Clone Sequence Records
BO07332.3prime Sequence
899 bp (814 high quality bases) assembled on 2005-12-04
> BO07332.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCTTATTCTTCTTGCCGTCCTTGGCCA
ATTCCAGGCCCAGGATGCACTTGGGCGGCACCTTGTACGTTTCCGTGAGC
AGCGTGTGCACAAATCGCACCTGGTTGCCCTGGATTTGCAGCTGCTCGTG
CTTTTGGTGCGGCAGTTTCACCACACTGGTGCTGGCGGCGGCTCCCTGCT
TGCACAGCTTGATGAACTCGGCCAGGATGATGCCGTACGCCTCGATGTTG
CTGACCAGCGTCACCTTCTTGTTGCCCGATCGCGTGGCCAGGGACATCTG
GATGAGGGGCTTCCCGCTCGTATCTTTGCCGCTGCACATCTGGTAGGAGT
GCTCCATCTTGCTGGTGATGAGGGAGCACATCTCGCTTAACGAAACCTCT
CTGTTACCATACAGCTCGATCAGAGTGTCGTCGGGGCGCACCAGCTTGGT
CAGCGGATGGAGGAGACCATGTTTGCTCACGTACTCCCGCACAATCTTCT
TGATCTGACCCGCCGGGATTCCCTCGCCGCGCTTGTAATTCAGCTTGGTG
AAGAAGGCCGCCGTAACATCGGTCACTATGTACATCTCCTTCAGCTCGGA
GTGGAACAGGGGCGTCTCGGACGCCGCTCCATTAGCTTCGCTTGCCTTGA
CATCGGTTATAAAGTTCACCACTTCGGGGTGCTCCAGGTCCACAGATGTG
ATTTTATCCACTCCCTTGCTCTCCTCCCGCACCACAATGAATCCTTGGTC
CACCATCTCGGCCAGAAAGTTGGAGAGCTTTTTGTAGCGCGTCTTCTTCA
GGTCGATTTGCTCCGTGGCCTCCGTGACCACATAGAGTCTGTAGAAATTG
CTCGTCAGCAGAGGCAGGGGCAGCTTCTTTCCATGGTTTTTCAAGGCGG
BO07332.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31426-PA | 1692 | ligatin-RA | 809..1689 | 899..19 | 4380 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ligatin-RA | 1841 | CG31426-RA | 914..1794 | 899..19 | 4390 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29149943..29150823 | 19..899 | 4390 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:22:33 has no hits.
BO07332.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:42 Download gff for
BO07332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31426-PA | 809..1692 | 16..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:51 Download gff for
BO07332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31426-PA | 809..1692 | 16..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:57 Download gff for
BO07332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 914..1799 | 13..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:59 Download gff for
BO07332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 914..1799 | 13..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:59 Download gff for
BO07332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29149938..29150823 | 13..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:57 Download gff for
BO07332.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24975660..24976545 | 13..899 | 99 | | Plus |
BO07332.5prime Sequence
810 bp (808 high quality bases) assembled on 2005-12-04
> BO07332.5prime
GAAGTTATCAGTCGACATGTTTCTCAAGCCGTACAGACCCAAGAGCAGTG
CTGCCCTCAAGGGATCCGATAGCAAGAAGTTCCGGCAGCGCGTGGAGGCG
GCGTTCCCCCATGTGTCCGTGGATCAGCTGGTGCCGGCGAAGGCGGCGGT
GACCCAGGTGAAGATCCTAACGCACGGCGGTGTTCAGAGCATGGTCTACT
GCGTGGACAAGTTGCCTTTGTTCTTCGAGCTGGACGGCGGTCAACTTGTG
CCCACCCTGTACACCCTGTGGATCGTTCCGGACATCCTGCCCTATTTCAC
CACCCACGAGGGTGTGTTACCCAAGCTGACGAACGGAGCGGATCTCATGC
TGCCCGGAGTGGTGCCCCTGGGCGTGGGACTGAGCATGTACGGGCACTTC
AAAAAGGGACAGTTGATGGCCGTAAACCTCACAAACAACAAATCTGCGGT
GGGCGTGGGCCAGTTGGCTCGCTCCAGCGATGAACTGTACATGTGCGGAG
GTCACGGTGTGGCCATCAAGATGCTCCACCTCTTTGGGGACAAGCTCTGG
TCGCATGAGCCCAGTCTGGTGCAGCAAATCCCGCTGGTCAAGACAAAGGC
CTTGTCTGGCGAGGATTTCCCTGCTCTTGGGTCTGAGACGGAAAGGAGAA
AGACCGCCAGCCCAGCTACTCCCGCTCCTGTGACCTTCGCTACGGTGGCC
CAAACCGAGGAACTGGAAACGGAAACTGCTGCTCTGACCTTGGAAAGCCA
GGAAGCTCCCGAGTCCGACGAAGAAGCCGTGGAGGAAGCCTCACCAGAAC
TTATACTCAA
BO07332.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31426-PA | 1692 | ligatin-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ligatin-RA | 1841 | CG31426-RA | 106..899 | 17..810 | 3970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29151290..29151689 | 416..17 | 2000 | 100 | Minus |
| 3R | 32079331 | 3R | 29150838..29151231 | 810..417 | 1970 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:41:51 has no hits.
BO07332.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:43 Download gff for
BO07332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31426-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:52 Download gff for
BO07332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31426-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:05 Download gff for
BO07332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 101..897 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:28:31 Download gff for
BO07332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 101..897 | 9..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:28:31 Download gff for
BO07332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29150840..29151231 | 417..808 | 100 | <- | Minus |
| 3R | 29151290..29151694 | 9..416 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:05 Download gff for
BO07332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24976562..24976953 | 417..808 | 100 | <- | Minus |
| arm_3R | 24977012..24977416 | 9..416 | 99 | | Minus |
BO07332.complete Sequence
1723 bp (1723 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ630753
> BO07332.complete
GAAGTTATCAGTCGACATGTTTCTCAAGCCGTACAGACCCAAGAGCAGTG
CTGCCCTCAAGGGATCCGATAGCAAGAAGTTCCGGCAGCGCGTGGAGGCG
GCGTTCCCCCATGTGTCCGTGGATCAGCTGGTGCCGGCGAAGGCGGCGGT
GACCCAGGTGAAGATCCTAACGCACGGCGGTGTTCAGAGCATGGTCTACT
GCGTGGACAAGTTGCCTTTGTTCTTCGAGCTGGACGGCGGTCAACTTGTG
CCCACCCTGTACACCCTGTGGATCGTTCCGGACATCCTGCCCTATTTCAC
CACCCACGAGGGTGTGTTACCCAAGCTGACGAACGGAGCGGATCTCATGC
TGCCCGGAGTGGTGCCCCTGGGCGTGGGACTGAGCATGTACGGGCACTTC
AAAAAGGGACAGTTGATGGCCGTAAACCTCACAAACAACAAATCTGCGGT
GGGCGTGGGCCAGTTGGCTCGCTCCAGCGATGAACTGTACATGTGCGGAG
GTCACGGTGTGGCCATCAAGATGCTCCACCTCTTTGGGGACAAGCTCTGG
TCGCATGAGCCCAGTCTGGTGCAGCAAATCCCGCTGGTCAAGACAAAGGC
CTTGTCTGGCGAGGATTTCCCTGCTCTTGGGTCTGAGACGGAAAGGAGAA
AGACCGCCAGCCCAGCTACTCCCGCTCCTGTGACCTTCGCTACGGTGGCC
CAAACCGAGGAACTGGAAACGGAAACTGCTGCTCTGACCTTGGAAAGCCA
GGAAGCTCCCGAGTCCGACGAAGAAGCCGTGGAGGAAGCCTCACCAGAAC
TTATACTCAAGAATGCCTTCCTCTCCGCCTTGAAAAACCATGGAAAGAAG
CTGCCCCTGCCTCTGCTGACGAGCAATTTCTACAGACTCTATGTGGTCAC
GGAGGCCACGGAGCAAATCGACCTGAAGAAGACGCGCTACAAAAAGCTCT
CCAACTTTCTGGCCGAGATGGTGGACCAAGGATTCATTGTGGTGCGGGAG
GAGAGCAAGGGAGTGGATAAAATCACATCTGTGGACCTGGAGCACCCCGA
AGTGGTGAACTTTATAACCGATGTCAAGGCAAGCGAAGCTAATGGAGCGG
CGTCCGAGACGCCCCTGTTCCACTCCGAGCTGAAGGAGATGTACATAGTG
ACCGATGTTACGGCGGCCTTCTTCACCAAGCTGAATTACAAGCGCGGCGA
GGGAATCCCGGCGGGTCAGATCAAGAAGATTGTGCGGGAGTACGTGAGCA
AACATGGTCTCCTCCATCCGCTGACCAAGCTGGTGCGCCCCGACGACACT
CTGATCGAGCTGTATGGTAACAGAGAGGTTTCGTTAAGCGAGATGTGCTC
CCTCATCACCAGCAAGATGGAGCACTCCTACCAGATGTGCAGCGGCAAAG
ATACGAGCGGGAAGCCCCTCATCCAGATGTCCCTGGCCACGCGATCGGGC
AACAAGAAGGTGACGCTGGTCAGCAACATCGAGGCGTACGGCATCATCCT
GGCCGAGTTCATCAAGCTGTGCAAGCAGGGAGCCGCCGCCAGCACCAGTG
TGGTGAAACTGCCGCACCAAAAGCACGAGCAGCTGCAAATCCAGGGCAAC
CAGGTGCGATTTGTGCACACGCTGCTCACGGAAACGTACAAGGTGCCGCC
CAAGTGCATCCTGGGCCTGGAATTGGCCAAGGACGGCAAGAAGAATAAGA
AGAAGGCAAGCTTTCTAGACCAT
BO07332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ligatin-RA | 1692 | CG31426-PA | 1..1689 | 17..1705 | 8430 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ligatin-RA | 1841 | CG31426-RA | 106..1794 | 17..1705 | 8430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29149943..29151231 | 1705..417 | 6430 | 99.9 | Minus |
| 3R | 32079331 | 3R | 29151290..29151689 | 416..17 | 2000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:57:42 has no hits.
BO07332.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:22 Download gff for
BO07332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 1..1692 | 17..1708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:46 Download gff for
BO07332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 97..1795 | 9..1711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:09 Download gff for
BO07332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 112..1794 | 23..1707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:22 Download gff for
BO07332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 97..1795 | 9..1711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:05 Download gff for
BO07332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ligatin-RA | 112..1794 | 23..1707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:05 Download gff for
BO07332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29149940..29151231 | 417..1707 | 99 | <- | Minus |
| 3R | 29151290..29151683 | 23..416 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:09 Download gff for
BO07332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24975662..24976953 | 417..1707 | 99 | <- | Minus |
| arm_3R | 24977012..24977405 | 23..416 | 100 | | Minus |
BO07332.pep Sequence
Translation from 16 to 1723
> BO07332.pep
MFLKPYRPKSSAALKGSDSKKFRQRVEAAFPHVSVDQLVPAKAAVTQVKI
LTHGGVQSMVYCVDKLPLFFELDGGQLVPTLYTLWIVPDILPYFTTHEGV
LPKLTNGADLMLPGVVPLGVGLSMYGHFKKGQLMAVNLTNNKSAVGVGQL
ARSSDELYMCGGHGVAIKMLHLFGDKLWSHEPSLVQQIPLVKTKALSGED
FPALGSETERRKTASPATPAPVTFATVAQTEELETETAALTLESQEAPES
DEEAVEEASPELILKNAFLSALKNHGKKLPLPLLTSNFYRLYVVTEATEQ
IDLKKTRYKKLSNFLAEMVDQGFIVVREESKGVDKITSVDLEHPEVVNFI
TDVKASEANGAASETPLFHSELKEMYIVTDVTAAFFTKLNYKRGEGIPAG
QIKKIVREYVSKHGLLHPLTKLVRPDDTLIELYGNREVSLSEMCSLITSK
MEHSYQMCSGKDTSGKPLIQMSLATRSGNKKVTLVSNIEAYGIILAEFIK
LCKQGAAASTSVVKLPHQKHEQLQIQGNQVRFVHTLLTETYKVPPKCILG
LELAKDGKKNKKKASFLDH
BO07332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ligatin-PA | 563 | CG31426-PA | 1..563 | 1..563 | 2866 | 100 | Plus |
