Clone Sequence Records
BO07339.3prime Sequence
866 bp (832 high quality bases) assembled on 2005-12-04
> BO07339.3prime
ATGGTCTAGAAAGCTTGCGAATTTGCGGCGCTTCAGTAGATCCGGTCGCC
AGTTAATCGGATGCGACTCCTCGCTGGCCTCGTCATCCTCCTTGTACACT
TTGATTGTCTTGTCCGCCTCGGCGGTGATTAGCCTGCTGCCCGATTGATC
GAAGCACATGGCGAATATGCCCGCCTCGCTGTCCATGGAGCCCGGTTGGA
CGGGCGCTTGGAACCGCTGGAAATTGTAGCCGGTACGCCAGTCCCAAAAG
AACATCGTGCCGTTGTCGCCGCCCGAAACGAGCACGCCCTCACTATTCGC
CGCCATGCAATTGACAATGGACGTGTGGCCGGAGATGTTCTGCACAAACT
TGCCCTCCGGACAGCGCCACTGCTTGATGTTATCCGGCGAGGCGGAGGCG
AACATGTACAGCGATGGATGGAGGACTATGCTGCGCACGGACTTCTTGTG
ATTGGTTAGCGTGCAGACGCTCTTGCCGGCGGCCAAATCCCACAGACGCA
CCGTGGAATCGTGGGAGCCGGTGATGATCTGCGGATTGGTGGCCTGCGCC
ACCACACTGGCCACCGTGTTCGTATGGCCCGTCAGTGTGTGCACATTCGC
CTTGGTCCGCATGTCCCAGATGCGGGCAGTGGAATCGCGACCGGAGGTGG
CCAGCACATCGATGGTGGGATGCAGGGCCAGCGAGTAAACAGCCGATAAG
TGACCGTGATAATGCCGTATGACTTTGTTGTACTCCAGATCCCAGCACTT
GACCTGCCGATCCTCGCCGCAGCTAAACAGATACGGATGCTTCGTGCTGA
CGGCCACACCGCGCACAGTGCTCACATGACCGGTGAGCGAGAGCTTCAGT
TTGCCGCTGGCCAGGT
BO07339.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1796-PA | 1449 | CG1796-RA | 599..1446 | 866..19 | 4240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango4-RA | 1620 | CG1796-RA | 691..1538 | 866..19 | 4240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12021817..12022664 | 866..19 | 4240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:33:12 has no hits.
BO07339.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:54 Download gff for
BO07339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1796-PA | 599..1449 | 18..866 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:08 Download gff for
BO07339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1796-PA | 599..1449 | 18..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:55 Download gff for
BO07339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango4-RA | 691..1538 | 19..866 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:08 Download gff for
BO07339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango4-RA | 691..1538 | 19..866 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:08 Download gff for
BO07339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12021817..12022664 | 19..866 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:55 Download gff for
BO07339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11915850..11916697 | 19..866 | 100 | | Minus |
BO07339.5prime Sequence
912 bp (809 high quality bases) assembled on 2005-12-04
> BO07339.5prime
GAAGTTATCAGTCGACATGGCCATGGAAGACGTGCAGAAGCACAGCGTGC
ACACGCTGATATTCCGCTCCCTGAAGCGCACCCACGATCTGTTCGTCTCC
AACCAGGGAAATCTGCCCGAAATCGACGAACGTTTAGAGAAGTTGCGACG
TTCCATCAAGGCGAAGGATGGCTATGGCCTTGTGCTGGACAAGGTGGCGA
AGATCGGCGAGGCCAGGAAGGCATCAGGAGCCCAAACGCCGGGCGACAAG
ACGCTGGCCATCACCGATGGCAGTGCAACGGATGCGGCCAGCGGTGCCGG
CAGTCTGGTTAAGTACAATGCGGGCGCCAGGCCAGCGGAGAAGACAGCGC
CACTGGTTACCGGCACACACACATCCCTGGTGCGCGCCTCCCTGGCGAAC
AGCAATGCAGATATGAGCGCCAATGGCGCCATCGCCAGCCATCTGCAATT
GATACCGAAGAAGGCGCCCAGCATACCCAAGCCCAAGTGGCACGCACCCT
GGAAACTGTCGCGCGTCATCTCCGGCCATTTGGGCTGGGTGCGATGCATC
GCCGTGGAGCCGGGCAACGAGTGGTTCGCCACCGGCGCTGGCGATCGTGT
GATCAAGATCTGGGACCTGGCCAGCGGCAAACTGAAGCTCTCGCTCACCG
GTCATGTGAGCACTGTGCGCGGTGTGGCCGTCAGCACGAAGCATCCGTAT
CTGTTTAGCTGCGGCGAGGATCGGCAGGTCAAGTGCTGGGATCTGGAGTA
CAACAAAGTCATACGGCATTATCACGGTCACTTATCGGCTGTTTACTCGC
TGGCCCTGCATCCCACCATCGATGTGCTGGCCACCTCCGGTCGCGATTCC
ACTGCCCGCATCTGGGACATGCGGACCAAGGCGAATGTGCACACACTGAC
GGGCCATACGAA
BO07339.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1796-PA | 1449 | CG1796-RA | 1..896 | 17..912 | 4480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango4-RA | 1620 | CG1796-RA | 93..988 | 17..912 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12021338..12022114 | 136..912 | 3885 | 100 | Plus |
| X | 23542271 | X | 12021160..12021278 | 17..135 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:37:25 has no hits.
BO07339.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:55 Download gff for
BO07339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1796-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:10 Download gff for
BO07339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1796-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:55:32 Download gff for
BO07339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango4-RA | 84..988 | 6..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:57:20 Download gff for
BO07339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango4-RA | 84..988 | 6..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:57:20 Download gff for
BO07339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12021151..12021278 | 6..135 | 96 | -> | Plus |
| X | 12021338..12022114 | 136..912 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:55:32 Download gff for
BO07339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11915184..11915311 | 6..135 | 96 | -> | Plus |
| arm_X | 11915371..11916147 | 136..912 | 100 | | Plus |
BO07339.complete Sequence
1480 bp (1480 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630755
> BO07339.complete
GAAGTTATCAGTCGACATGGCCATGGAAGACGTGCAGAAGCACAGCGTGC
ACACGCTGATATTCCGCTCCCTGAAGCGCACCCACGATCTGTTCGTCTCC
AACCAGGGAAATCTGCCCGAAATCGACGAACGTTTAGAGAAGTTGCGACG
TTCCATCAAGGCGAAGGATGGCTATGGCCTTGTGCTGGACAAGGTGGCGA
AGATCGGCGAGGCCAGGAAGGCATCAGGAGCCCAAACGCCGGGCGACAAG
ACGCTGGCCATCACCGATGGCAGTGCAACGGATGCGGCCAGCGGTGCCGG
CAGTCTGGTTAAGTACAATGCGGGCGCCAGGCCAGCGGAGAAGACAGCGC
CACTGGTTACCGGCACACACACATCCCTGGTGCGCGCCTCCCTGGCGAAC
AGCAATGCAGATATGAGCGCCAATGGCGCCATCGCCAGCCATCTGCAATT
GATACCGAAGAAGGCGCCCAGCATACCCAAGCCCAAGTGGCACGCACCCT
GGAAACTGTCGCGCGTCATCTCCGGCCATTTGGGCTGGGTGCGATGCATC
GCCGTGGAGCCGGGCAACGAGTGGTTCGCCACCGGCGCTGGCGATCGTGT
GATCAAGATCTGGGACCTGGCCAGCGGCAAACTGAAGCTCTCGCTCACCG
GTCATGTGAGCACTGTGCGCGGTGTGGCCGTCAGCACGAAGCATCCGTAT
CTGTTTAGCTGCGGCGAGGATCGGCAGGTCAAGTGCTGGGATCTGGAGTA
CAACAAAGTCATACGGCATTATCACGGTCACTTATCGGCTGTTTACTCGC
TGGCCCTGCATCCCACCATCGATGTGCTGGCCACCTCCGGTCGCGATTCC
ACTGCCCGCATCTGGGACATGCGGACCAAGGCGAATGTGCACACACTGAC
GGGCCATACGAACACGGTGGCCAGTGTGGTGGCGCAGGCCACCAATCCGC
AGATCATCACCGGCTCCCACGATTCCACGGTGCGTCTGTGGGATTTGGCC
GCCGGCAAGAGCGTCTGCACGCTAACCAATCACAAGAAGTCCGTGCGCAG
CATAGTCCTCCATCCATCGCTGTACATGTTCGCCTCCGCCTCGCCGGATA
ACATCAAGCAGTGGCGCTGTCCGGAGGGCAAGTTTGTGCAGAACATCTCC
GGCCACACGTCCATTGTCAATTGCATGGCGGCGAATAGTGAGGGCGTGCT
CGTTTCGGGCGGCGACAACGGCACGATGTTCTTTTGGGACTGGCGTACCG
GCTACAATTTCCAGCGGTTCCAAGCGCCCGTCCAACCGGGCTCCATGGAC
AGCGAGGCGGGCATATTCGCCATGTGCTTCGATCAATCGGGCAGCAGGCT
AATCACCGCCGAGGCGGACAAGACAATCAAAGTGTACAAGGAGGATGACG
AGGCCAGCGAGGAGTCGCATCCGATTAACTGGCGACCGGATCTACTGAAG
CGCCGCAAATTCGCAAGCTTTCTAGACCAT
BO07339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango4-RA | 1449 | CG1796-PA | 1..1446 | 17..1462 | 7230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango4-RA | 1620 | CG1796-RA | 93..1538 | 17..1462 | 7230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12021338..12022664 | 136..1462 | 6635 | 100 | Plus |
| X | 23542271 | X | 12021160..12021278 | 17..135 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:13:31 has no hits.
BO07339.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:02 Download gff for
BO07339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango4-RA | 1..1449 | 17..1463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:06 Download gff for
BO07339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango4-RA | 88..1542 | 6..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:19 Download gff for
BO07339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango4-RA | 93..1538 | 17..1464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:02 Download gff for
BO07339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango4-RA | 88..1542 | 6..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:41 Download gff for
BO07339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango4-RA | 93..1538 | 17..1464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:41 Download gff for
BO07339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12021160..12021278 | 17..135 | 100 | -> | Plus |
| X | 12021338..12022664 | 136..1464 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:19 Download gff for
BO07339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11915193..11915311 | 17..135 | 100 | -> | Plus |
| arm_X | 11915371..11916697 | 136..1464 | 99 | | Plus |
BO07339.pep Sequence
Translation from 16 to 1480
> BO07339.pep
MAMEDVQKHSVHTLIFRSLKRTHDLFVSNQGNLPEIDERLEKLRRSIKAK
DGYGLVLDKVAKIGEARKASGAQTPGDKTLAITDGSATDAASGAGSLVKY
NAGARPAEKTAPLVTGTHTSLVRASLANSNADMSANGAIASHLQLIPKKA
PSIPKPKWHAPWKLSRVISGHLGWVRCIAVEPGNEWFATGAGDRVIKIWD
LASGKLKLSLTGHVSTVRGVAVSTKHPYLFSCGEDRQVKCWDLEYNKVIR
HYHGHLSAVYSLALHPTIDVLATSGRDSTARIWDMRTKANVHTLTGHTNT
VASVVAQATNPQIITGSHDSTVRLWDLAAGKSVCTLTNHKKSVRSIVLHP
SLYMFASASPDNIKQWRCPEGKFVQNISGHTSIVNCMAANSEGVLVSGGD
NGTMFFWDWRTGYNFQRFQAPVQPGSMDSEAGIFAMCFDQSGSRLITAEA
DKTIKVYKEDDEASEESHPINWRPDLLKRRKFASFLDH
BO07339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango4-PA | 482 | CG1796-PA | 1..482 | 1..482 | 2535 | 100 | Plus |
| wds-PB | 361 | CG17437-PB | 17..360 | 106..460 | 352 | 26.3 | Plus |
| wds-PA | 361 | CG17437-PA | 17..360 | 106..460 | 352 | 26.3 | Plus |
| CG10931-PA | 345 | CG10931-PA | 46..300 | 162..411 | 288 | 27.3 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 88..409 | 148..458 | 284 | 27.5 | Plus |
