Clone Sequence Records
BO07324.3prime Sequence
914 bp (852 high quality bases) assembled on 2005-12-04
> BO07324.3prime
ATGGTCTAGAAAGCTTGCCTCCTTCTTCTCGTGATCTTCATCGGGATCTT
CTTCTGTGACCAAGCAATCGCCGCAGAAAATAGAGTACATGATGAGCGAT
AAGAATCCCAATGGCAGGCCGAAGATGACAGTGGTCAGCACGGGATTTCC
CAGCCACATATCCCTTAATGCTCTTCGCACTTCGAACAGTGCCCGATTCA
AACGTACAAAGTACGTATCTCCTCCATAGGCAATGGCACTTTCGTTGCGG
ATGGATTCTAGGAAAAGGTGCAGTGCCTGTGGAGTCATTTGCATTGGATC
ATCTTCGGGTATGAAGTGGTGTTGGGTGCTCGAATTAATCGCTATCAAGT
GAGGCGTGGGCAGTTGATCCAAGATAATGGAATGTGCTATTGATGGCTCG
CCAATCCATCCAAATTGGAATTTGTCATGATATCGCGCCCTATGCTTTCT
TATCACGCCCTCCACCATGTCCCGAAACTCCAGCTCATGCGTGGCTATCT
GATTGAGCTTATCCTCCTGTACCACAGCCAAAACCAAGTACTTGTTTGTC
TTGAGCAGCTGGTGGATGTTGAACCGAGTGACCTTTGGGAAGAGTGTGAA
CCTCTCCACGTTCACCCATTGGAAAACGGTTTCGTTCACTTCATTGGGGT
CCATTTCGTGCGCCAAATGCCCATGCGGATAGAAGTGGTGCTGCTCTTCT
TTGTAGACAATCACCGCTGGCAGTTTCTCAAAGTCAAAGTGTTGGGCAGC
GATATCCTCGCTGGTGGCATAGAAAAATCCATGCTCTTGGTAACCTTCAG
CTGCAGCATAGTATGTATCCCACACCACGCCCTCCTGTTGGCCTACGAAA
ATGAAAATATCGTATGGGATCCCTTTAGCATGTCCACACTCTCCGTTCGC
GTGACCAGCTGAAC
BO07324.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5027-PA | 1293 | CG5027-RA | 452..1290 | 857..19 | 4195 | 100 | Minus |
CG5027-PA | 1293 | CG5027-RA | 394..454 | 914..854 | 305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5027-RA | 1862 | CG5027-RA | 595..1491 | 914..19 | 4460 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16229815..16230324 | 914..406 | 2500 | 99.8 | Minus |
3L | 28110227 | 3L | 16230381..16230768 | 406..19 | 1940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:12:19 has no hits.
BO07324.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:28 Download gff for
BO07324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-PA | 394..1293 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:32 Download gff for
BO07324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-PA | 394..1293 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:52 Download gff for
BO07324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 595..1496 | 14..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:38:58 Download gff for
BO07324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 595..1496 | 14..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:38:58 Download gff for
BO07324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16229815..16230324 | 406..914 | 99 | -> | Minus |
3L | 16230382..16230773 | 14..405 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:52 Download gff for
BO07324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16222915..16223424 | 406..914 | 99 | -> | Minus |
arm_3L | 16223482..16223873 | 14..405 | 99 | | Minus |
BO07324.5prime Sequence
858 bp (848 high quality bases) assembled on 2005-12-04
> BO07324.5prime
GAAGTTATCAGTCGACATGTCGCCAAATTCTATGTGGATTTTCGGCCTCA
TAAGTGCTCTGCTTCTGACTCTGGGTTCGACGGGGCTATCCTCGAAGGTT
TTGGAGCTCAGTGACCGGTTCATCGATGTGCGACACGAGGGCCAATGGTT
GGTCATGTTCTATGCCCCGTGGTGCGGCTACTGCAAGAAAACGGAGCCCA
TTTTTGCTCTGGTGGCTCAGGCTTTGCATGCCACCAACGTTCGAGTGGGT
CGCCTAGATTGTACCAAGTATCCGGCGGCGGCGAAGGAGTTCAAGGTTCG
TGGCTATCCCACCATTATGTTCATCAAGGGCAACATGGAGTTCACCTACA
ACGGAGACCGCGGTCGCGATGAGCTGGTGGATTATGCCTTAAGGATGTCT
GGGCCTCCAGTTCAGCTGGTCACGCGAACGGAGAGTGTGGACATGCTAAA
GGGATCCCATACGATATTTTTCATTTTCGTAGGCCAACAGGAGGGCGTGG
TGTGGGATACATACTATGCTGCAGCTGAAGGTTACCAAGAGCATGGATTT
TTCTATGCCACCAGCGAGGATATCGCTGCCCAACACTTTGACTTTGAGAA
ACTGCCAGCGGTGATTGTCTACAAAGAAGAGCAGCACCACTTCTATCCGC
ATGGGCATTTGGCGCACGAAATGGACCCCAATGAAGTGAACGAAACCGTT
TTCCAATGGGTGAACGTGGAGAGGTTCACACTCTTCCCAAAGGTCACTCG
GTTCAACATCCACCAGCTGCTCAAGACAAACAAGTACTTGGTTTTGGCTG
TGGTACAGGAGGATAAGCTCAATCAGATAGCCACGCATGAGCTGGAGTTT
CGGGACAT
BO07324.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5027-PA | 1293 | CG5027-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:12:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5027-RA | 1862 | CG5027-RA | 202..1043 | 17..858 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:12:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16229699..16230263 | 294..858 | 2825 | 100 | Plus |
3L | 28110227 | 3L | 16229404..16229645 | 56..297 | 1210 | 100 | Plus |
3L | 28110227 | 3L | 16229301..16229340 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:12:23 has no hits.
BO07324.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:29 Download gff for
BO07324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:33 Download gff for
BO07324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:54 Download gff for
BO07324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 199..1043 | 10..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:15 Download gff for
BO07324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 199..1043 | 10..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:15 Download gff for
BO07324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16229298..16229340 | 10..56 | 91 | -> | Plus |
3L | 16229405..16229643 | 57..295 | 100 | -> | Plus |
3L | 16229701..16230263 | 296..858 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:54 Download gff for
BO07324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16222398..16222440 | 10..56 | 91 | -> | Plus |
arm_3L | 16222505..16222743 | 57..295 | 100 | -> | Plus |
arm_3L | 16222801..16223363 | 296..858 | 100 | | Plus |
BO07324.complete Sequence
1324 bp (1324 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630751
> BO07324.complete
GAAGTTATCAGTCGACATGTCGCCAAATTCTATGTGGATTTTCGGCCTCA
TAAGTGCTCTGCTTCTGACTCTGGGTTCGACGGGGCTATCCTCGAAGGTT
TTGGAGCTCAGTGACCGGTTCATCGATGTGCGACACGAGGGCCAATGGTT
GGTCATGTTCTATGCCCCGTGGTGCGGCTACTGCAAGAAAACGGAGCCCA
TTTTTGCTCTGGTGGCTCAGGCTTTGCATGCCACCAACGTTCGAGTGGGT
CGCCTAGATTGTACCAAGTATCCGGCGGCGGCGAAGGAGTTCAAGGTTCG
TGGCTATCCCACCATTATGTTCATCAAGGGCAACATGGAGTTCACCTACA
ACGGAGACCGCGGTCGCGATGAGCTGGTGGATTATGCCTTAAGGATGTCT
GGGCCTCCAGTTCAGCTGGTCACGCGAACGGAGAGTGTGGACATGCTAAA
GGGATCCCATACGATATTTTTCATTTTCGTAGGCCAACAGGAGGGCGTGG
TGTGGGATACATACTATGCTGCAGCTGAAGGTTACCAAGAGCATGGATTT
TTCTATGCCACCAGCGAGGATATCGCTGCCCAACACTTTGACTTTGAGAA
ACTGCCAGCGGTGATTGTCTACAAAGAAGAGCAGCACCACTTCTATCCGC
ATGGGCATTTGGCGCACGAAATGGACCCCAATGAAGTGAACGAAACCGTT
TTCCAATGGGTGAACGTGGAGAGGTTCACACTCTTCCCAAAGGTCACTCG
GTTCAACATCCACCAGCTGCTCAAGACAAACAAGTACTTGGTTTTGGCTG
TGGTACAGGAGGATAAGCTCAATCAGATAGCCACGCATGAGCTGGAGTTT
CGGGACATGGTGGAGGGCGTGATAAGAAAGCATAGGGCGCGATATCATGA
CAAATTCCAATTTGGATGGATTGGCGAGCCATCAATAGCACATTCCATTA
TCTTGGATCAACTGCCCACGCCTCACTTGATAGCGATTAATTCGAGCACC
CAACACCACTTCATACCCGAAGATGATCCAATGCAAATGACTCCACAGGC
ACTGCACCTTTTCCTAGAATCCATCCGCAACGAAAGTGCCATTGCCTATG
GAGGAGATACGTACTTTGTACGTTTGAATCGGGCACTGTTCGAAGTGCGA
AGAGCATTAAGGGATATGTGGCTGGGAAATCCCGTGCTGACCACTGTCAT
CTTCGGCCTGCCATTGGGATTCTTATCGCTCATCATGTACTCTATTTTCT
GCGGCGATTGCTTGGTCACAGAAGAAGATCCCGATGAAGATCACGAGAAG
AAGGAGGCAAGCTTTCTAGACCAT
BO07324.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5027-RA | 1293 | CG5027-PA | 1..1290 | 17..1306 | 6450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5027-RA | 1862 | CG5027-RA | 202..1491 | 17..1306 | 6450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16229699..16230324 | 294..919 | 3130 | 100 | Plus |
3L | 28110227 | 3L | 16230381..16230768 | 919..1306 | 1940 | 100 | Plus |
3L | 28110227 | 3L | 16229404..16229645 | 56..297 | 1210 | 100 | Plus |
3L | 28110227 | 3L | 16229301..16229340 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:57:22 has no hits.
BO07324.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:01 Download gff for
BO07324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 1..1293 | 17..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:04 Download gff for
BO07324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 193..1490 | 10..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:16 Download gff for
BO07324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 202..1491 | 17..1308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:01 Download gff for
BO07324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 193..1490 | 10..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:39 Download gff for
BO07324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5027-RA | 202..1491 | 17..1308 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:39 Download gff for
BO07324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16229301..16229340 | 17..56 | 100 | -> | Plus |
3L | 16229405..16229643 | 57..295 | 100 | -> | Plus |
3L | 16229701..16230324 | 296..919 | 100 | -> | Plus |
3L | 16230382..16230768 | 920..1308 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:16 Download gff for
BO07324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16222401..16222440 | 17..56 | 100 | -> | Plus |
arm_3L | 16222505..16222743 | 57..295 | 100 | -> | Plus |
arm_3L | 16222801..16223424 | 296..919 | 100 | -> | Plus |
arm_3L | 16223482..16223868 | 920..1308 | 99 | | Plus |
BO07324.pep Sequence
Translation from 16 to 1324
> BO07324.pep
MSPNSMWIFGLISALLLTLGSTGLSSKVLELSDRFIDVRHEGQWLVMFYA
PWCGYCKKTEPIFALVAQALHATNVRVGRLDCTKYPAAAKEFKVRGYPTI
MFIKGNMEFTYNGDRGRDELVDYALRMSGPPVQLVTRTESVDMLKGSHTI
FFIFVGQQEGVVWDTYYAAAEGYQEHGFFYATSEDIAAQHFDFEKLPAVI
VYKEEQHHFYPHGHLAHEMDPNEVNETVFQWVNVERFTLFPKVTRFNIHQ
LLKTNKYLVLAVVQEDKLNQIATHELEFRDMVEGVIRKHRARYHDKFQFG
WIGEPSIAHSIILDQLPTPHLIAINSSTQHHFIPEDDPMQMTPQALHLFL
ESIRNESAIAYGGDTYFVRLNRALFEVRRALRDMWLGNPVLTTVIFGLPL
GFLSLIMYSIFCGDCLVTEEDPDEDHEKKEASFLDH
BO07324.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5027-PA | 430 | CG5027-PA | 1..430 | 1..430 | 2294 | 100 | Plus |
Pdi-PE | 496 | CG6988-PE | 48..196 | 45..190 | 191 | 28.2 | Plus |
Pdi-PA | 496 | CG6988-PA | 48..196 | 45..190 | 191 | 28.2 | Plus |
CG9302-PA | 510 | CG9302-PA | 395..509 | 25..139 | 182 | 38.7 | Plus |
CaBP1-PB | 433 | CG5809-PB | 148..261 | 20..124 | 177 | 37.4 | Plus |
CG9302-PA | 510 | CG9302-PA | 266..380 | 21..131 | 163 | 32.8 | Plus |