Clone BO07319 Report

Search the DGRC for BO07319

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:73
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG4662-RA
Protein status:BO07319.pep: validated full length
Sequenced Size:1525

Clone Sequence Records

BO07319.3prime Sequence

929 bp (771 high quality bases) assembled on 2005-12-04

> BO07319.3prime
ATGGTCTAGAAAGCTTGCGTGCCAAAGCGCATCGCTGTCTATGAAGTAAT
CCAGGTGGCGGCACACCCGATGTCGCCAGGCGACAAACAGCGGATAATCG
GGCTCATCATAGGCGTCCAGAGCTTCGTTGTAATCAAAGAAACGACCACT
TACTTTGAAGCCGCGATGCAGGCGATCCTTCATGATGGCTATGAACTCCT
TGTAGGACAGCAGGCCATCGCCATCCGCGTCGAAGATGGCGAACACGGTA
TCGATCAAGTGAGGACTTAGCTTATAGCCGGTGCAGATCTTGACAGCGCG
CGAAAATTCATCCTTTGAAATGGCTCTATCCGCCAGCGTATACATGCGCA
TGGCGATTGTGAAGTCATCCAGATTGTTGAGGAAGTGACAAAAGTCGCGG
AAATCGTGAAAGGATATGCCCTTCTCATCCTTGACCCGCTCGAGCAGGCG
CTCCAGAAAGACATCATACTCGTCGGTGGCCAAGTACGTGTAACGCAGCA
GGATTTTGGCAAAGTCCAGCTCGCTGATGACGCTGTTGCCCTTGGAGAAC
TCGTGGAACTCCAGCTCCAGCACCTCCGTCTGCAGGTTGTCCATGAAGCG
GTAGAAGTTATCGTAGTTGATCACCCCAGTGCCCCGCTTGCCGAAGAAGT
GCAGCTGCAGTGTGGTGGCCACCATGTGACGCCGCTGCAGACCCTCGCCA
TCGTTTACATAGTTCTCCAGGGGAGTGGGCGTTGCGAGCTCCTCTTCCGG
CTCTTGCTCGCCGTGCTTCTCCTTCCCAGCGCCACTGAAAATGCGCTCCA
TAATTCGCTTGGTTTGTGGATCGACATTTTGAGTGTCTTTTAAAGCGCCG
GCCAAAATGGAAATTATCACTAGAAATTCGTCCTTTGTCACGCGCTGATT
TCCATCCGTGTCGAACATGTTGAATGCGA

BO07319.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4662-PA 1494 CG4662-RA 625..1491 885..19 4310 99.8 Minus
CG4662-PB 1440 CG4662-RB 625..1356 885..154 3635 99.8 Minus
CG4662-PA 1494 CG4662-RA 581..620 929..890 200 100 Minus
CG4662-PB 1440 CG4662-RB 581..620 929..890 200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4662-RA 1830 CG4662-RA 648..1558 929..19 4495 99.7 Minus
CG4662-RD 1911 CG4662-RD 854..1639 801..19 3860 99.5 Minus
CG4662-RB 2279 CG4662-RB 648..1423 929..154 3820 99.6 Minus
CG4662-RD 1911 CG4662-RD 648..775 929..802 595 98.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19852021..19852429 716..308 2030 99.8 Minus
3R 32079331 3R 19852482..19852775 312..19 1470 100 Minus
3R 32079331 3R 19851832..19851918 801..715 420 98.9 Minus
3R 32079331 3R 19851064..19851130 868..802 335 100 Minus
3R 32079331 3R 19850891..19850956 929..864 255 92.4 Minus
Blast to na_te.dros performed on 2015-02-11 23:40:33 has no hits.

BO07319.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:18 Download gff for BO07319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-PA 582..1494 16..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:17 Download gff for BO07319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-PA 582..1494 16..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:23 Download gff for BO07319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-RA 649..1558 19..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:18 Download gff for BO07319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-RA 649..1558 19..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:18 Download gff for BO07319.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19850892..19850952 868..928 96 -> Minus
3R 19851065..19851130 802..867 100 -> Minus
3R 19851832..19851918 715..801 98 -> Minus
3R 19852023..19852425 312..714 100 -> Minus
3R 19852483..19852775 19..311 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:23 Download gff for BO07319.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15676614..15676674 868..928 96 -> Minus
arm_3R 15676787..15676852 802..867 100 -> Minus
arm_3R 15677554..15677640 715..801 98 -> Minus
arm_3R 15677745..15678147 312..714 100 -> Minus
arm_3R 15678205..15678497 19..311 100   Minus

BO07319.5prime Sequence

953 bp (854 high quality bases) assembled on 2005-12-04

> BO07319.5prime
GAAGTTATCAGTCGACATGGCGGGTTTAGCGGCTAGATTAACGGTTAAAA
ACTGCACAATAATCGCCCAAAGGTCGAGTGTGATCGTCGGTGTTGGTCGA
TCGGCCAGATTTTCCAGTAGTTCGTCACAAATGGGCAGAATTCCGGGACA
CAAAACTCGACGTCTGCTTACTATTGTAGGCGGTAGTGCTGTTTCTTTAG
CCGCCCTGGCGGCTTTCATCAAACTACGTTCCGCGGAAAACCCTGTGAAT
GCAGTTAGCCTAAAAAGGCGCATGCGCGACGATAGCGAGCTGGAGAACGT
AAAACTGACGGCCCGGGAGCGCCGCTTCATCAAGTTTGCATCCGTGGAGT
ACGATGACCAGCTCTACATGACACCGCAGGACTTCCTAGACTCCGTTGTT
GAGCAGGAGCCCAGACCTCGCTTGAAACGACGCCAGTTGTCCAGCGATGA
GGTGGATAAATACAAGGAGAACACGCCTGCTTTGAAGAAGGGTTCCACTC
GTCTGTTTCGCAACCTAAGGGACAAGGGCATTGTCTCCTACACGGAATAT
TTGTTTTTGCTGTCCATTCTAACAAAGCCGAAATCAGGATTCCGAATCGC
ATTCAACATGTTCGACACGGATGGAAATCAGCGCGTTGACAAGGACGAAT
TTCTAGTGATAATTTCCATTTTGGCCGGCGCTTTAAAAGACACTCAAAAT
GTCGATCCACAAACCAAGCGAATTATGGAGCGCATTTTCAGTGGCGCTTG
GAAGGAGAAGCACGGCGAGCAAGAGCCGGAAGAGGAGCTCGCAACGCCCA
CTCCCCTGGAGAACTATGTAAACGATGGCGAGGGTCTGCAGCGGCGTCAC
ATGGTGGCCACCACACTGCAGCTGCACTTCTTCGGCAAGCGGGGCACTGG
GGTGATCAACTACGATNACTTCTACCGCTTCATGGACACCTGCAGACNGA
GGT

BO07319.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4662-PB 1440 CG4662-RB 1..922 17..938 4591 99.8 Plus
CG4662-PA 1494 CG4662-RA 1..922 17..938 4591 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4662-RA 1830 CG4662-RA 62..1005 11..953 4658 99.6 Plus
CG4662-RB 2279 CG4662-RB 62..1005 11..953 4658 99.6 Plus
CG4662-RC 1754 CG4662-RC 62..775 11..724 3555 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19847372..19847635 11..274 1305 99.6 Plus
3R 32079331 3R 19850011..19850153 274..416 715 100 Plus
3R 32079331 3R 19852021..19852165 810..953 653 97.9 Plus
3R 32079331 3R 19850209..19850320 417..528 560 100 Plus
3R 32079331 3R 19851832..19851918 725..811 435 100 Plus
3R 32079331 3R 19850870..19850956 576..662 420 98.9 Plus
3R 32079331 3R 19851064..19851130 658..724 335 100 Plus
3R 32079331 3R 19850763..19850811 527..575 245 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:40:52 has no hits.

BO07319.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:19 Download gff for BO07319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-PA 1..938 17..953 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:19 Download gff for BO07319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-PA 1..938 17..953 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:00 Download gff for BO07319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-RB 59..1005 8..953 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:30 Download gff for BO07319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4662-RB 59..1005 8..953 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:30 Download gff for BO07319.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19850012..19850153 275..416 100 -> Plus
3R 19850209..19850319 417..527 100 -> Plus
3R 19850764..19850811 528..575 100 -> Plus
3R 19850870..19850952 576..658 100 -> Plus
3R 19851065..19851130 659..724 100 -> Plus
3R 19851832..19851918 725..811 100 -> Plus
3R 19852023..19852165 812..953 97   Plus
3R 19847369..19847635 8..274 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:00 Download gff for BO07319.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15676486..15676533 528..575 100 -> Plus
arm_3R 15676592..15676674 576..658 100 -> Plus
arm_3R 15676787..15676852 659..724 100 -> Plus
arm_3R 15677554..15677640 725..811 100 -> Plus
arm_3R 15677745..15677887 812..953 97   Plus
arm_3R 15673091..15673357 8..274 99 -> Plus
arm_3R 15675931..15676041 417..527 100 -> Plus
arm_3R 15675734..15675875 275..416 100 -> Plus

BO07319.complete Sequence

1525 bp (1525 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630749

> BO07319.complete
GAAGTTATCAGTCGACATGGCGGGTTTAGCGGCTAGATTAACGGTTAAAA
ACTGCACAATAATCGCCCAAAGGTCGAGTGTGATCGTCGGTGTTGGTCGA
TCGGCCAGATTTTCCAGTAGTTCGTCACAAATGGGCAGAATTCCGGGACA
CAAAACTCGACGTCTGCTTACTATTGTAGGCGGTAGTGCTGTTTCTTTAG
CCGCCCTGGCGGCTTTCATCAAACTACGTTCCGCGGAAAACCCTGTGAAT
GCAGTTAGCCTAAAAAGGCGCATGCGCGACGATAGCGAGCTGGAGAACGT
AAAACTGACGGCCCGGGAGCGCCGCTTCATCAAGTTTGCATCCGTGGAGT
ACGATGACCAGCTCTACATGACACCGCAGGACTTCCTAGACTCCGTTGTT
GAGCAGGAGCCCAGACCTCGCTTGAAACGACGCCAGTTGTCCAGCGATGA
GGTGGATAAATACAAGGAGAACACGCCTGCTTTGAAGAAGGGTTCCACTC
GTCTGTTTCGCAACCTAAGGGACAAGGGCATTGTCTCCTACACGGAATAT
TTGTTTTTGCTGTCCATTCTAACAAAGCCGAAATCAGGATTCCGAATCGC
ATTCAACATGTTCGACACGGATGGAAATCAGCGCGTTGACAAGGACGAAT
TTCTAGTGATAATTTCCATTTTGGCCGGCGCTTTAAAAGACACTCAAAAT
GTCGATCCACAAACCAAGCGAATTATGGAGCGCATTTTCAGTGGCGCTTG
GAAGGAGAAGCACGGCGAGCAAGAGCCGGAAGAGGAGCTCGCAACGCCCA
CTCCCCTGGAGAACTATGTAAACGATGGCGAGGGTCTGCAGCGGCGTCAC
ATGGTGGCCACCACACTGCAGCTGCACTTCTTCGGCAAGCGGGGCACTGG
GGTGATCAACTACGATAACTTCTACCGCTTCATGGACAACCTGCAGACGG
AGGTGCTGGAGCTGGAGTTCCACGAGTTCTCCAAGGGCAACAGCGTCATC
AGCGAGCTGGACTTTGCCAAAATCCTGCTGCGTTACACGTACTTGGCCAC
CGACGAGTATGATGTCTTTCTGGAGCGCCTGCTCGAGCGGGTCAAGGATG
AGAAGGGCATATCCTTTCACGATTTCCGCGACTTTTGTCACTTCCTCAAC
AATCTGGATGACTTCACAATCGCCATGCGCATGTATACGCTGGCGGATAG
AGCCATTTCAAAGGATGAATTTTCGCGCGCTGTCAAGATCTGCACCGGCT
ATAAGCTAAGTCCTCACTTGATCGATACCGTGTTCGCCATCTTCGACGCG
GATGGCGATGGCCTGCTGTCCTACAAGGAGTTCATAGCCATCATGAAGGA
TCGCCTGCATCGCGGCTTCAAAGTAAGTGGTCGTTTCTTTGATTACAACG
AAGCTCTGGACGCCTATGATGAGCCCGATTATCCGCTGTTTGTCGCCTGG
CGACATCGGGTGTGCCGCCACCTGGATTACTTCATAGACAGCGATGCGCT
TTGGCACGCAAGCTTTCTAGACCAT

BO07319.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4662-RA 1494 CG4662-PA 1..1491 17..1507 7455 100 Plus
CG4662-RB 1440 CG4662-PB 1..1356 17..1372 6780 100 Plus
CG4662-RD 1575 CG4662-PD 787..1572 725..1507 3850 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4662-RA 1830 CG4662-RA 62..1558 11..1507 7470 99.9 Plus
CG4662-RB 2279 CG4662-RB 62..1423 11..1372 6795 99.9 Plus
CG4662-RD 1911 CG4662-RD 854..1639 725..1507 3850 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19852021..19852429 810..1218 2030 99.8 Plus
3R 32079331 3R 19852482..19852775 1214..1507 1470 100 Plus
3R 32079331 3R 19847372..19847635 11..274 1305 99.6 Plus
3R 32079331 3R 19850011..19850153 274..416 715 100 Plus
3R 32079331 3R 19850209..19850320 417..528 560 100 Plus
3R 32079331 3R 19851832..19851918 725..811 435 100 Plus
3R 32079331 3R 19850870..19850956 576..662 420 98.9 Plus
3R 32079331 3R 19851064..19851130 658..724 335 100 Plus
3R 32079331 3R 19850763..19850811 527..575 245 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:04:19 has no hits.

BO07319.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:58 Download gff for BO07319.complete
Subject Subject Range Query Range Percent Splice Strand
CG4662-RA 1..1494 17..1510 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:01 Download gff for BO07319.complete
Subject Subject Range Query Range Percent Splice Strand
CG4662-RA 47..1546 8..1507 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:46 Download gff for BO07319.complete
Subject Subject Range Query Range Percent Splice Strand
CG4662-RA 68..1558 17..1509 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:58 Download gff for BO07319.complete
Subject Subject Range Query Range Percent Splice Strand
CG4662-RA 47..1546 8..1507 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:35 Download gff for BO07319.complete
Subject Subject Range Query Range Percent Splice Strand
CG4662-RA 68..1558 17..1509 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:35 Download gff for BO07319.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19852483..19852775 1215..1509 99   Plus
3R 19850209..19850319 417..527 100 -> Plus
3R 19850764..19850811 528..575 100 -> Plus
3R 19850870..19850952 576..658 100 -> Plus
3R 19851065..19851130 659..724 100 -> Plus
3R 19851832..19851918 725..811 100 -> Plus
3R 19852023..19852425 812..1214 100 -> Plus
3R 19847378..19847635 17..274 100 -> Plus
3R 19850012..19850153 275..416 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:46 Download gff for BO07319.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15673100..15673357 17..274 100 -> Plus
arm_3R 15675734..15675875 275..416 100 -> Plus
arm_3R 15675931..15676041 417..527 100 -> Plus
arm_3R 15676486..15676533 528..575 100 -> Plus
arm_3R 15676592..15676674 576..658 100 -> Plus
arm_3R 15676787..15676852 659..724 100 -> Plus
arm_3R 15677554..15677640 725..811 100 -> Plus
arm_3R 15677745..15678147 812..1214 100 -> Plus
arm_3R 15678205..15678497 1215..1509 99   Plus

BO07319.pep Sequence

Translation from 16 to 1525

> BO07319.pep
MAGLAARLTVKNCTIIAQRSSVIVGVGRSARFSSSSSQMGRIPGHKTRRL
LTIVGGSAVSLAALAAFIKLRSAENPVNAVSLKRRMRDDSELENVKLTAR
ERRFIKFASVEYDDQLYMTPQDFLDSVVEQEPRPRLKRRQLSSDEVDKYK
ENTPALKKGSTRLFRNLRDKGIVSYTEYLFLLSILTKPKSGFRIAFNMFD
TDGNQRVDKDEFLVIISILAGALKDTQNVDPQTKRIMERIFSGAWKEKHG
EQEPEEELATPTPLENYVNDGEGLQRRHMVATTLQLHFFGKRGTGVINYD
NFYRFMDNLQTEVLELEFHEFSKGNSVISELDFAKILLRYTYLATDEYDV
FLERLLERVKDEKGISFHDFRDFCHFLNNLDDFTIAMRMYTLADRAISKD
EFSRAVKICTGYKLSPHLIDTVFAIFDADGDGLLSYKEFIAIMKDRLHRG
FKVSGRFFDYNEALDAYDEPDYPLFVAWRHRVCRHLDYFIDSDALWHASF
LDH

BO07319.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4662-PA 497 CG4662-PA 1..497 1..497 2563 100 Plus
CG4662-PD 524 CG4662-PD 1..524 1..497 2514 94.8 Plus
CG4662-PE 494 CG4662-PE 1..494 1..497 2396 95 Plus
CG4662-PB 479 CG4662-PB 1..452 1..452 2302 100 Plus
CG4662-PF 505 CG4662-PF 1..478 1..452 2265 94.6 Plus