTATAGCCGGTGCAGATCTTGACAGCGCG
CGAAAATTCATCCTTTGAAATGGCTCTATCCGCCAGCGTATACATGCGCA
TGGCGATTGTGAAGTCATCCAGATTGTTGAGGAAGTGACAAAAGTCGCGG
AAATCGTGAAAGGATATGCCCTTCTCATCCTTGACCCGCTCGAGCAGGCG
CTCCAGAAAGACATCATACTCGTCGGTGGCCAAGTACGTGTAACGCAGCA
GGATTTTGGCAAAGTCCAGCTCGCTGATGACGCTGTTGCCCTTGGAGAAC
TCGTGGAACTCCAGCTCCAGCACCTCCGTCTGCAGGTTGTCCATGAAGCG
GTAGAAGTTATCGTAGTTGATCACCCCAGTGCCCCGCTTGCCGAAGAAGT
GCAGCTGCAGTGTGGTGGCCACCATGTGACGCCGCTGCAGACCCTCGCCA
TCGTTTACATAGTTCTCCAGGGGAGTGGGCGTTGCGAGCTCCTCTTCCGG
CTCTTGCTCGCCGTGCTTCTCCTTCCCAGCGCCACTGAAAATGCGCTCCA
TAATTCGCTTGGTTTGTGGATCGACATTTTGAGTGTCTTTTAAAGCGCCG
GCCAAAATGGAAATTATCACTAGAAATTCGTCCTTTGTCACGCGCTGATT
TCCATCCGTGTCGAACATGTTGAATGCGA
BO07319.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4662-PA | 1494 | CG4662-RA | 625..1491 | 885..19 | 4310 | 99.8 | Minus |
CG4662-PB | 1440 | CG4662-RB | 625..1356 | 885..154 | 3635 | 99.8 | Minus |
CG4662-PA | 1494 | CG4662-RA | 581..620 | 929..890 | 200 | 100 | Minus |
CG4662-PB | 1440 | CG4662-RB | 581..620 | 929..890 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4662-RA | 1830 | CG4662-RA | 648..1558 | 929..19 | 4495 | 99.7 | Minus |
CG4662-RD | 1911 | CG4662-RD | 854..1639 | 801..19 | 3860 | 99.5 | Minus |
CG4662-RB | 2279 | CG4662-RB | 648..1423 | 929..154 | 3820 | 99.6 | Minus |
CG4662-RD | 1911 | CG4662-RD | 648..775 | 929..802 | 595 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19852021..19852429 | 716..308 | 2030 | 99.8 | Minus |
3R | 32079331 | 3R | 19852482..19852775 | 312..19 | 1470 | 100 | Minus |
3R | 32079331 | 3R | 19851832..19851918 | 801..715 | 420 | 98.9 | Minus |
3R | 32079331 | 3R | 19851064..19851130 | 868..802 | 335 | 100 | Minus |
3R | 32079331 | 3R | 19850891..19850956 | 929..864 | 255 | 92.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:40:33 has no hits.
BO07319.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:18 Download gff for
BO07319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-PA | 582..1494 | 16..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:17 Download gff for
BO07319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-PA | 582..1494 | 16..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:23 Download gff for
BO07319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RA | 649..1558 | 19..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:18 Download gff for
BO07319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RA | 649..1558 | 19..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:18 Download gff for
BO07319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19850892..19850952 | 868..928 | 96 | -> | Minus |
3R | 19851065..19851130 | 802..867 | 100 | -> | Minus |
3R | 19851832..19851918 | 715..801 | 98 | -> | Minus |
3R | 19852023..19852425 | 312..714 | 100 | -> | Minus |
3R | 19852483..19852775 | 19..311 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:23 Download gff for
BO07319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15676614..15676674 | 868..928 | 96 | -> | Minus |
arm_3R | 15676787..15676852 | 802..867 | 100 | -> | Minus |
arm_3R | 15677554..15677640 | 715..801 | 98 | -> | Minus |
arm_3R | 15677745..15678147 | 312..714 | 100 | -> | Minus |
arm_3R | 15678205..15678497 | 19..311 | 100 | | Minus |
BO07319.5prime Sequence
953 bp (854 high quality bases) assembled on 2005-12-04
> BO07319.5prime
GAAGTTATCAGTCGACATGGCGGGTTTAGCGGCTAGATTAACGGTTAAAA
ACTGCACAATAATCGCCCAAAGGTCGAGTGTGATCGTCGGTGTTGGTCGA
TCGGCCAGATTTTCCAGTAGTTCGTCACAAATGGGCAGAATTCCGGGACA
CAAAACTCGACGTCTGCTTACTATTGTAGGCGGTAGTGCTGTTTCTTTAG
CCGCCCTGGCGGCTTTCATCAAACTACGTTCCGCGGAAAACCCTGTGAAT
GCAGTTAGCCTAAAAAGGCGCATGCGCGACGATAGCGAGCTGGAGAACGT
AAAACTGACGGCCCGGGAGCGCCGCTTCATCAAGTTTGCATCCGTGGAGT
ACGATGACCAGCTCTACATGACACCGCAGGACTTCCTAGACTCCGTTGTT
GAGCAGGAGCCCAGACCTCGCTTGAAACGACGCCAGTTGTCCAGCGATGA
GGTGGATAAATACAAGGAGAACACGCCTGCTTTGAAGAAGGGTTCCACTC
GTCTGTTTCGCAACCTAAGGGACAAGGGCATTGTCTCCTACACGGAATAT
TTGTTTTTGCTGTCCATTCTAACAAAGCCGAAATCAGGATTCCGAATCGC
ATTCAACATGTTCGACACGGATGGAAATCAGCGCGTTGACAAGGACGAAT
TTCTAGTGATAATTTCCATTTTGGCCGGCGCTTTAAAAGACACTCAAAAT
GTCGATCCACAAACCAAGCGAATTATGGAGCGCATTTTCAGTGGCGCTTG
GAAGGAGAAGCACGGCGAGCAAGAGCCGGAAGAGGAGCTCGCAACGCCCA
CTCCCCTGGAGAACTATGTAAACGATGGCGAGGGTCTGCAGCGGCGTCAC
ATGGTGGCCACCACACTGCAGCTGCACTTCTTCGGCAAGCGGGGCACTGG
GGTGATCAACTACGATNACTTCTACCGCTTCATGGACACCTGCAGACNGA
GGT
BO07319.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4662-PB | 1440 | CG4662-RB | 1..922 | 17..938 | 4591 | 99.8 | Plus |
CG4662-PA | 1494 | CG4662-RA | 1..922 | 17..938 | 4591 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4662-RA | 1830 | CG4662-RA | 62..1005 | 11..953 | 4658 | 99.6 | Plus |
CG4662-RB | 2279 | CG4662-RB | 62..1005 | 11..953 | 4658 | 99.6 | Plus |
CG4662-RC | 1754 | CG4662-RC | 62..775 | 11..724 | 3555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19847372..19847635 | 11..274 | 1305 | 99.6 | Plus |
3R | 32079331 | 3R | 19850011..19850153 | 274..416 | 715 | 100 | Plus |
3R | 32079331 | 3R | 19852021..19852165 | 810..953 | 653 | 97.9 | Plus |
3R | 32079331 | 3R | 19850209..19850320 | 417..528 | 560 | 100 | Plus |
3R | 32079331 | 3R | 19851832..19851918 | 725..811 | 435 | 100 | Plus |
3R | 32079331 | 3R | 19850870..19850956 | 576..662 | 420 | 98.9 | Plus |
3R | 32079331 | 3R | 19851064..19851130 | 658..724 | 335 | 100 | Plus |
3R | 32079331 | 3R | 19850763..19850811 | 527..575 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:40:52 has no hits.
BO07319.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:19 Download gff for
BO07319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-PA | 1..938 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:19 Download gff for
BO07319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-PA | 1..938 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:00 Download gff for
BO07319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RB | 59..1005 | 8..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:30 Download gff for
BO07319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RB | 59..1005 | 8..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:30 Download gff for
BO07319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19850012..19850153 | 275..416 | 100 | -> | Plus |
3R | 19850209..19850319 | 417..527 | 100 | -> | Plus |
3R | 19850764..19850811 | 528..575 | 100 | -> | Plus |
3R | 19850870..19850952 | 576..658 | 100 | -> | Plus |
3R | 19851065..19851130 | 659..724 | 100 | -> | Plus |
3R | 19851832..19851918 | 725..811 | 100 | -> | Plus |
3R | 19852023..19852165 | 812..953 | 97 | | Plus |
3R | 19847369..19847635 | 8..274 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:00 Download gff for
BO07319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15676486..15676533 | 528..575 | 100 | -> | Plus |
arm_3R | 15676592..15676674 | 576..658 | 100 | -> | Plus |
arm_3R | 15676787..15676852 | 659..724 | 100 | -> | Plus |
arm_3R | 15677554..15677640 | 725..811 | 100 | -> | Plus |
arm_3R | 15677745..15677887 | 812..953 | 97 | | Plus |
arm_3R | 15673091..15673357 | 8..274 | 99 | -> | Plus |
arm_3R | 15675931..15676041 | 417..527 | 100 | -> | Plus |
arm_3R | 15675734..15675875 | 275..416 | 100 | -> | Plus |
BO07319.complete Sequence
1525 bp (1525 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630749
> BO07319.complete
GAAGTTATCAGTCGACATGGCGGGTTTAGCGGCTAGATTAACGGTTAAAA
ACTGCACAATAATCGCCCAAAGGTCGAGTGTGATCGTCGGTGTTGGTCGA
TCGGCCAGATTTTCCAGTAGTTCGTCACAAATGGGCAGAATTCCGGGACA
CAAAACTCGACGTCTGCTTACTATTGTAGGCGGTAGTGCTGTTTCTTTAG
CCGCCCTGGCGGCTTTCATCAAACTACGTTCCGCGGAAAACCCTGTGAAT
GCAGTTAGCCTAAAAAGGCGCATGCGCGACGATAGCGAGCTGGAGAACGT
AAAACTGACGGCCCGGGAGCGCCGCTTCATCAAGTTTGCATCCGTGGAGT
ACGATGACCAGCTCTACATGACACCGCAGGACTTCCTAGACTCCGTTGTT
GAGCAGGAGCCCAGACCTCGCTTGAAACGACGCCAGTTGTCCAGCGATGA
GGTGGATAAATACAAGGAGAACACGCCTGCTTTGAAGAAGGGTTCCACTC
GTCTGTTTCGCAACCTAAGGGACAAGGGCATTGTCTCCTACACGGAATAT
TTGTTTTTGCTGTCCATTCTAACAAAGCCGAAATCAGGATTCCGAATCGC
ATTCAACATGTTCGACACGGATGGAAATCAGCGCGTTGACAAGGACGAAT
TTCTAGTGATAATTTCCATTTTGGCCGGCGCTTTAAAAGACACTCAAAAT
GTCGATCCACAAACCAAGCGAATTATGGAGCGCATTTTCAGTGGCGCTTG
GAAGGAGAAGCACGGCGAGCAAGAGCCGGAAGAGGAGCTCGCAACGCCCA
CTCCCCTGGAGAACTATGTAAACGATGGCGAGGGTCTGCAGCGGCGTCAC
ATGGTGGCCACCACACTGCAGCTGCACTTCTTCGGCAAGCGGGGCACTGG
GGTGATCAACTACGATAACTTCTACCGCTTCATGGACAACCTGCAGACGG
AGGTGCTGGAGCTGGAGTTCCACGAGTTCTCCAAGGGCAACAGCGTCATC
AGCGAGCTGGACTTTGCCAAAATCCTGCTGCGTTACACGTACTTGGCCAC
CGACGAGTATGATGTCTTTCTGGAGCGCCTGCTCGAGCGGGTCAAGGATG
AGAAGGGCATATCCTTTCACGATTTCCGCGACTTTTGTCACTTCCTCAAC
AATCTGGATGACTTCACAATCGCCATGCGCATGTATACGCTGGCGGATAG
AGCCATTTCAAAGGATGAATTTTCGCGCGCTGTCAAGATCTGCACCGGCT
ATAAGCTAAGTCCTCACTTGATCGATACCGTGTTCGCCATCTTCGACGCG
GATGGCGATGGCCTGCTGTCCTACAAGGAGTTCATAGCCATCATGAAGGA
TCGCCTGCATCGCGGCTTCAAAGTAAGTGGTCGTTTCTTTGATTACAACG
AAGCTCTGGACGCCTATGATGAGCCCGATTATCCGCTGTTTGTCGCCTGG
CGACATCGGGTGTGCCGCCACCTGGATTACTTCATAGACAGCGATGCGCT
TTGGCACGCAAGCTTTCTAGACCAT
BO07319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4662-RA | 1494 | CG4662-PA | 1..1491 | 17..1507 | 7455 | 100 | Plus |
CG4662-RB | 1440 | CG4662-PB | 1..1356 | 17..1372 | 6780 | 100 | Plus |
CG4662-RD | 1575 | CG4662-PD | 787..1572 | 725..1507 | 3850 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4662-RA | 1830 | CG4662-RA | 62..1558 | 11..1507 | 7470 | 99.9 | Plus |
CG4662-RB | 2279 | CG4662-RB | 62..1423 | 11..1372 | 6795 | 99.9 | Plus |
CG4662-RD | 1911 | CG4662-RD | 854..1639 | 725..1507 | 3850 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19852021..19852429 | 810..1218 | 2030 | 99.8 | Plus |
3R | 32079331 | 3R | 19852482..19852775 | 1214..1507 | 1470 | 100 | Plus |
3R | 32079331 | 3R | 19847372..19847635 | 11..274 | 1305 | 99.6 | Plus |
3R | 32079331 | 3R | 19850011..19850153 | 274..416 | 715 | 100 | Plus |
3R | 32079331 | 3R | 19850209..19850320 | 417..528 | 560 | 100 | Plus |
3R | 32079331 | 3R | 19851832..19851918 | 725..811 | 435 | 100 | Plus |
3R | 32079331 | 3R | 19850870..19850956 | 576..662 | 420 | 98.9 | Plus |
3R | 32079331 | 3R | 19851064..19851130 | 658..724 | 335 | 100 | Plus |
3R | 32079331 | 3R | 19850763..19850811 | 527..575 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:04:19 has no hits.
BO07319.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:58 Download gff for
BO07319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RA | 1..1494 | 17..1510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:01 Download gff for
BO07319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RA | 47..1546 | 8..1507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:46 Download gff for
BO07319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RA | 68..1558 | 17..1509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:58 Download gff for
BO07319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RA | 47..1546 | 8..1507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:35 Download gff for
BO07319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4662-RA | 68..1558 | 17..1509 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:35 Download gff for
BO07319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19852483..19852775 | 1215..1509 | 99 | | Plus |
3R | 19850209..19850319 | 417..527 | 100 | -> | Plus |
3R | 19850764..19850811 | 528..575 | 100 | -> | Plus |
3R | 19850870..19850952 | 576..658 | 100 | -> | Plus |
3R | 19851065..19851130 | 659..724 | 100 | -> | Plus |
3R | 19851832..19851918 | 725..811 | 100 | -> | Plus |
3R | 19852023..19852425 | 812..1214 | 100 | -> | Plus |
3R | 19847378..19847635 | 17..274 | 100 | -> | Plus |
3R | 19850012..19850153 | 275..416 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:46 Download gff for
BO07319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15673100..15673357 | 17..274 | 100 | -> | Plus |
arm_3R | 15675734..15675875 | 275..416 | 100 | -> | Plus |
arm_3R | 15675931..15676041 | 417..527 | 100 | -> | Plus |
arm_3R | 15676486..15676533 | 528..575 | 100 | -> | Plus |
arm_3R | 15676592..15676674 | 576..658 | 100 | -> | Plus |
arm_3R | 15676787..15676852 | 659..724 | 100 | -> | Plus |
arm_3R | 15677554..15677640 | 725..811 | 100 | -> | Plus |
arm_3R | 15677745..15678147 | 812..1214 | 100 | -> | Plus |
arm_3R | 15678205..15678497 | 1215..1509 | 99 | | Plus |
BO07319.pep Sequence
Translation from 16 to 1525
> BO07319.pep
MAGLAARLTVKNCTIIAQRSSVIVGVGRSARFSSSSSQMGRIPGHKTRRL
LTIVGGSAVSLAALAAFIKLRSAENPVNAVSLKRRMRDDSELENVKLTAR
ERRFIKFASVEYDDQLYMTPQDFLDSVVEQEPRPRLKRRQLSSDEVDKYK
ENTPALKKGSTRLFRNLRDKGIVSYTEYLFLLSILTKPKSGFRIAFNMFD
TDGNQRVDKDEFLVIISILAGALKDTQNVDPQTKRIMERIFSGAWKEKHG
EQEPEEELATPTPLENYVNDGEGLQRRHMVATTLQLHFFGKRGTGVINYD
NFYRFMDNLQTEVLELEFHEFSKGNSVISELDFAKILLRYTYLATDEYDV
FLERLLERVKDEKGISFHDFRDFCHFLNNLDDFTIAMRMYTLADRAISKD
EFSRAVKICTGYKLSPHLIDTVFAIFDADGDGLLSYKEFIAIMKDRLHRG
FKVSGRFFDYNEALDAYDEPDYPLFVAWRHRVCRHLDYFIDSDALWHASF
LDH
BO07319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4662-PA | 497 | CG4662-PA | 1..497 | 1..497 | 2563 | 100 | Plus |
CG4662-PD | 524 | CG4662-PD | 1..524 | 1..497 | 2514 | 94.8 | Plus |
CG4662-PE | 494 | CG4662-PE | 1..494 | 1..497 | 2396 | 95 | Plus |
CG4662-PB | 479 | CG4662-PB | 1..452 | 1..452 | 2302 | 100 | Plus |
CG4662-PF | 505 | CG4662-PF | 1..478 | 1..452 | 2265 | 94.6 | Plus |