Clone Sequence Records
BO07333.3prime Sequence
885 bp (765 high quality bases) assembled on 2005-12-04
> BO07333.3prime
ATGGTCTAGAAAGCTTGCCATGGACTCAGTTCCCTGCTCCAAAACCGCCT
GCCAATCGATGCCTTTGAAGAATGGATGAGCCTGCAATTGGTCGTAGTCC
AAACGTAGCTCCGGAGAAAGCTGCAGCAGTTGCTCCAGCAGATCCTTGGC
ATGATCGGAAATCTCCAACGACTCACTAGGATACTGAACACAACCATAGA
GGTCCAGTTGCCCGGGATGCGTGACTTTGTAGGGAACTCCCAGCAGAAGC
TGATAGAGCACCACGCCGTAGCTCCACCAGTCCGAGCGAAAAGTGAGCGG
TCTTTCTGGTGCCACAAAGTGATTAGCCACTGCCTCCAAGTTCAGTGCCT
TGTGCACATAGTTGTCGTCCGAGGTTAGACCCTCGTTCTGATAGAAATAC
GTCAGGAGCAGCTGTCCCTTGGCGCCCAGTAAAATGTTGCCCATGTGCAG
ATCGCGCAGAATAACGCCCTTGCCGTGCAGACTGTGTATGGCGATGGCCA
GTTCGCAAGCCCACTGACGCAGGCACTGCTCCGGAATGGGTTTACTTCGG
ATGCGATTTTGATCCACCTTTTTATTTCTTTTGGGTGTAACGACTCCCGC
TTGCAAATTGCTCAGCGTGTTTGTTACGGACTTTAAAAGCTGCTGGGAGC
TGCGAACCAAATCGCTGACATCGCTGTCCGAAGTCAGAGGTGGCTCCTCT
GCCTCCTTCTCCTCCGGCTCCTGGTCCGAGGGAAAAAGCTCTCCATAATT
GACACTCTTACTACTCGTGGGCGTGTAGCTCTGCAGGTAATCGTACAACA
TGCCGCCCTCCGCCTGCCGCAGTAGCAGAAAAATCTTCTGCTCCGACTGN
AAGTAGGCCAGCAGTTGGACCATGTAAGGCACCTG
BO07333.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-PA | 2046 | CG7156-RA | 1177..2043 | 885..19 | 4316 | 99.8 | Minus |
| CG7156-PB | 1812 | CG7156-RB | 943..1809 | 885..19 | 4316 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-RB | 2542 | CG7156-RB | 1201..2067 | 885..19 | 4324 | 99.9 | Minus |
| CG7156-RA | 2619 | CG7156-RA | 1278..2144 | 885..19 | 4324 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18240170..18240820 | 235..885 | 3244 | 99.8 | Plus |
| 3R | 32079331 | 3R | 18239895..18240110 | 19..234 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:58:23 has no hits.
BO07333.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:44 Download gff for
BO07333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-PB | 943..1812 | 16..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:54 Download gff for
BO07333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-PB | 943..1812 | 16..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:34 Download gff for
BO07333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 1303..2173 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:26 Download gff for
BO07333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 1278..2148 | 15..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:26 Download gff for
BO07333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18239890..18240110 | 15..234 | 99 | <- | Plus |
| 3R | 18240170..18240820 | 235..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:34 Download gff for
BO07333.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14065612..14065832 | 15..234 | 99 | <- | Plus |
| arm_3R | 14065892..14066542 | 235..885 | 99 | | Plus |
BO07333.5prime Sequence
844 bp (843 high quality bases) assembled on 2005-12-04
> BO07333.5prime
GAAGTTATCAGTCGACATGACTCTCAACCTGGGCGGCTGGATCCACAGCT
TCACAGTGACGGACACCCAGGAGCACAAGGGCGGGTACACAATATACAAA
ATCACCTCGATTGTCTTCCCAAGGTCGGTACCTCAAGCTCTGACCTGCCT
GGTGGTGTGGAAACGGTTCCACGATGTCAAGCGGCTGCATCGCGAGCTTA
GCCGGCGCCACAAGAGTCTCCAACTACCCGGCAAGTTGCCAGTGCCCACA
GATAGCACATATTTCAAGAGATTCGATGCGGCAGTCATCCAACGGCGTAA
GGAGTACATCCTGCAATTATTAGACTTTGCAGCGCAGCATCCGGCGCTGT
ACAAGTGCTCAACCTTCACACAGTTCTTCCAGGAGACACCCTCGCCAAAC
GGATCGCCACTTAAGAAGCTATATGTGGAGCGATCCCTGCGGCTGCAGAC
GGAAGACAATGGCTGCGGAAGTGGCGGTTCGGAAACAGGAACTTGCGCTG
GTGCCATAGCCGACATTTGCGATAAACTAGACTTGCCCTATGACCCACAC
GACGCGGGGGGCATCACGCCTCTAGATCCGCGCTGTGATAAGGAGCAAAC
GAACAACGAATCCCAGGCCAAAGAAACTGAAATCGAATTAGAAACGAAAC
AGGAGCCCAAGACAGACGTAGCGCTGACCAAGAGGGATTATCTCCGCCTT
CTGACGCCCATGGCTTCCATAGAAAGCGACGACAGCGACTACATATATGA
GGCGGCTCTAGAGTTCAGTCATGCCGTCCAAGCGGAGGTTAACCTGGAGT
ATGCCGAAGCCCACGAGAGGTACAAGCATGGTGTGGACCTGCTG
BO07333.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-PA | 2046 | CG7156-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
| CG7156-PB | 1812 | CG7156-RB | 124..594 | 374..844 | 2355 | 100 | Plus |
| CG7156-PB | 1812 | CG7156-RB | 1..123 | 174..296 | 615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-RA | 2619 | CG7156-RA | 102..929 | 17..844 | 4140 | 100 | Plus |
| CG7156-RB | 2542 | CG7156-RB | 382..852 | 374..844 | 2355 | 100 | Plus |
| CG7156-RB | 2542 | CG7156-RB | 102..381 | 17..296 | 1400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18241169..18241900 | 844..113 | 3660 | 100 | Minus |
| 3R | 32079331 | 3R | 18241961..18242058 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:28:55 has no hits.
BO07333.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:45 Download gff for
BO07333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:56 Download gff for
BO07333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:03:06 Download gff for
BO07333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 123..954 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:55 Download gff for
BO07333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 98..929 | 9..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:55 Download gff for
BO07333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18241169..18241900 | 113..844 | 100 | <- | Minus |
| 3R | 18241963..18242062 | 9..112 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:03:06 Download gff for
BO07333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14066891..14067622 | 113..844 | 100 | <- | Minus |
| arm_3R | 14067685..14067784 | 9..112 | 96 | | Minus |
BO07333.complete Sequence
2077 bp assembled on 2008-08-14
GenBank Submission: FJ630754
> BO07333.complete
GAAGTTATCAGTCGACATGACTCTCAACCTGGGCGGCTGGATCCACAGCT
TCACAGTGACGGACACCCAGGAGCACAAGGGCGGGTACACAATATACAAA
ATCACCTCGATTGTCTTCCCAAGGTCGGTACCTCAAGCTCTGACCTGCCT
GGTGGTGTGGAAACGGTTCCACGATGTCAAGCGGCTGCATCGCGAGCTTA
GCCGGCGCCACAAGAGTCTCCAACTACCCGGCAAGTTGCCAGTGCCCACA
GATAGCACATATTTCAAGAGATTCGATGCGGCAGTCATCCAACGGCGTAA
GGAGTACATCCTGCAATTATTAGACTTTGCAGCGCAGCATCCGGCGCTGT
ACAAGTGCTCAACCTTCACACAGTTCTTCCAGGAGACACCCTCGCCAAAC
GGATCGCCACTTAAGAAGCTATATGTGGAGCGATCCCTGCGGCTGCAGAC
GGAAGACAATGGCTGCGGAAGTGGCGGTTCGGAAACAGGAACTTGCGCTG
GTGCCATAGCCGACATTTGCGATAAACTAGACTTGCCCTATGACCCACAC
GACGCGGGGGGCATCACGCCTCTAGATCCGCGCTGTGATAAGGAGCAAAC
GAACAACGAATCCCAGGCCAAAGAAACTGAAATCGAATTAGAAACGAAAC
AGGAGCCCAAGACAGACGTAGCGCTGACCAAGAGGGATTATCTCCGCCTT
CTGACGCCCATGGCTTCCATAGAAAGCGACGACAGCGACTACATATATGA
GGCGGCTCTAGAGTTCAGTCATGCCGTCCAAGCGGAGGTTAACCTGGAGT
ATGCCGAAGCCCACGAGAGGTACAAGCATGGTGTGGACCTGCTGCTCAAT
GGGGCCAAGCAGGATAGCAGTGAGGAGCGTAGATTTATAGCCAAGGCGAA
GATAGCCAAATACTTGGCGCGGGCTGAGGAGATTCACGCCAATTTCCTGG
CCAACGATTGTCCGACGAAGAAGCTGCAGTTCCAGCTCTCGCTGGACACG
ACAGACGGCGGTAGCGTGAGCCATTTGGAGTGCCCCTGGAATCAGTTGGC
ACGCTACAAGGTGCTGCAGATTCTCCAGGACCGTGTGATGCAGGTGCAGT
GTGTGACGAAATCCCAGCAGCCGGCTGCCATTATGAAGGGCGTCGAGAAG
CCGGCCAGTCACTCGCTGACCCAGAGCATCTTTCTGCCCCAGCAGGTGCC
TTACATGGTCCAACTGCTGGCCTACTTTCAGTCGGAGCAGAAGATTTTTC
TGCTACTGCGGCAGGCGGAGGGCGGCATGTTGTACGATTACCTGCAGAGC
TACACGCCCACGAGTAGTAAGAGTGTCAATTATGGAGAGCTTTTTCCCTC
GGACCAGGAGCCGGAGGAGAAGGAGGCAGAGGAGCCACCTCTGACTTCGG
ACAGCGATGTCAGCGATTTGGTTCGCAGCTCCCAGCAGCTTTTAAAGTCC
GTAACAAACACGCTGAGCAATTTGCAAGCGGGAGTCGTTACACCCAAAAG
AAATAAAAAGGTGGATCAAAATCGCATCCGAAGTAAACCCATTCCGGAGC
AGTGCCTGCGTCAGTGGGCTTGCGAACTGGCCATCGCCATACACAGTCTG
CACGGCAAGGGCGTTATTCTGCGCGATCTGCACATGGGCAACATTTTACT
GGGCGCCAAGGGACAGCTGCTCCTGACGTATTTCTATCAGAACGAGGGTC
TAACCTCGGACGACAACTATGTGCACAAGGCACTGAACTTGGAGGCAGTG
GCTAATCACTTTGTGGCACCAGAAAGACCGCTCACTTTTCGCTCGGACTG
GTGGAGCTACGGCGTGGTGCTCTATCAGCTTCTGCTGGGAGTTCCCTACA
AAGTCACGCATCCCGGGCAACTGGACCTCTATGGTTGTGTTCAGTATCCT
AGTGAGTCGTTGGAGATTTCCGATCATGCCAAGGATCTGCTGGAGCAACT
GCTGCAGCTTTCTCCGGAGCTACGTTTGGACTACGACCAATTGCAGGCTC
ATCCATTCTTCAAAGGCATCGATTGGCAGGCGGTTTTGGAGCAGGGAACT
GAGTCCATGGCAAGCTTTCTAGACCAT
BO07333.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:11:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-RA | 2046 | CG7156-PA | 1..2043 | 17..2059 | 10215 | 100 | Plus |
| CG7156-RB | 321 | CG7156-PB | 1..280 | 17..296 | 1400 | 100 | Plus |
| CG7156-RB | 321 | CG7156-PB | 281..321 | 374..414 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-RA | 2619 | CG7156-RA | 102..2144 | 17..2059 | 10215 | 100 | Plus |
| CG7156-RB | 2542 | CG7156-RB | 382..2067 | 374..2059 | 8430 | 100 | Plus |
| CG7156-RB | 2542 | CG7156-RB | 102..381 | 17..296 | 1400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18240170..18241900 | 1843..113 | 8655 | 100 | Minus |
| 3R | 32079331 | 3R | 18239895..18240110 | 2059..1844 | 1080 | 100 | Minus |
| 3R | 32079331 | 3R | 18241961..18242058 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:11:08 has no hits.
BO07333.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:16 Download gff for
BO07333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 123..2173 | 9..2063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:04 Download gff for
BO07333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 127..2169 | 17..2061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:11 Download gff for
BO07333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 127..2169 | 17..2061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:45 Download gff for
BO07333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 102..2144 | 17..2061 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:45 Download gff for
BO07333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18239892..18240110 | 1844..2061 | 99 | <- | Minus |
| 3R | 18240170..18241900 | 113..1843 | 100 | <- | Minus |
| 3R | 18241963..18242058 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:04 Download gff for
BO07333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14065614..14065832 | 1844..2061 | 99 | <- | Minus |
| arm_3R | 14065892..14067622 | 113..1843 | 100 | <- | Minus |
| arm_3R | 14067685..14067780 | 17..112 | 100 | | Minus |
BO07333.pep Sequence
Translation from 16 to 2077
> BO07333.pep
MTLNLGGWIHSFTVTDTQEHKGGYTIYKITSIVFPRSVPQALTCLVVWKR
FHDVKRLHRELSRRHKSLQLPGKLPVPTDSTYFKRFDAAVIQRRKEYILQ
LLDFAAQHPALYKCSTFTQFFQETPSPNGSPLKKLYVERSLRLQTEDNGC
GSGGSETGTCAGAIADICDKLDLPYDPHDAGGITPLDPRCDKEQTNNESQ
AKETEIELETKQEPKTDVALTKRDYLRLLTPMASIESDDSDYIYEAALEF
SHAVQAEVNLEYAEAHERYKHGVDLLLNGAKQDSSEERRFIAKAKIAKYL
ARAEEIHANFLANDCPTKKLQFQLSLDTTDGGSVSHLECPWNQLARYKVL
QILQDRVMQVQCVTKSQQPAAIMKGVEKPASHSLTQSIFLPQQVPYMVQL
LAYFQSEQKIFLLLRQAEGGMLYDYLQSYTPTSSKSVNYGELFPSDQEPE
EKEAEEPPLTSDSDVSDLVRSSQQLLKSVTNTLSNLQAGVVTPKRNKKVD
QNRIRSKPIPEQCLRQWACELAIAIHSLHGKGVILRDLHMGNILLGAKGQ
LLLTYFYQNEGLTSDDNYVHKALNLEAVANHFVAPERPLTFRSDWWSYGV
VLYQLLLGVPYKVTHPGQLDLYGCVQYPSESLEISDHAKDLLEQLLQLSP
ELRLDYDQLQAHPFFKGIDWQAVLEQGTESMASFLDH
BO07333.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-PA | 681 | CG7156-PA | 1..681 | 1..681 | 3560 | 100 | Plus |
| CG7156-PB | 106 | CG7156-PB | 1..93 | 1..93 | 496 | 100 | Plus |
| aPKC-PI | 511 | CG42783-PI | 218..461 | 459..676 | 205 | 26.8 | Plus |
| aPKC-PB | 526 | CG10261-PB | 218..461 | 459..676 | 205 | 26.8 | Plus |
| aPKC-PD | 608 | CG10261-PD | 300..543 | 459..676 | 205 | 26.8 | Plus |
