Clone BO07356 Report

Search the DGRC for BO07356

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:73
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptNmdmc-RB
Protein status:BO07356.pep: validated full length
Sequenced Size:961

Clone Sequence Records

BO07356.3prime Sequence

959 bp (757 high quality bases) assembled on 2005-12-04

> BO07356.3prime
ATGGTCTAGAAAGCTTGCGGAGGACTTGCGATCATCGAACTGCTTCCTGG
CTGCCTTCAGCGTGTTGTGCATCAGCATGGCCACCGTCATGGGACCAACT
CCGCCGGGCACAGGAGTGATGTGGCCGGCGACCTGGCGAACTTCTTCAAA
GTCCACGTCTCCGACCAGCTTAAACTGGCCAGTGCTCTCATCCTTGATGC
GGTTGATGCCCACGTCGATGACACAGGCTCCGGGCTTAACCATGTCCTTG
GTGATCAAACCCGGCTTTCCCACTGCGACCACAATGATATCCGCTTGGCG
GCAATGGCGAGCCAGTTCCTTGGGCGGTGTATACCTGTGGCAGATGGTCA
CCGTGGCATCCATTGCCTTGGTGGCATACTTGCCATCCGCGTGCAGCAAG
ATTGCCATCGGTAGACTGACATTCTTGGAGCGTCCCACCACAACGGCGTT
ACGACCGAGAGTTTCGATTTTCATATGCTCCAACAGTCGCTTGACTCCCA
GCGGCGTGGCCGGAATATTGGCCTCCATGTCCAGAGCCGTGCGTCCGATG
TTGACCTCATTGAAGCCATCCACATCCTTGTCCACATCGACGGCATTGCA
GATGGTGCGCTCATTGATGTGCTCGGGTACCGGCAGCTGCACCAGTATCC
CCGTGACCTGGGGATCCTTGTTCAGATCGGCAATCAGTTGCAGCAGCTCC
TCCTGCGTGGTAGAGGCGGGCAATCTCTTGGTCTCACTGGAGATGCCCAC
CTCCCGGCAGGCGACCATCTTGTTAGCCACATACTTCTCGCTAGCCGGAT
CCTCGCCCACAATGACGGCCGTGAGATGGGGCTTCGGATAGCCAGCAGCC
TCCATTCCCTTGAGCTCGTGTGCTAGTTGGGTGCGCACCTCCTGGGCTAT
GGCCTTGCCATCGATAATTTGAGCCATGTTGCTTGTGAATCGCATGTCAA
CTGATAACT

BO07356.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG18466-PB 930 Nmdmc-RB 1..927 945..19 4635 100 Minus
CG18466-PA 912 Nmdmc-RA 1..909 927..19 4545 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
Nmdmc-RB 1257 CG18466-RB 179..1105 945..19 4635 100 Minus
Nmdmc-RA 1156 CG18466-RA 89..1004 934..19 4580 100 Minus
Nmdmc-RC 1233 CG18466-RC 167..1081 933..19 4575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9042852..9043641 144..933 3950 100 Plus
3R 32079331 3R 9042660..9042793 19..152 655 99.3 Plus
3R 32079331 3R 10701025..10701134 171..62 220 80 Minus
Blast to na_te.dros performed on 2015-02-13 05:29:28 has no hits.

BO07356.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:19 Download gff for BO07356.3prime
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-PB 1..930 16..945 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:43 Download gff for BO07356.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18466-PB 1..930 16..945 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:03:17 Download gff for BO07356.3prime
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 179..1113 11..945 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:51 Download gff for BO07356.3prime
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 179..1113 11..945 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:51 Download gff for BO07356.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9042652..9042784 11..143 97 <- Plus
3R 9042852..9043639 144..931 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:03:17 Download gff for BO07356.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4868374..4868506 11..143 97 <- Plus
arm_3R 4868574..4869361 144..931 100 <- Plus

BO07356.5prime Sequence

904 bp (800 high quality bases) assembled on 2005-12-04

> BO07356.5prime
GAAGTTATCAGTCGACATGCGATTCACAAGCAACATGGCTCAAATTATCG
ATGGCAAGGCCATAGCCCAGGAGGTGCGCACCCAACTAGCACACGAGCTC
AAGGGAATGGAGGCTGCTGGCTATCCGAAGCCCCATCTCACGGCCGTCAT
TGTGGGCGAGGATCCGGCTAGCGAGAAGTATGTGGCTAACAAGATGGTCG
CCTGCCGGGAGGTGGGCATCTCCAGTGAGACCAAGAGATTGCCCGCCTCT
ACCACGCAGGAGGAGCTGCTGCAACTGATTGCCGATCTGAACAAGGATCC
CCAGGTCACGGGGATACTGGTGCAGCTGCCGGTACCCGAGCACATCAATG
AGCGCACCATCTGCAATGCCGTCGATGTGGACAAGGATGTGGATGGCTTC
AATGAGGTCAACATCGGACGCACGGCTCTGGACATGGAGGCCAATATTCC
GGCCACGCCGCTGGGAGTCAAGCGACTGTTGGAGCATATGAAAATCGAAA
CTCTCGGTCGTAACGCCGTTGTGGTGGGACGCTCCAAGAATGTCAGTCTA
CCGATGGCAATCTTGCTGCACGCGGATGGCAAGTATGCCACCAAGGCAAT
GGATGCCACGGTGACCATCTGCCACAGGTATACACCGCCCAAGGAACTGG
CTCGCCATTGCCGCCAAGCGGATATCATTGTGGTCGCAGTGGGAAAGCCG
GGTTTGATCACCAAGGACATGGTTAAGCCCGGAGCCTGTGTCATCGACGT
GGGCATCAACCGCATCAAGGATGAGAGCACTGGCCAGTTTAAGCTGGTCG
GAGACGTGGACTTTGAAGAAGTTCGCCAGGTCGCCGGCCACATCACTCCT
GTGCCCGGCGGAAGTGGTCCCATGACGGTGGGCATGCTGATGCACAACAC
GCTG

BO07356.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG18466-PB 930 Nmdmc-RB 1..888 17..904 4365 99.6 Plus
CG18466-PA 912 Nmdmc-RA 1..870 35..904 4275 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
Nmdmc-RB 1257 CG18466-RB 179..1066 17..904 4395 99.7 Plus
Nmdmc-RA 1156 CG18466-RA 89..965 28..904 4340 99.7 Plus
Nmdmc-RC 1233 CG18466-RC 167..1042 29..904 4335 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9042852..9043641 818..29 3950 100 Minus
3R 32079331 3R 9042699..9042793 904..810 415 95.8 Minus
Blast to na_te.dros performed on 2015-02-11 17:16:17 has no hits.

BO07356.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:20 Download gff for BO07356.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-PB 1..888 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:44 Download gff for BO07356.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18466-PB 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:02 Download gff for BO07356.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 174..1066 12..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:02 Download gff for BO07356.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 174..1066 12..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:02 Download gff for BO07356.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9042699..9042784 819..904 96 <- Minus
3R 9042852..9043639 31..818 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:02 Download gff for BO07356.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4868421..4868506 819..904 96 <- Minus
arm_3R 4868574..4869361 31..818 100 <- Minus

BO07356.complete Sequence

961 bp (961 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630758

> BO07356.complete
GAAGTTATCAGTCGACATGCGATTCACAAGCAACATGGCTCAAATTATCG
ATGGCAAGGCCATAGCCCAGGAGGTGCGCACCCAACTAGCACACGAGCTC
AAGGGAATGGAGGCTGCTGGCTATCCGAAGCCCCATCTCACGGCCGTCAT
TGTGGGCGAGGATCCGGCTAGCGAGAAGTATGTGGCTAACAAGATGGTCG
CCTGCCGGGAGGTGGGCATCTCCAGTGAGACCAAGAGATTGCCCGCCTCT
ACCACGCAGGAGGAGCTGCTGCAACTGATTGCCGATCTGAACAAGGATCC
CCAGGTCACGGGGATACTGGTGCAGCTGCCGGTACCCGAGCACATCAATG
AGCGCACCATCTGCAATGCCGTCGATGTGGACAAGGATGTGGATGGCTTC
AATGAGGTCAACATCGGACGCACGGCTCTGGACATGGAGGCCAATATTCC
GGCCACGCCGCTGGGAGTCAAGCGACTGTTGGAGCATATGAAAATCGAAA
CTCTCGGTCGTAACGCCGTTGTGGTGGGACGCTCCAAGAATGTCAGTCTA
CCGATGGCAATCTTGCTGCACGCGGATGGCAAGTATGCCACCAAGGCAAT
GGATGCCACGGTGACCATCTGCCACAGGTATACACCGCCCAAGGAACTGG
CTCGCCATTGCCGCCAAGCGGATATCATTGTGGTCGCAGTGGGAAAGCCG
GGTTTGATCACCAAGGACATGGTTAAGCCCGGAGCCTGTGTCATCGACGT
GGGCATCAACCGCATCAAGGATGAGAGCACTGGCCAGTTTAAGCTGGTCG
GAGACGTGGACTTTGAAGAAGTTCGCCAGGTCGCCGGCCACATCACTCCT
GTGCCCGGCGGAGTTGGTCCCATGACGGTGGCCATGCTGATGCACAACAC
GCTGAAGGCAGCCAGGAAGCAGTTCGATGATCGCAAGTCCTCCGCAAGCT
TTCTAGACCAT

BO07356.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Nmdmc-RB 930 CG18466-PB 1..927 17..943 4635 100 Plus
Nmdmc-RC 912 CG18466-PC 1..909 35..943 4545 100 Plus
Nmdmc-RA 912 CG18466-PA 1..909 35..943 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
Nmdmc-RB 1257 CG18466-RB 179..1105 17..943 4635 100 Plus
Nmdmc-RA 1156 CG18466-RA 89..1004 28..943 4580 100 Plus
Nmdmc-RC 1233 CG18466-RC 167..1081 29..943 4575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9042852..9043641 818..29 3950 100 Minus
3R 32079331 3R 9042660..9042793 943..810 655 99.3 Minus
3R 32079331 3R 10701025..10701134 791..900 220 80 Plus
Blast to na_te.dros performed on 2014-11-27 14:35:46 has no hits.

BO07356.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:52 Download gff for BO07356.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 1..930 17..946 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:55 Download gff for BO07356.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 168..1107 12..951 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:20 Download gff for BO07356.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 179..1105 17..945 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:52 Download gff for BO07356.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 168..1107 12..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:55 Download gff for BO07356.complete
Subject Subject Range Query Range Percent Splice Strand
Nmdmc-RB 179..1105 17..945 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:55 Download gff for BO07356.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9042657..9042784 819..945 98 <- Minus
3R 9042852..9043639 31..818 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:20 Download gff for BO07356.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4868379..4868506 819..945 98 <- Minus
arm_3R 4868574..4869361 31..818 100 <- Minus

BO07356.pep Sequence

Translation from 16 to 961

> BO07356.pep
MRFTSNMAQIIDGKAIAQEVRTQLAHELKGMEAAGYPKPHLTAVIVGEDP
ASEKYVANKMVACREVGISSETKRLPASTTQEELLQLIADLNKDPQVTGI
LVQLPVPEHINERTICNAVDVDKDVDGFNEVNIGRTALDMEANIPATPLG
VKRLLEHMKIETLGRNAVVVGRSKNVSLPMAILLHADGKYATKAMDATVT
ICHRYTPPKELARHCRQADIIVVAVGKPGLITKDMVKPGACVIDVGINRI
KDESTGQFKLVGDVDFEEVRQVAGHITPVPGGVGPMTVAMLMHNTLKAAR
KQFDDRKSSASFLDH

BO07356.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
Nmdmc-PB 309 CG18466-PB 1..309 1..309 1576 100 Plus
Nmdmc-PC 303 CG18466-PC 1..303 7..309 1545 100 Plus
Nmdmc-PA 303 CG18466-PA 1..303 7..309 1545 100 Plus
pug-PC 934 CG4067-PC 4..292 8..301 551 45.3 Plus
pug-PA 934 CG4067-PA 4..292 8..301 551 45.3 Plus