Clone BO07342 Report

Search the DGRC for BO07342

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:73
Well:42
Vector:pDNR-Dual
Associated Gene/Transcriptshu-RA
Protein status:BO07342.pep: validated full length
Sequenced Size:1399

Clone Sequence Records

BO07342.3prime Sequence

939 bp (827 high quality bases) assembled on 2005-12-04

> BO07342.3prime
ATGGTCTAGAAAGCTTGCAGCGAACTTAACATCCGGCTTAGACAATGTCA
GAACATCCTCTTGGATGGGAGACAAAGTTAGCTTCAGGTTGTGTTCCTTG
GCCAATTTGCAAGTCGCGTCGAACTGAGCGTTCGAATAAGATTTACGTGA
AAAGCTCACTTGTTGATCTGAAGTGTTCTTAAACCGCCTAATCAAATCTT
CCATTTTGTCATTGAAATCCTGTTCCTTTGCCTCCTTCTCCAGCTGAGCA
GGCGTTTTGCGGACGTCTGACTTTGAGTTCTTTAACGAGAAGGCACGTGC
CCATATATCGCGACTGGCCTCCTCATACTTGCTGATTCTCTTGTTCATGC
TGATAATCTCGTCGCTGATCTCCTTGTTCGCCGGCTGCTTGGCCTGCGCC
TGCAGGTAAGCGTTGCGGGCCAAGTTGTACTCGCCCAGAGCGGCCAGGGC
GCGTCCCTCCTGGAAGAGCGCCTTGCAAGACGGATTGCCCATGGTCAGGT
GCCGTAAGGCCTTCATCATGATGCAGGCGCGCTTCGGCTTGTTCATCTTG
TTGTAAACGATCATCAGGTTTTGGTTCAGGGTAGTAAGCAGTTCAGTTTG
CTTGCGCTCCTCCTCGTCATTGGCCATTCGGCAGTAGTTCAGTGAGCTCA
CTGCCCGTTCGAAGGCAGTTGCTGCACTCTGATAGCGTCCGAGCTTCACC
GAGTCCTTGCCATGTAGGTGCAAGTCGACAGCCTTCGGATAGACCACACA
AAACTTGTCGCGGTCTTCTTGGGGGATAGCATCGATGCCCTTCGCATCTC
CTATGAGCGAGTAGTCAATTACCTCCACTTTAAAGAGCGCATCCGCCTTG
GGGCTTTGATCGCGGAGGGCAACCGAGTTCTCCGAAAAGCAGCTTGTAGG
AGATTATAAACTCGGCCTGCTCGTAAGGACGCATGCTGC

BO07342.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4735-PA 1368 shu-RA 532..1365 852..19 4170 100 Minus
CG4735-PA 1368 shu-RA 446..524 939..861 395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
shu-RA 1694 CG4735-RA 538..1457 939..19 4535 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23841698..23842252 19..573 2775 100 Plus
2R 25286936 2R 23842328..23842692 574..939 1720 98.6 Plus
Blast to na_te.dros performed on 2015-02-12 16:03:10 has no hits.

BO07342.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:56 Download gff for BO07342.3prime
Subject Subject Range Query Range Percent Splice Strand
shu-PA 446..1368 16..939 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:11 Download gff for BO07342.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4735-PA 446..1368 16..939 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:16:39 Download gff for BO07342.3prime
Subject Subject Range Query Range Percent Splice Strand
shu-RA 538..1468 7..939 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:24 Download gff for BO07342.3prime
Subject Subject Range Query Range Percent Splice Strand
shu-RA 538..1468 7..939 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:24 Download gff for BO07342.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23841687..23842252 7..573 99 <- Plus
2R 23842328..23842692 574..939 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:16:39 Download gff for BO07342.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19729210..19729775 7..573 99 <- Plus
arm_2R 19729851..19730215 574..939 99   Plus

BO07342.5prime Sequence

883 bp (822 high quality bases) assembled on 2005-12-04

> BO07342.5prime
GAAGTTATCAGTCGACATGGAAGAAAACTTCGAACCGTACACCCCACAGT
TGCTCAAGAATCCCTTGTCCTATTCGGATCTCGTGAAAAAGGGCGTTGAG
TTCGAGGTCGACAATTCGCAGCAGAACCATGCCAGGGATCTGGGTCTCGA
CAGCGACAGCGACAGCGACTACGAGGATGCGCTGGACGTGGACGGCGAGG
AGCTACGTTCACCGTGGACATATTCATTCGACGAACTGCGTGCGCTGATG
AGCGAGATCGACGAAAACATTTACAAGCGGATCACTCGCACCGGTCACGT
GGATCGGGAGGCGGTGCCGAACAAGGCTAGGGTCTCGGTTCGGTACAGTG
GCTACTGGGAGGGCGAGACCGCTCCCTTCGACTCCTCCCTGCTGCGGGGC
AGCAAATTCGTGTTTGAAACTGGCCAGGGAACGGTGGTTGAAGGCCTGGA
GGTCGCCGTCCGCAGCATGCGTCCTTACGAGCAGGCCGAGTTTATAATCT
CCTACAAGCTGCTTTTCGGAGAACTCGGTTGCCCTCCGCGGATCAAGCCC
AAGGCGGATGCGCTCTTTAAAGTGGAGGTAATTGACTACTCGCTCATAGG
AGATGCGAAGGGCATCGATGCTATCCCCCAAGAAGACCGCGACAAGTTTT
GTGTGGTCTATCCGAAGGCTGTCGACTTGCACCTACATGGCAAGGACTCG
GTGAAGCTCGGACGCTATCAGAGTGCAGCAACTGCCTTCGAACGGGCAGT
GAGCTCACTGAACTACTGCCGAATGGCCAATGACGAGGAGGAGCGCAAGC
AAACTGAACTGCTTACTACCCTGAAACAAACCTGATGATCGTTTTACACA
AGATGAACAAGCCGAGCGCGCCTGCATCATGAT

BO07342.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4735-PA 1368 shu-RA 1..809 17..825 4045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
shu-RA 1694 CG4735-RA 93..961 17..883 4235 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23842329..23843078 825..76 3750 100 Minus
2R 25286936 2R 23843135..23843194 76..17 300 100 Minus
2R 25286936 2R 23842194..23842250 883..828 190 93 Minus
Blast to na_te.dros performed on 2015-02-10 18:10:32 has no hits.

BO07342.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:57 Download gff for BO07342.5prime
Subject Subject Range Query Range Percent Splice Strand
shu-PA 1..869 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:13 Download gff for BO07342.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4735-PA 1..869 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:05:59 Download gff for BO07342.5prime
Subject Subject Range Query Range Percent Splice Strand
shu-RA 93..961 17..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:30:10 Download gff for BO07342.5prime
Subject Subject Range Query Range Percent Splice Strand
shu-RA 93..961 17..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:30:10 Download gff for BO07342.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23842194..23842252 827..883 93 <- Minus
2R 23842328..23843078 76..826 99 <- Minus
2R 23843136..23843194 17..75 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:05:59 Download gff for BO07342.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19729717..19729775 827..883 93 <- Minus
arm_2R 19729851..19730601 76..826 99 <- Minus
arm_2R 19730659..19730717 17..75 100   Minus

BO07342.complete Sequence

1399 bp (1399 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630756

> BO07342.complete
GAAGTTATCAGTCGACATGGAAGAAAACTTCGAACCGTACACCCCACAGT
TGCTCAAGAATCCCTTGTCCTATTCGGATCTCGTGAAAAAGGGCGTTGAG
TTCGAGGTCGACAATTCGCAGCAGAACCATGCCAGGGATCTGGGTCTCGA
CAGCGACAGCGACAGCGACTACGAGGATGCGCTGGACGTGGACGGCGAGG
AGCTACGTTCACCGTGGACATATTCATTCGACGAACTGCGTGCGCTGATG
AGCGAGATCGACGAAAACATTTACAAGCGGATCACTCGCACCGGTCACGT
GGATCGGGAGGCGGTGCCGAACAAGGCTAGGGTCTCGGTTCGGTACAGTG
GCTACTGGGAGGGCGAGACCGCTCCCTTCGACTCCTCCCTGCTGCGGGGC
AGCAAATTCGTGTTTGAAACTGGCCAGGGAACGGTGGTTGAAGGCCTGGA
GGTCGCCGTCCGCAGCATGCGTCCTTACGAGCAGGCCGAGTTTATAATCT
CCTACAAGCTGCTTTTCGGAGAACTCGGTTGCCCTCCGCGGATCAAGCCC
AAGGCGGATGCGCTCTTTAAAGTGGAGGTAATTGACTACTCGCTCATAGG
AGATGCGAAGGGCATCGATGCTATCCCCCAAGAAGACCGCGACAAGTTTT
GTGTGGTCTATCCGAAGGCTGTCGACTTGCACCTACATGGCAAGGACTCG
GTGAAGCTCGGACGCTATCAGAGTGCAGCAACTGCCTTCGAACGGGCAGT
GAGCTCACTGAACTACTGCCGAATGGCCAATGACGAGGAGGAGCGCAAGC
AAACTGAACTGCTTACTACCCTGAACCAAAACCTGATGATCGTTTACAAC
AAGATGAACAAGCCGAAGCGCGCCTGCATCATGATGAAGGCCTTACGGCA
CCTGACCATGGGCAATCCGTCTTGCAAGGCGCTCTTCCAGGAGGGACGCG
CCCTGGCCGCTCTGGGCGAGTACAACTTGGCCCGCAACGCTTACCTGCAG
GCGCAGGCCAAGCAGCCGGCGAACAAGGAGATCAGCGACGAGATTATCAG
CATGAACAAGAGAATCAGCAAGTATGAGGAGGCCAGTCGCGATATATGGG
CACGTGCCTTCTCGTTAAAGAACTCAAAGTCAGACGTCCGCAAAACGCCT
GCTCAGCTGGAGAAGGAGGCAAAGGAACAGGATTTCAATGACAAAATGGA
AGATTTGATTAGGCGGTTTAAGAACACTTCAGATCAACAAGTGAGCTTTT
CACGTAAATCTTATTCGAACGCTCAGTTCGACGCGACTTGCAAATTGGCC
AAGGAACACAACCTGAAGCTAACTTTGTCTCCCATCCAAGAGGATGTTCT
GACATTGTCTAAGCCGGATGTTAAGTTCGCTGCAAGCTTTCTAGACCAT

BO07342.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
shu-RA 1368 CG4735-PA 1..1365 17..1381 6825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
shu-RA 1694 CG4735-RA 93..1457 17..1381 6825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23842328..23843078 826..76 3755 100 Minus
2R 25286936 2R 23841698..23842252 1381..827 2775 100 Minus
2R 25286936 2R 23843135..23843194 76..17 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:42:31 has no hits.

BO07342.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:03 Download gff for BO07342.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 1..1368 17..1384 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:08 Download gff for BO07342.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 86..1461 17..1393 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:55 Download gff for BO07342.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 93..1457 17..1383 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:03 Download gff for BO07342.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 86..1461 17..1393 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:04 Download gff for BO07342.complete
Subject Subject Range Query Range Percent Splice Strand
shu-RA 93..1457 17..1383 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:04 Download gff for BO07342.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23841695..23842252 827..1383 99 <- Minus
2R 23842328..23843078 76..826 100 <- Minus
2R 23843136..23843194 17..75 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:55 Download gff for BO07342.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19729218..19729775 827..1383 99 <- Minus
arm_2R 19729851..19730601 76..826 100 <- Minus
arm_2R 19730659..19730717 17..75 100   Minus

BO07342.pep Sequence

Translation from 16 to 1399

> BO07342.pep
MEENFEPYTPQLLKNPLSYSDLVKKGVEFEVDNSQQNHARDLGLDSDSDS
DYEDALDVDGEELRSPWTYSFDELRALMSEIDENIYKRITRTGHVDREAV
PNKARVSVRYSGYWEGETAPFDSSLLRGSKFVFETGQGTVVEGLEVAVRS
MRPYEQAEFIISYKLLFGELGCPPRIKPKADALFKVEVIDYSLIGDAKGI
DAIPQEDRDKFCVVYPKAVDLHLHGKDSVKLGRYQSAATAFERAVSSLNY
CRMANDEEERKQTELLTTLNQNLMIVYNKMNKPKRACIMMKALRHLTMGN
PSCKALFQEGRALAALGEYNLARNAYLQAQAKQPANKEISDEIISMNKRI
SKYEEASRDIWARAFSLKNSKSDVRKTPAQLEKEAKEQDFNDKMEDLIRR
FKNTSDQQVSFSRKSYSNAQFDATCKLAKEHNLKLTLSPIQEDVLTLSKP
DVKFAASFLDH

BO07342.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
shu-PA 455 CG4735-PA 1..455 1..455 2339 100 Plus
CG30075-PA 195 CG30075-PA 36..188 206..358 282 38.6 Plus