Clone Sequence Records
BO07348.3prime Sequence
922 bp (768 high quality bases) assembled on 2005-12-04
> BO07348.3prime
ATGGTCTAGAAAGCTTGCGTAGAAGTACTCGTACTTCTGGGCGTGGTGCA
GCATCACCTCCATCGACTTCTTGCCCTGCAGGACCCCATTTCGTTCCATA
TAGTTCCAGATGGAGGCCATGAAGACGCAGAACAGGATCACGCCAAACAC
GATGAACTTGAGCAGCAGAAAGATAGTGCGCATGCCCACGGGGGCGGTGA
ACTCCACCAGAAGGACCAAGAGGACAAACAGGAAGGTGGCGGCGCTGTAG
TACAGTATTCGATCAGTGTTTAACTGCAGCAGGGAAGCATCGCACAGCGC
CAGAGCTTCAAGAAGGGCAGCAGTTCTAGCGGCGGGCATGGATTGAATGG
AAGTGGAGCTTCCATTGCATTGGATCTCCGGCTGGTGTTGTGATGACTGA
TCGTCCTCTCCTGTCAAAGCATCCCCTGCTCCTACTTCCCTCACGGAACA
GGTTTCACCATCCTCTACCAGGCAGTTCACCTCGATCGTTGCCACTGGCT
CCTCACTTCTAGGTTCCAGCTTGAATAACTTCAGCTTGGCCATCACCGCC
TCGTGGTCGGAGAAGCTAAATTTCTCGCCGGGTACTCGCTCCGGAAAAGG
CAGTTTGTATTCGGCTATCTCAGCATTTACATGATCGCCACCACGCACAA
AGATGTGATCGATACGGATACCCAGAGGATTTCTCTCCCGTGCTTGCTTA
GATGTGTATGAGTTGTGTTCGCATTCGTTGGTCCGAAAAGAGTCCGAGTC
GCAGCTGTCGAGCATCTTGGAGGTATAGAGCAGCACCTTGTAAGAGATGT
CCTGTGGCTGGGCATTCAGGTCGCCAGCCAGAATCTGCAGCGCAGAGTTC
CCCCTGGTGGCTTTCATGAATTGAGCAGTATCGAAGGCCTGAATAACGCG
ATGTGTCTTGTACTCGTCGTTG
BO07348.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-PA | 1329 | CG12034-RA | 423..1326 | 922..19 | 4470 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-RA | 1684 | CG12034-RA | 571..1474 | 922..19 | 4490 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3219812..3220715 | 922..19 | 4490 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-11 23:45:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3562..3664 | 69..173 | 133 | 60 | Plus |
BO07348.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:05 Download gff for
BO07348.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-PA | 423..1329 | 16..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:25 Download gff for
BO07348.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-PA | 423..1329 | 16..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:27 Download gff for
BO07348.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 571..1486 | 7..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:23 Download gff for
BO07348.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 571..1486 | 7..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:23 Download gff for
BO07348.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3219812..3220727 | 7..922 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:27 Download gff for
BO07348.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3219812..3220727 | 7..922 | 99 | | Minus |
BO07348.5prime Sequence
892 bp (776 high quality bases) assembled on 2005-12-04
> BO07348.5prime
GAAGTTATCAGTCGACATGTTGCTGCTGGAGCTGAACATTCTGACCCTGA
ATATATGGGGCATTCCGTATGTGTCGAGTGATCGCAGACCCCGCATCGAT
GCCATCTGCAAGGAGCTGGCTAGCGGGAAGTATGACATCGTGTCCCTGCA
GGAGGTGTGGGCGCAAGAGGACAGCGAGCTACTCCAAAAGGGCACGGAGG
CGGTCCTGCCCCATAGCCACTACTTTCACAGCGGCGTGATGGGCGCCGGT
CTGCTGGTACTGTCCAAGTACCCCATCCTGGGCACTCTGTTTCATGCGTG
GTCCGTAAATGGCTACTTCCACCGTATTCAGCATGCCGATTGGTTCGGCG
GCAAAGGTGTGGGCCTGTGCCGCATACTCGTCGGCGGGCAGATGGTGCAC
CTATATAATGCCCACCTGCACGCGGAGTACGACAATGCCAACGACGAGTA
CAAGACACATCGCGTTATTCAGGCCTTCGATACTGCTCAATTCATTGAAG
CCACCAGGGGGAACTCTGCGCTGCAGATTCTGGCTGGCGACCTGAATGCC
CAGCCACAGGACATCTCTTACAAGGTGCTGCTCTATACCTCCAAGATGCT
CGACAGCTGCGACTCGGACTCTTTTCGGACCAACGAATGCGAACACAACT
CATACACATCTAAGCAAGCACGGGAGAGAAATCCTCTGGGTATCCGTATC
GATCACATCTTTGTGCGTGGTGGCGATCATGTAAATGCTGAGATAGCCGA
ATACAAACTGCCTTTTCCGGAGCGAGTACCCGGCGAGAAATTTAGCTTCT
CCGACCACGAGGCGGTGATGGCCAAGCTGAAGTTATTTCAGCTGGAACCT
AGAAGTGAGGGAGCAGTGGCAACGATCGAGGTGAACTGCCTG
BO07348.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-PA | 1329 | CG12034-RA | 1..844 | 17..860 | 4170 | 99.7 | Plus |
| CG12034-PA | 1329 | CG12034-RA | 848..876 | 864..892 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-RA | 1684 | CG12034-RA | 142..1024 | 10..892 | 4310 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3219430..3220265 | 57..892 | 4105 | 99.4 | Plus |
| 3L | 28110227 | 3L | 3219297..3219345 | 10..58 | 215 | 95.9 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:33:25 has no hits.
BO07348.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:06 Download gff for
BO07348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:26 Download gff for
BO07348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:58 Download gff for
BO07348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 142..1024 | 10..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:10 Download gff for
BO07348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 142..1024 | 10..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:10 Download gff for
BO07348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3219297..3219344 | 10..57 | 95 | -> | Plus |
| 3L | 3219431..3220265 | 58..892 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:58 Download gff for
BO07348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3219297..3219344 | 10..57 | 95 | -> | Plus |
| arm_3L | 3219431..3220265 | 58..892 | 99 | | Plus |
BO07348.complete Sequence
1360 bp (1360 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630757
> BO07348.complete
GAAGTTATCAGTCGACATGTTGCTGCTGGAGCTGAACATTCTGACCCTGA
ATATATGGGGCATTCCGTATGTGTCGAGTGATCGCAGACCCCGCATCGAT
GCCATCTGCAAGGAGCTGGCTAGCGGGAAGTATGACATCGTGTCCCTGCA
GGAGGTGTGGGCGCAAGAGGACAGCGAGCTACTCCAAAAGGGCACGGAGG
CGGTCCTGCCCCATAGCCACTACTTTCACAGCGGCGTGATGGGCGCCGGT
CTGCTGGTACTGTCCAAGTACCCCATCCTGGGCACTCTGTTTCATGCGTG
GTCCGTAAATGGCTACTTCCACCGTATTCAGCATGCCGATTGGTTCGGCG
GCAAAGGTGTGGGCCTGTGCCGCATACTCGTCGGCGGGCAGATGGTGCAC
CTATATAATGCCCACCTGCACGCGGAGTACGACAATGCCAACGACGAGTA
CAAGACACATCGCGTTATTCAGGCCTTCGATACTGCTCAATTCATTGAAG
CCACCAGGGGGAACTCTGCGCTGCAGATTCTGGCTGGCGACCTGAATGCC
CAGCCACAGGACATCTCTTACAAGGTGCTGCTCTATACCTCCAAGATGCT
CGACAGCTGCGACTCGGACTCTTTTCGGACCAACGAATGCGAACACAACT
CATACACATCTAAGCAAGCACGGGAGAGAAATCCTCTGGGTATCCGTATC
GATCACATCTTTGTGCGTGGTGGCGATCATGTAAATGCTGAGATAGCCGA
ATACAAACTGCCTTTTCCGGAGCGAGTACCCGGCGAGAAATTTAGCTTCT
CCGACCACGAGGCGGTGATGGCCAAGCTGAAGTTATTCAAGCTGGAACCT
AGAAGTGAGGAGCCAGTGGCAACGATCGAGGTGAACTGCCTGGTAGAGGA
TGGTGAAACCTGTTCCGTGAGGGAAGTAGGAGCAGGGGATGCTTTGACAG
GAGAGGACGATCAGTCATCACAACACCAGCCGGAGATCCAATGCAATGGA
AGCTCCACTTCCATTCAATCCATGCCCGCCGCTAGAACTGCTGCCCTTCT
TGAAGCTCTGGCGCTGTGCGATGCTTCCCTGCTGCAGTTAAACACTGATC
GAATACTGTACTACAGCGCCGCCACCTTCCTGTTTGTCCTCTTGGTCCTT
CTGGTGGAGTTCACCGCCCCCGTGGGCATGCGCACTATCTTTCTGCTGCT
CAAGTTCATCGTGTTTGGCGTGATCCTGTTCTGCGTCTTCATGGCCTCCA
TCTGGAACTATATGGAACGAAATGGGGTCCTGCAGGGCAAGAAGTCGATG
GAGGTGATGCTGCACCACGCCCAGAAGTACGAGTACTTCTACGCAAGCTT
TCTAGACCAT
BO07348.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-RA | 1329 | CG12034-PA | 1..1326 | 17..1342 | 6630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-RA | 1684 | CG12034-RA | 142..1474 | 10..1342 | 6635 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3219430..3220715 | 57..1342 | 6430 | 100 | Plus |
| 3L | 28110227 | 3L | 3219297..3219345 | 10..58 | 215 | 95.9 | Plus |
Blast to na_te.dros performed 2014-11-27 14:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3562..3664 | 1292..1188 | 133 | 60 | Minus |
BO07348.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:51 Download gff for
BO07348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 1..1329 | 17..1345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:54 Download gff for
BO07348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 174..1518 | 10..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:35 Download gff for
BO07348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 154..1474 | 22..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:51 Download gff for
BO07348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 174..1518 | 10..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:07 Download gff for
BO07348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12034-RA | 154..1474 | 22..1344 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:07 Download gff for
BO07348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3219309..3219344 | 22..57 | 100 | -> | Plus |
| 3L | 3219431..3220715 | 58..1344 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:35 Download gff for
BO07348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3219309..3219344 | 22..57 | 100 | -> | Plus |
| arm_3L | 3219431..3220715 | 58..1344 | 99 | | Plus |
BO07348.pep Sequence
Translation from 16 to 1360
> BO07348.pep
MLLLELNILTLNIWGIPYVSSDRRPRIDAICKELASGKYDIVSLQEVWAQ
EDSELLQKGTEAVLPHSHYFHSGVMGAGLLVLSKYPILGTLFHAWSVNGY
FHRIQHADWFGGKGVGLCRILVGGQMVHLYNAHLHAEYDNANDEYKTHRV
IQAFDTAQFIEATRGNSALQILAGDLNAQPQDISYKVLLYTSKMLDSCDS
DSFRTNECEHNSYTSKQARERNPLGIRIDHIFVRGGDHVNAEIAEYKLPF
PERVPGEKFSFSDHEAVMAKLKLFKLEPRSEEPVATIEVNCLVEDGETCS
VREVGAGDALTGEDDQSSQHQPEIQCNGSSTSIQSMPAARTAALLEALAL
CDASLLQLNTDRILYYSAATFLFVLLVLLVEFTAPVGMRTIFLLLKFIVF
GVILFCVFMASIWNYMERNGVLQGKKSMEVMLHHAQKYEYFYASFLDH
BO07348.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12034-PA | 442 | CG12034-PA | 1..442 | 1..442 | 2306 | 100 | Plus |
