Clone Sequence Records
BO07356.3prime Sequence
959 bp (757 high quality bases) assembled on 2005-12-04
> BO07356.3prime
ATGGTCTAGAAAGCTTGCGGAGGACTTGCGATCATCGAACTGCTTCCTGG
CTGCCTTCAGCGTGTTGTGCATCAGCATGGCCACCGTCATGGGACCAACT
CCGCCGGGCACAGGAGTGATGTGGCCGGCGACCTGGCGAACTTCTTCAAA
GTCCACGTCTCCGACCAGCTTAAACTGGCCAGTGCTCTCATCCTTGATGC
GGTTGATGCCCACGTCGATGACACAGGCTCCGGGCTTAACCATGTCCTTG
GTGATCAAACCCGGCTTTCCCACTGCGACCACAATGATATCCGCTTGGCG
GCAATGGCGAGCCAGTTCCTTGGGCGGTGTATACCTGTGGCAGATGGTCA
CCGTGGCATCCATTGCCTTGGTGGCATACTTGCCATCCGCGTGCAGCAAG
ATTGCCATCGGTAGACTGACATTCTTGGAGCGTCCCACCACAACGGCGTT
ACGACCGAGAGTTTCGATTTTCATATGCTCCAACAGTCGCTTGACTCCCA
GCGGCGTGGCCGGAATATTGGCCTCCATGTCCAGAGCCGTGCGTCCGATG
TTGACCTCATTGAAGCCATCCACATCCTTGTCCACATCGACGGCATTGCA
GATGGTGCGCTCATTGATGTGCTCGGGTACCGGCAGCTGCACCAGTATCC
CCGTGACCTGGGGATCCTTGTTCAGATCGGCAATCAGTTGCAGCAGCTCC
TCCTGCGTGGTAGAGGCGGGCAATCTCTTGGTCTCACTGGAGATGCCCAC
CTCCCGGCAGGCGACCATCTTGTTAGCCACATACTTCTCGCTAGCCGGAT
CCTCGCCCACAATGACGGCCGTGAGATGGGGCTTCGGATAGCCAGCAGCC
TCCATTCCCTTGAGCTCGTGTGCTAGTTGGGTGCGCACCTCCTGGGCTAT
GGCCTTGCCATCGATAATTTGAGCCATGTTGCTTGTGAATCGCATGTCAA
CTGATAACT
BO07356.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18466-PB | 930 | Nmdmc-RB | 1..927 | 945..19 | 4635 | 100 | Minus |
CG18466-PA | 912 | Nmdmc-RA | 1..909 | 927..19 | 4545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:29:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmdmc-RB | 1257 | CG18466-RB | 179..1105 | 945..19 | 4635 | 100 | Minus |
Nmdmc-RA | 1156 | CG18466-RA | 89..1004 | 934..19 | 4580 | 100 | Minus |
Nmdmc-RC | 1233 | CG18466-RC | 167..1081 | 933..19 | 4575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9042852..9043641 | 144..933 | 3950 | 100 | Plus |
3R | 32079331 | 3R | 9042660..9042793 | 19..152 | 655 | 99.3 | Plus |
3R | 32079331 | 3R | 10701025..10701134 | 171..62 | 220 | 80 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:29:28 has no hits.
BO07356.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:19 Download gff for
BO07356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-PB | 1..930 | 16..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:43 Download gff for
BO07356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18466-PB | 1..930 | 16..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:03:17 Download gff for
BO07356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 179..1113 | 11..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:51 Download gff for
BO07356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 179..1113 | 11..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:51 Download gff for
BO07356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9042652..9042784 | 11..143 | 97 | <- | Plus |
3R | 9042852..9043639 | 144..931 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:03:17 Download gff for
BO07356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4868374..4868506 | 11..143 | 97 | <- | Plus |
arm_3R | 4868574..4869361 | 144..931 | 100 | <- | Plus |
BO07356.5prime Sequence
904 bp (800 high quality bases) assembled on 2005-12-04
> BO07356.5prime
GAAGTTATCAGTCGACATGCGATTCACAAGCAACATGGCTCAAATTATCG
ATGGCAAGGCCATAGCCCAGGAGGTGCGCACCCAACTAGCACACGAGCTC
AAGGGAATGGAGGCTGCTGGCTATCCGAAGCCCCATCTCACGGCCGTCAT
TGTGGGCGAGGATCCGGCTAGCGAGAAGTATGTGGCTAACAAGATGGTCG
CCTGCCGGGAGGTGGGCATCTCCAGTGAGACCAAGAGATTGCCCGCCTCT
ACCACGCAGGAGGAGCTGCTGCAACTGATTGCCGATCTGAACAAGGATCC
CCAGGTCACGGGGATACTGGTGCAGCTGCCGGTACCCGAGCACATCAATG
AGCGCACCATCTGCAATGCCGTCGATGTGGACAAGGATGTGGATGGCTTC
AATGAGGTCAACATCGGACGCACGGCTCTGGACATGGAGGCCAATATTCC
GGCCACGCCGCTGGGAGTCAAGCGACTGTTGGAGCATATGAAAATCGAAA
CTCTCGGTCGTAACGCCGTTGTGGTGGGACGCTCCAAGAATGTCAGTCTA
CCGATGGCAATCTTGCTGCACGCGGATGGCAAGTATGCCACCAAGGCAAT
GGATGCCACGGTGACCATCTGCCACAGGTATACACCGCCCAAGGAACTGG
CTCGCCATTGCCGCCAAGCGGATATCATTGTGGTCGCAGTGGGAAAGCCG
GGTTTGATCACCAAGGACATGGTTAAGCCCGGAGCCTGTGTCATCGACGT
GGGCATCAACCGCATCAAGGATGAGAGCACTGGCCAGTTTAAGCTGGTCG
GAGACGTGGACTTTGAAGAAGTTCGCCAGGTCGCCGGCCACATCACTCCT
GTGCCCGGCGGAAGTGGTCCCATGACGGTGGGCATGCTGATGCACAACAC
GCTG
BO07356.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18466-PB | 930 | Nmdmc-RB | 1..888 | 17..904 | 4365 | 99.6 | Plus |
CG18466-PA | 912 | Nmdmc-RA | 1..870 | 35..904 | 4275 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:16:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmdmc-RB | 1257 | CG18466-RB | 179..1066 | 17..904 | 4395 | 99.7 | Plus |
Nmdmc-RA | 1156 | CG18466-RA | 89..965 | 28..904 | 4340 | 99.7 | Plus |
Nmdmc-RC | 1233 | CG18466-RC | 167..1042 | 29..904 | 4335 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:16:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9042852..9043641 | 818..29 | 3950 | 100 | Minus |
3R | 32079331 | 3R | 9042699..9042793 | 904..810 | 415 | 95.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:16:17 has no hits.
BO07356.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:20 Download gff for
BO07356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-PB | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:44 Download gff for
BO07356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18466-PB | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:02 Download gff for
BO07356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 174..1066 | 12..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:02 Download gff for
BO07356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 174..1066 | 12..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:02 Download gff for
BO07356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9042699..9042784 | 819..904 | 96 | <- | Minus |
3R | 9042852..9043639 | 31..818 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:02 Download gff for
BO07356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4868421..4868506 | 819..904 | 96 | <- | Minus |
arm_3R | 4868574..4869361 | 31..818 | 100 | <- | Minus |
BO07356.complete Sequence
961 bp (961 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630758
> BO07356.complete
GAAGTTATCAGTCGACATGCGATTCACAAGCAACATGGCTCAAATTATCG
ATGGCAAGGCCATAGCCCAGGAGGTGCGCACCCAACTAGCACACGAGCTC
AAGGGAATGGAGGCTGCTGGCTATCCGAAGCCCCATCTCACGGCCGTCAT
TGTGGGCGAGGATCCGGCTAGCGAGAAGTATGTGGCTAACAAGATGGTCG
CCTGCCGGGAGGTGGGCATCTCCAGTGAGACCAAGAGATTGCCCGCCTCT
ACCACGCAGGAGGAGCTGCTGCAACTGATTGCCGATCTGAACAAGGATCC
CCAGGTCACGGGGATACTGGTGCAGCTGCCGGTACCCGAGCACATCAATG
AGCGCACCATCTGCAATGCCGTCGATGTGGACAAGGATGTGGATGGCTTC
AATGAGGTCAACATCGGACGCACGGCTCTGGACATGGAGGCCAATATTCC
GGCCACGCCGCTGGGAGTCAAGCGACTGTTGGAGCATATGAAAATCGAAA
CTCTCGGTCGTAACGCCGTTGTGGTGGGACGCTCCAAGAATGTCAGTCTA
CCGATGGCAATCTTGCTGCACGCGGATGGCAAGTATGCCACCAAGGCAAT
GGATGCCACGGTGACCATCTGCCACAGGTATACACCGCCCAAGGAACTGG
CTCGCCATTGCCGCCAAGCGGATATCATTGTGGTCGCAGTGGGAAAGCCG
GGTTTGATCACCAAGGACATGGTTAAGCCCGGAGCCTGTGTCATCGACGT
GGGCATCAACCGCATCAAGGATGAGAGCACTGGCCAGTTTAAGCTGGTCG
GAGACGTGGACTTTGAAGAAGTTCGCCAGGTCGCCGGCCACATCACTCCT
GTGCCCGGCGGAGTTGGTCCCATGACGGTGGCCATGCTGATGCACAACAC
GCTGAAGGCAGCCAGGAAGCAGTTCGATGATCGCAAGTCCTCCGCAAGCT
TTCTAGACCAT
BO07356.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmdmc-RB | 930 | CG18466-PB | 1..927 | 17..943 | 4635 | 100 | Plus |
Nmdmc-RC | 912 | CG18466-PC | 1..909 | 35..943 | 4545 | 100 | Plus |
Nmdmc-RA | 912 | CG18466-PA | 1..909 | 35..943 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmdmc-RB | 1257 | CG18466-RB | 179..1105 | 17..943 | 4635 | 100 | Plus |
Nmdmc-RA | 1156 | CG18466-RA | 89..1004 | 28..943 | 4580 | 100 | Plus |
Nmdmc-RC | 1233 | CG18466-RC | 167..1081 | 29..943 | 4575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9042852..9043641 | 818..29 | 3950 | 100 | Minus |
3R | 32079331 | 3R | 9042660..9042793 | 943..810 | 655 | 99.3 | Minus |
3R | 32079331 | 3R | 10701025..10701134 | 791..900 | 220 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:35:46 has no hits.
BO07356.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:52 Download gff for
BO07356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:55 Download gff for
BO07356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 168..1107 | 12..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:20 Download gff for
BO07356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 179..1105 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:52 Download gff for
BO07356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 168..1107 | 12..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:55 Download gff for
BO07356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmdmc-RB | 179..1105 | 17..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:55 Download gff for
BO07356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9042657..9042784 | 819..945 | 98 | <- | Minus |
3R | 9042852..9043639 | 31..818 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:20 Download gff for
BO07356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4868379..4868506 | 819..945 | 98 | <- | Minus |
arm_3R | 4868574..4869361 | 31..818 | 100 | <- | Minus |
BO07356.pep Sequence
Translation from 16 to 961
> BO07356.pep
MRFTSNMAQIIDGKAIAQEVRTQLAHELKGMEAAGYPKPHLTAVIVGEDP
ASEKYVANKMVACREVGISSETKRLPASTTQEELLQLIADLNKDPQVTGI
LVQLPVPEHINERTICNAVDVDKDVDGFNEVNIGRTALDMEANIPATPLG
VKRLLEHMKIETLGRNAVVVGRSKNVSLPMAILLHADGKYATKAMDATVT
ICHRYTPPKELARHCRQADIIVVAVGKPGLITKDMVKPGACVIDVGINRI
KDESTGQFKLVGDVDFEEVRQVAGHITPVPGGVGPMTVAMLMHNTLKAAR
KQFDDRKSSASFLDH
BO07356.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmdmc-PB | 309 | CG18466-PB | 1..309 | 1..309 | 1576 | 100 | Plus |
Nmdmc-PC | 303 | CG18466-PC | 1..303 | 7..309 | 1545 | 100 | Plus |
Nmdmc-PA | 303 | CG18466-PA | 1..303 | 7..309 | 1545 | 100 | Plus |
pug-PC | 934 | CG4067-PC | 4..292 | 8..301 | 551 | 45.3 | Plus |
pug-PA | 934 | CG4067-PA | 4..292 | 8..301 | 551 | 45.3 | Plus |