Clone Sequence Records
BO07323.3prime Sequence
918 bp (816 high quality bases) assembled on 2005-12-04
> BO07323.3prime
ATGGTCTAGAAAGCTTGCGTAACGTCTGTTGTTGTTGCGACCGCGATTTC
GGCCACTGCCCCCGCCACCTCCTCCACCACTTCCACCGCCGTTGCCAGGA
CCGGAGTTGTTGATGCCACGCCGGCGACGTTGGCCACCGCCACCGCGATC
CCGGTCGTTGAAACTTTCCGCGCCATTGTTGCTAAAGCCATTGGATCCAT
TGCCATTGCCACCAGGATTGCCATTGTTCGACCAGGGTGCATTGGAAGCC
CAGGGATTGGGCCTGCCACCGGATTGGTCTCTCTCCCGTTCGCGAGCGCG
CTCCCGCTCCCTGTCGCGATCTCCTTCTCGTTCGCGATCCCGATCCCTTT
GCTCCAGCGGCGGTTCATCCACAAACTCCGTGTTGGGTTGCTGTGCTTTC
GCCGCGACCAGTGACTGCAGAAAGGGCTTTTTACATTGCATTAGTTCTCG
AACGCACACCAACTGGGCGTTATGCTGACGTGGTTCGAAGCGGGACTTCT
TGGTGGGCGGGGAGACCATCTCCCCACGTGCCTCCACTGTGGGTGATACA
GATCTGGACCTATCCCTCACTGGGACTACATCGTTGAGCTCCTCCAGCTT
GCCAGCGTCGATGTACTTGTTGAGAAACTCGGCTCCCTGACGAATAGCAG
CCATCAGTCGAGAGTCCGGGTGAACGCGAATGAACCGGTTGTACACGAGA
ACGCCGACAATGGTCTGTGGATCGAGGCCGTTGAGCATGCCGCTGGCCAG
GATGCCCTCCATTGTGTTCTCGCTGATTTGCTGGTGGTTCAGTCCATTGG
TGGTGTCCTTGGCCTCTCGGGCGGCCAGCTCCTCGTGAATGCTGAGCACG
CTGGGATCGTCCGCTCGCCGGGGTCCTGCCCAGTTCACCTGGAAATTGCG
GGGGAATGGGCTTGCTGT
BO07323.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1109-PA | 2424 | CG1109-RA | 1537..2421 | 903..19 | 4425 | 100 | Minus |
| CG1109-PB | 2424 | CG1109-RB | 1537..2421 | 903..19 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1109-RB | 2785 | CG1109-RB | 1753..2651 | 918..19 | 4475 | 99.9 | Minus |
| CG1109-RA | 2798 | CG1109-RA | 1766..2664 | 918..19 | 4475 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5664137..5665035 | 918..19 | 4450 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:49:51 has no hits.
BO07323.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:26 Download gff for
BO07323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1109-PA | 1523..2424 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:29 Download gff for
BO07323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1109-PB | 1523..2424 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:20 Download gff for
BO07323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1109-RA | 1766..2667 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:31:46 Download gff for
BO07323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1109-RA | 1766..2667 | 15..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:31:46 Download gff for
BO07323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5664137..5665038 | 15..918 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:20 Download gff for
BO07323.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1489859..1490760 | 15..918 | 99 | | Minus |
BO07323.5prime Sequence
914 bp (837 high quality bases) assembled on 2005-12-04
> BO07323.5prime
GAAGTTATCAGTCGACATGGACGTATCCCAGCCGCCACCGCAGCTGCTCA
CGGCGCCCTCGGCCCTGGCCACCAACTTCACATCGCTGCCCCCGCCGAAC
ATGGGCGGCCAGCACTACCGTCACTACCATCCGCACCATGGGTCCAACAA
GCACGGCTACAACCAGTTCAAACCCTTCATGCCCGGCGGCTTCCAGCGAC
CCTTCGGAATGTCCCAGGACGACTTCGACGGCAAGCGACTGCGAAAAAGT
GTGATGCGGAAGACAGTTGACTACAACGCGTCCATCATCAAGGCACTGGA
GAACCGATTGTACCAGCGGGACTATCGGGACCGTTTGGCTTTGCAGCCGG
ACAGCATTTATGTGCCCCATATGCTGCCGCCCTCTGCCTACTTGGACAAT
CCTTCGAACGCGGTGACCACAAGGTTCGTGAAGACGGCTACCAATAAGAT
GCGATGTCCGATTTTCACACTGGCCTGGACGCCAGAGGGCAGACGTTTGG
TAACCGGGGCCAGTTCCGGCGAGTTTACGCTATGGAACGGACTAACCTTT
AATTTCGAGACCATTCTGCAGGCCCACGACATTTCTGTGCGGACGATGGT
GTGGTCGCACAACGACAGCTGGATGGTGACCGGCGACCATGGCGGCTATG
TTAAGTACTGGCAGTCCAACATGAACAACGTGAAGATGTACCAGGCGCAC
AAGGAGGCGATTAGGGGAATAAGTTTCAGTCCCACGGACAGCAAGTTCGT
CAGCGGCAGCGACGACGGAACCCTGAGGATATGGGACTTCATGCGGTGCC
AGGAGGAGCGAGTGCTACGAGGCCACGGTGCTGACGTCAAGTGCGTGCAC
TGGCATCCACAAAAGGGAATGATCGTCAGCGGAAGCAAGGACAACCAGCC
ACCCATCAGGATTT
BO07323.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1109-PA | 2424 | CG1109-RA | 1..898 | 17..914 | 4440 | 99.7 | Plus |
| CG1109-PB | 2424 | CG1109-RB | 1..898 | 17..914 | 4440 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1109-RB | 2785 | CG1109-RB | 229..1128 | 15..914 | 4470 | 99.8 | Plus |
| CG1109-RA | 2798 | CG1109-RA | 242..1141 | 15..914 | 4470 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5660962..5661248 | 15..301 | 1435 | 100 | Plus |
| 3R | 32079331 | 3R | 5661537..5661809 | 300..572 | 1365 | 100 | Plus |
| 3R | 32079331 | 3R | 5661863..5662017 | 569..723 | 775 | 100 | Plus |
| 3R | 32079331 | 3R | 5663061..5663161 | 722..822 | 505 | 100 | Plus |
| 3R | 32079331 | 3R | 5663215..5663309 | 820..914 | 445 | 97.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:12:15 has no hits.
BO07323.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:27 Download gff for
BO07323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1109-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:30 Download gff for
BO07323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1109-PB | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:50 Download gff for
BO07323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1109-RA | 242..1141 | 15..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:38:50 Download gff for
BO07323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1109-RA | 242..1141 | 15..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:38:50 Download gff for
BO07323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5661539..5661808 | 302..571 | 100 | -> | Plus |
| 3R | 5661866..5662017 | 572..723 | 100 | -> | Plus |
| 3R | 5663063..5663160 | 724..821 | 100 | -> | Plus |
| 3R | 5663217..5663309 | 822..914 | 97 | | Plus |
| 3R | 5660962..5661248 | 15..301 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:50 Download gff for
BO07323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1486684..1486970 | 15..301 | 100 | -> | Plus |
| arm_3R | 1487261..1487530 | 302..571 | 100 | -> | Plus |
| arm_3R | 1487588..1487739 | 572..723 | 100 | -> | Plus |
| arm_3R | 1488785..1488882 | 724..821 | 100 | -> | Plus |
| arm_3R | 1488939..1489031 | 822..914 | 97 | | Plus |
BO07323.complete Sequence
2455 bp assembled on 2010-02-24
GenBank Submission: KX799647
> BO07323.complete
GAAGTTATCAGTCGACATGGACGTATCCCAGCCGCCACCGCAGCTGCTCA
CGGCGCCCTCGGCCCTGGCCACCAACTTCACATCGCTGCCCCCGCCGAAC
ATGGGCGGCCAGCACTACCGTCACTACCATCCGCACCATGGGTCCAACAA
GCACGGCTACAACCAGTTCAAACCCTTCATGCCCGGCGGCTTCCAGCGAC
CCTTCGGAATGTCCCAGGACGACTTCGACGGCAAGCGACTGCGAAAAAGT
GTGATGCGGAAGACAGTTGACTACAACGCGTCCATCATCAAGGCACTGGA
GAACCGATTGTACCAGCGGGACTATCGGGACCGTTTGGCTTTGCAGCCGG
ACAGCATTTATGTGCCCCATATGCTGCCGCCCTCTGCCTACTTGGACAAT
CCTTCGAACGCGGTGACCACAAGGTTCGTGAAGACGGCTACCAATAAGAT
GCGATGTCCGATTTTCACACTGGCCTGGACGCCAGAGGGCAGACGTTTGG
TAACCGGGGCCAGTTCCGGCGAGTTTACGCTATGGAACGGACTAACCTTT
AATTTCGAGACCATTCTGCAGGCCCACGACATTTCTGTGCGGACGATGGT
GTGGTCGCACAACGACAGCTGGATGGTGACCGGCGACCATGGCGGCTATG
TTAAGTACTGGCAGTCCAACATGAACAACGTGAAGATGTACCAGGCGCAC
AAGGAGGCGATTAGGGGAATAAGTTTCAGTCCCACGGACAGCAAGTTCGT
CAGCGGCAGCGACGACGGAACCCTGAGGATATGGGACTTCATGCGGTGCC
AGGAGGAGCGAGTGCTACGAGGCCACGGTGCTGACGTCAAGTGCGTGCAC
TGGCATCCACAAAAGGGAATGATCGTCAGCGGAAGCAAGGACAACCAGCA
ACCCATCAAGATTTGGGATCCCAAGAGCGGCATTGCCCTGGCTACTCTAC
ACGCCCACAAATCCACCGTGATGGATCTGAAGTGGAACGACAATGGCAAC
TGGCTGGTAACCGCATCCAGAGATCATCTGCTCAAGCTCTTCGACATTCG
CAACCTGCGTGAGGAGGTTCAGGTCTTCCGTGGCCACAAGAAGGAGGCCA
GCTCCGTATCCTGGCATCCCATACACGAAGGCCTCTTCTGCTCCGGCGGC
TCCGATGGCTCCATTTTGTTTTGGAATGTTGGTACCGACAAGGAGATCGG
CTGTGTGGAGACGGCACACGACAGCATCGTTTGGACTCTGGCCTGGCACC
CACTGGGTCACATTCTGTGCTCCGGCTCCAATGATCATACGATCAAATTC
TGGACGAGGAACAGACCGGGAGACCTGATGAGAGACAAATACAATCTGAA
CACATTGCCCGCCAGCCTGGCTGCTCTGGATGAGTGTGAATACGATGATG
CAATTATACCCGGAATGGGACCCGAGGACCGGGTGGAGTTTACTGAAAGT
TTAACTGCCGACAAAGGCTTTATTCCTGGCTTGGATTTGGATCCAAGCAA
AGCAATAAATGACCGCGACCGGGAGAAAAAGGTTCCCTACAGCAAGCCCA
TTCCCCGCAATTTCCAGGTGAACTGGGCAGGACCCCGGCGAGCGGACGAT
CCCAGCGTGCTCAGCATTCACGAGGAGCTGGCCGCCCGAGAGGCCAAGGA
CACCACCAATGGACTGAACCACCAGCAAATCAGCGAGAACACAATGGAGG
GCATCCTGGCCAGCGGCATGCTCAACGGCCTCGATCCACAGACCATTGTC
GGCGTTCTCGTGTACAACCGGTTCATTCGCGTTCACCCGGACTCTCGACT
GATGGCTGCTATTCGTCAGGGAGCCGAGTTTCTCAACAAGTACATCGACG
CTGGCAAGCTGGAGGAGCTCAACGATGTAGTCCCAGTGAGGGATAGGTCC
AGATCTGTATCACCCACAGTGGAGGCACGTGGGGAGATGGTCTCCCCGCC
CACCAAGAAGTCCCGCTTCGAACCACGTCAGCATAACGCCCAGTTGGTGT
GCGTTCGAGAACTAATGCAATGTAAAAAGCCCTTTCTGCAGTCACTGGTC
GCGGCGAAAGCACAGCAACCCAACACGGAGTTTGTGGATGAACCGCCGCT
GGAGCAAAGGGATCGGGATCGCGAACGAGAAGGAGATCGCGACAGGGAGC
GGGAGCGCGCTCGCGAACGGGAGAGAGACCAATCCGGTGGCAGGCCCAAT
CCCTGGGCTTCCAATGCACCCTGGTCGAACAATGGCAATCCTGGTGGCAA
TGGCAATGGATCCAATGGCTTTAGCAACAATGGCGCGGAAAGTTTCAACG
ACCGGGATCGCGGTGGCGGTGGCCAACGTCGCCGGCGTGGCATCAACAAC
TCCGGTCCTGGCAACGGCGGTGGAAGTGGTGGAGGAGGTGGCGGGGGCAG
TGGCCGAAATCGCGGTCGCAACAACAACAGACGTTACGCAAGCTTTCTAG
ACCAT
BO07323.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1109-RB | 2424 | CG1109-PB | 1..2421 | 17..2437 | 12105 | 100 | Plus |
| CG1109-RA | 2424 | CG1109-PA | 1..2421 | 17..2437 | 12105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1109-RB | 2785 | CG1109-RB | 229..2651 | 15..2437 | 12115 | 100 | Plus |
| CG1109-RA | 2798 | CG1109-RA | 242..2664 | 15..2437 | 12115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5663992..5665035 | 1394..2437 | 5220 | 100 | Plus |
| 3R | 32079331 | 3R | 5660962..5661248 | 15..301 | 1435 | 100 | Plus |
| 3R | 32079331 | 3R | 5661537..5661809 | 300..572 | 1365 | 100 | Plus |
| 3R | 32079331 | 3R | 5663419..5663652 | 949..1182 | 1170 | 100 | Plus |
| 3R | 32079331 | 3R | 5663717..5663929 | 1182..1394 | 1065 | 100 | Plus |
| 3R | 32079331 | 3R | 5661863..5662017 | 569..723 | 775 | 100 | Plus |
| 3R | 32079331 | 3R | 5663215..5663343 | 820..948 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 5663061..5663161 | 722..822 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:30:17 has no hits.
BO07323.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:50 Download gff for
BO07323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1109-RB | 229..2649 | 17..2439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:35 Download gff for
BO07323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1109-RA | 244..2664 | 17..2439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:28 Download gff for
BO07323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1109-RA | 244..2664 | 17..2439 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:28 Download gff for
BO07323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5660964..5661248 | 17..301 | 100 | -> | Plus |
| 3R | 5661539..5661808 | 302..571 | 100 | -> | Plus |
| 3R | 5661866..5662017 | 572..723 | 100 | -> | Plus |
| 3R | 5663063..5663160 | 724..821 | 100 | -> | Plus |
| 3R | 5663217..5663343 | 822..948 | 100 | -> | Plus |
| 3R | 5663419..5663652 | 949..1182 | 100 | -> | Plus |
| 3R | 5663718..5663929 | 1183..1394 | 100 | -> | Plus |
| 3R | 5663993..5665035 | 1395..2439 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:35 Download gff for
BO07323.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1486686..1486970 | 17..301 | 100 | -> | Plus |
| arm_3R | 1487261..1487530 | 302..571 | 100 | -> | Plus |
| arm_3R | 1487588..1487739 | 572..723 | 100 | -> | Plus |
| arm_3R | 1488785..1488882 | 724..821 | 100 | -> | Plus |
| arm_3R | 1488939..1489065 | 822..948 | 100 | -> | Plus |
| arm_3R | 1489141..1489374 | 949..1182 | 100 | -> | Plus |
| arm_3R | 1489440..1489651 | 1183..1394 | 100 | -> | Plus |
| arm_3R | 1489715..1490757 | 1395..2439 | 99 | | Plus |
BO07323.pep Sequence
Translation from 16 to 2455
> BO07323.pep
MDVSQPPPQLLTAPSALATNFTSLPPPNMGGQHYRHYHPHHGSNKHGYNQ
FKPFMPGGFQRPFGMSQDDFDGKRLRKSVMRKTVDYNASIIKALENRLYQ
RDYRDRLALQPDSIYVPHMLPPSAYLDNPSNAVTTRFVKTATNKMRCPIF
TLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDISVRTMVWSHND
SWMVTGDHGGYVKYWQSNMNNVKMYQAHKEAIRGISFSPTDSKFVSGSDD
GTLRIWDFMRCQEERVLRGHGADVKCVHWHPQKGMIVSGSKDNQQPIKIW
DPKSGIALATLHAHKSTVMDLKWNDNGNWLVTASRDHLLKLFDIRNLREE
VQVFRGHKKEASSVSWHPIHEGLFCSGGSDGSILFWNVGTDKEIGCVETA
HDSIVWTLAWHPLGHILCSGSNDHTIKFWTRNRPGDLMRDKYNLNTLPAS
LAALDECEYDDAIIPGMGPEDRVEFTESLTADKGFIPGLDLDPSKAINDR
DREKKVPYSKPIPRNFQVNWAGPRRADDPSVLSIHEELAAREAKDTTNGL
NHQQISENTMEGILASGMLNGLDPQTIVGVLVYNRFIRVHPDSRLMAAIR
QGAEFLNKYIDAGKLEELNDVVPVRDRSRSVSPTVEARGEMVSPPTKKSR
FEPRQHNAQLVCVRELMQCKKPFLQSLVAAKAQQPNTEFVDEPPLEQRDR
DREREGDRDRERERARERERDQSGGRPNPWASNAPWSNNGNPGGNGNGSN
GFSNNGAESFNDRDRGGGGQRRRRGINNSGPGNGGGSGGGGGGGSGRNRG
RNNNRRYASFLDH
BO07323.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1109-PB | 807 | CG1109-PB | 1..807 | 1..807 | 4376 | 100 | Plus |
| CG1109-PA | 807 | CG1109-PA | 1..807 | 1..807 | 4376 | 100 | Plus |
| wds-PB | 361 | CG17437-PB | 31..357 | 108..429 | 293 | 26.9 | Plus |
| wds-PA | 361 | CG17437-PA | 31..357 | 108..429 | 293 | 26.9 | Plus |
| Ciao1-PA | 335 | CG12797-PA | 17..331 | 149..429 | 230 | 26.2 | Plus |
