Clone BO07358 Report

Search the DGRC for BO07358

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:73
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG10732-RB
Protein status:BO07358.pep: Imported from assembly
Sequenced Size:2461

Clone Sequence Records

BO07358.5prime Sequence

888 bp (857 high quality bases) assembled on 2005-12-04

> BO07358.5prime
GAAGTTATCAGTCGACATGGTGCACGAAATCAACCCAAATTCGGATCAGG
GTGAAGGCGTAGTCAATTCGACCAGCTTGGAGGATGTTGCATTAAGCGAG
ATGAGCGACAACCGCGCCCAATCCATTCAGTCCCTACACAGCGTCTTGGA
AACGCCCACGCCCGATACCACGCCCAGCTTCGATGAGTTGCAGCAGCGCT
TGGAAGCCTCCAATAGGAACATGCAGCACCTGCACGACGAACAGGCGAAG
CTGTTACAAATCCAAAATTTGGCCAAGACTCACCTTAACGAGATGGAGCG
GCTGCGCCAGCAAGCCGATAGCTTACCCCACAATGTCAATGGGGGAGAGG
CCCCCAAATACGAGTCCGTGCAGCAGGTACAGGACGACATGGCGTCGCTG
GTGGGGCGCATGAAGAATCTCACCGCCTTTATACACAACCAGAACGAACT
GAGCACGGTGCTTGGCGATGATGGGCCCGAGATCCTGGCCGAGCAGGAAG
CCCTGCAGGAGAAACTGGAATCACTGCGCACCCAACGTGAGGATATGCGC
AATCTGGTGGACGAACTAAACAGCATCAACCGTGCGGCCAGGGAGACTGC
TAGAGTCATCAAAGAGAAAGAGGAGACTCCCACGCCTCCTCCCAAGCCAG
AGGAGGCTGCCCCAGCGGCTCCCAAGGAGCGTGTTGTTCCTGTGGAGTAT
CAGAGAAACGTACCCATCATACGCCAGGAGGCGGCCAACGCTGCTCAACG
GGCACTTCACGCACAGGCAATGATCAACCAGAAGACGGCAGATATAGAAG
CACTCAGGGCTCAGATGGCGAGACTAAAGGGAATGCTGTACACTGTTAGC
CAGATTGAAGAAAGTACTCCCAGCATGGGCTCCACCTT

BO07358.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10732-PA 4974 CG10732-RA 833..1706 15..888 4345 99.8 Plus
CG10732-PB 2430 CG10732-RB 1..872 17..888 4335 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10732-RD 5200 CG10732-RD 958..1831 15..888 4355 99.9 Plus
CG10732-RC 5206 CG10732-RC 958..1831 15..888 4355 99.9 Plus
CG10732-RB 3249 CG10732-RB 744..1617 15..888 4355 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13444366..13445155 99..888 3935 99.9 Plus
3L 28110227 3L 13444220..13444305 15..100 430 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:50:29 has no hits.

BO07358.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:22 Download gff for BO07358.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10732-PA 833..1706 15..888 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:47 Download gff for BO07358.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10732-PA 833..1706 15..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:52 Download gff for BO07358.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10732-RB 744..1617 15..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:32:22 Download gff for BO07358.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10732-RB 744..1617 15..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:32:22 Download gff for BO07358.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13444220..13444305 15..100 100 -> Plus
3L 13444368..13445155 101..888 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:52 Download gff for BO07358.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13437320..13437405 15..100 100 -> Plus
arm_3L 13437468..13438255 101..888 99   Plus

BO07358.3prime Sequence

908 bp (890 high quality bases) assembled on 2005-12-04

> BO07358.3prime
ATGGTCTAGAAAGCTTGCCCTGCGGAAGTTGTCCCAGTAGTTGTTGGCTC
TGTTTCCGGGTGGTACTTGATTGTTCAATGTAATACCGCCACCAGGTGCT
CCTCCACCAGCTGCTCCCTCGGGCAGCGAGTGCAGATTGTTGGCATGCTG
GTTCTGGGTTCGCAGATTCGAGTTGTTCTGATGTATCGTGTTGTTATGGT
GGTTCATGAAGATGGGACCTGGACTTGAGCGGTAAGTAGGCGGCGACAGG
GGTGTCTCGTTGTTGAAGTGCGTCGGCGGTGGCGGGGGAGCAGCATTGTT
AAGGAACGGCTGCGCCTGATGCTGCTGCTGTTGATGATGATGCGATTCTG
CCCCGCTACGATGACAGCTGCGCTGATAGTTACTAAAGGCGCTCTGGTGG
GCACCAAAGTTAAATAGCTGCTCAGATTGAGCTCGACTGCTGCCCAGGCA
CAGATTGTTGGGCATCTGACCCATTCCAGGGCCCACCGGAGGCGGTACTG
ATTCCGAGCGCAAGCCGAAGCTGTGATCCTGGCATGCTACAACATTAAAT
CGATCCTGGAGCGCATGTAGCTGGTGGTTGAGGTTGTCGATTTCGCGCTG
TTGATGCCACAGTGCCTGGTTGCACTGGCACACAGAGTTGATAAGCATTT
GCTGCGTCTGCATGAACTGCTGCAGCAGAACTGCGTCGGTAGAGGCATTC
GATCCGGATCCATTTGAGGAGCCCCCTTGTTGGGCGGCTGGCAGCTTTTT
AAACTCTGTGCCGGCACTGGAGCTCGGCTGACCGTAGACGGGCTGCTGTC
CATGCCACGAACTTCCAGAGTTGTGTGATGCCCACATTCCAGGCACTGGT
TGCATGGGGGGCGGCATGTACTGCGATCTATTGCTGCTGGATGGTATGCT
GTCATTAC

BO07358.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10732-PB 2430 CG10732-RB 1538..2427 908..19 4450 100 Minus
CG10732-PA 4974 CG10732-RA 2372..3260 908..20 4445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10732-RB 3249 CG10732-RB 2283..3172 908..19 4450 100 Minus
CG10732-RD 5200 CG10732-RD 2398..3286 908..20 4445 100 Minus
CG10732-RA 5299 CG10732-RA 2497..3385 908..20 4445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13446341..13446884 562..19 2720 100 Minus
3L 28110227 3L 13446011..13446280 831..562 1350 100 Minus
3L 28110227 3L 13445821..13445898 908..831 390 100 Minus
Blast to na_te.dros performed 2015-02-13 12:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2541 351..136 146 57.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6818 350..309 122 79.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6826..7094 349..92 114 56.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2773..2846 381..307 111 62.7 Minus

BO07358.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:21 Download gff for BO07358.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10732-PB 1538..2430 15..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:46 Download gff for BO07358.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10732-PB 1538..2430 15..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:48 Download gff for BO07358.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10732-RB 2283..3186 4..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:30:47 Download gff for BO07358.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10732-RB 2283..3186 4..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:30:47 Download gff for BO07358.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13445821..13445898 831..908 100 -> Minus
3L 13446012..13446280 562..830 100 -> Minus
3L 13446342..13446888 14..561 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:48 Download gff for BO07358.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13438921..13438998 831..908 100 -> Minus
arm_3L 13439112..13439380 562..830 100 -> Minus
arm_3L 13439442..13439988 14..561 99 -> Minus

BO07358.complete Sequence

2461 bp assembled on 2008-08-14

GenBank Submission: FJ630759

> BO07358.complete
GAAGTTATCAGTCGACATGGTGCACGAAATCAACCCAAATTCGGATCAGG
GTGAAGGCGTAGTCAATTCGACCAGCTTGGAGGATGTTGCATTAAGCGAG
ATGAGCGACAACCGCGCCCAATCCATTCAGTCCCTACACAGCGTCTTGGA
AACGCCCACGCCCGATACCACGCCCAGCTTCGATGAGTTGCAGCAGCGCT
TGGAAGCCTCCAATAGGAACATGCAGCACCTGCACGACGAACAGGCGAAG
CTGTTACAAATCCAAAATTTGGCCAAGACTCACCTTAACGAGATGGAGCG
GCTGCGCCAGCAAGCCGATAGCTTACCCCACAATGTCAATGGGGGAGAGG
CCCCCAAATACGAGTCCGTGCAGCAGGTACAGGACGACATGGCGTCGCTG
GTGGGGCGCATGAAGAATCTCACCGCCTTTATACACAACCAGAACGAACT
GAGCACGGTGCTTGGCGATGATGGGCCCGAGATCCTGGCCGAGCAGGAAG
CCCTGCAGGAGAAACTGGAATCACTGCGCACCCAACGTGAGGATATGCGC
AATCTGGTGGACGAACTAAACAGCATCAACCGTGCGGCCAGGGAGACTGC
TAGAGTCATCAAAGAGAAAGAGGAGACTCCCACGCCTCCTCCCAAGCCAG
AGGAGGCTGCCCCAGCGGCTCCCAAGGAGCGTGTTGTTCCTGTGGAGTAT
CAGAGAAACGTACCCATCATACGCCAGGAGGCGGCCAACGCTGCTCAACG
GGCACTTCACGCACAGGCAATGATCAACCAGAAGACGGCAGATATAGAAG
CACTCAAGGCTCAGATGGCGAGACTAAAGGGAATGCTGTACACTGTTAGC
CAGATTGAAGAAAGTACTCCCAGCATGGGCTCCACCTTAGAGCGGCGTAG
TGAGGAAAGAACTAGCGTGGAGCGCGAATTGCCGGCCGAGATTGCCCAGC
GCGTATTCGCTCTGAACGATGTTACGAGCGAACTGAGAGCGGAAGCAGCA
AGCTTGCAAAAGGAGCGTGACCGTATCCTAGCCCTGAAGGCAGAGATTGA
GCGACGCAAACAACAGGCGGCCGCCGCTGTTCAAATGGGCGATGATGCAC
TTAAAAGAAGCAGTCTTACCCCAACACCCACCCCCATGAGACAGCGGATG
ACCGAGGAAGAGGATCCATCCGAAGTGGATAATTCTCTTCAGGCTACGCC
CACCAAGGAACAACTGCGCGATGAACTGCGCTCGCAGTGCGAGCGCCTGC
GAACGGAATACGAGCAGAAGCAGCGGGAACTGGAGCAGCGTTACGTAGCC
AGTAACAACACCACATCGGAGGCGGATGACGAGGCAAACGACGACACTGA
CAGCGATAAGTACTTCGCCAACGTACGTACCGCTTCCTCAGCGACCCTAA
AGAGGGCTCCATCCGCCAACACAGTGGTGGAGCAACGACGAGGTCAGCAA
CCTAACGTTCCCCCACAGCAGGCACCACCACCACCGCCGCCTGCTCCTCC
GTCGACGCTAAACGAAGATGACCTGAATGTGACACTTGATACGCTATCCC
TGGGTAATGACAGCATACCATCCAGCAGCAATAGATCGCAGTACATGCCG
CCCCCCATGCAACCAGTGCCTGGAATGTGGGCATCACACAACTCTGGAAG
TTCGTGGCATGGACAGCAGCCCGTCTACGGTCAGCCGAGCTCCAGTGCCG
GCACAGAGTTTAAAAAGCTGCCAGCCGCCCAACAAGGGGGCTCCTCAAAT
GGATCCGGATCGAATGCCTCTACCGACGCAGTTCTGCTGCAGCAGTTCAT
GCAGACGCAGCAAATGCTTATCAACTCTGTGTGCCAGTGCAACCAGGCAC
TGTGGCATCAACAGCGCGAAATCGACAACCTCAACCACCAGCTACATGCG
CTCCAGGATCGATTTAATGTTGTAGCATGCCAGGATCACAGCTTCGGCTT
GCGCTCGGAATCAGTACCGCCTCCGGTGGGCCCTGGAATGGGTCAGATGC
CCAACAATCTGTGCCTGGGCAGCAGTCGAGCTCAATCTGAGCAGCTATTT
AACTTTGGTGCCCACCAGAGCGCCTTTAGTAACTATCAGCGCAGCTGTCA
TCGTAGCGGGGCAGAATCGCATCATCATCAACAGCAGCAGCATCAGGCGC
AGCCGTTCCTTAACAATGCTGCTCCCCCGCCACCGCCGACGCACTTCAAC
AACGAGACACCCCTGTCGCCGCCTACTTACCGCTCAAGTCCAGGTCCCAT
CTTCATGAACCACCATAACAACACGATACATCAGAACAACTCGAATCTGC
GAACCCAGAACCAGCATGCCAACAATCTGCACTCGCTGCCCGAGGGAGCA
GCTGGTGGAGGAGCACCTGGTGGCGGTATTACATTGAACAATCAAGTACC
ACCCGGAAACAGAGCCAACAACTACTGGGACAACTTCCGCAGGGCAAGCT
TTCTAGACCAT

BO07358.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10732-RA 4974 CG10732-PA 833..3260 15..2442 12140 100 Plus
CG10732-RB 2430 CG10732-PB 1..2427 17..2443 12135 100 Plus
CG10732-RD 4875 CG10732-PD 833..2191 15..1373 6795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10732-RB 3249 CG10732-RB 744..3172 15..2443 12145 100 Plus
CG10732-RA 5299 CG10732-RA 958..3385 15..2442 12140 100 Plus
CG10732-RD 5200 CG10732-RD 958..2316 15..1373 6795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13444366..13445898 99..1631 7665 100 Plus
3L 28110227 3L 13446341..13446884 1900..2443 2720 100 Plus
3L 28110227 3L 13446011..13446280 1631..1900 1350 100 Plus
3L 28110227 3L 13444220..13444305 15..100 430 100 Plus
Blast to na_te.dros performed 2014-11-28 01:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2541 2111..2326 146 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6818 2112..2153 122 79.1 Plus

BO07358.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:21 Download gff for BO07358.complete
Subject Subject Range Query Range Percent Splice Strand
CG10732-RB 731..3173 15..2458 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:05:15 Download gff for BO07358.complete
Subject Subject Range Query Range Percent Splice Strand
CG10732-RB 746..3172 17..2445 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:42 Download gff for BO07358.complete
Subject Subject Range Query Range Percent Splice Strand
CG10732-RB 733..3159 17..2445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:33 Download gff for BO07358.complete
Subject Subject Range Query Range Percent Splice Strand
CG10732-RB 746..3172 17..2445 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:33 Download gff for BO07358.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13444222..13444305 17..100 100 -> Plus
3L 13444368..13445898 101..1631 100 -> Plus
3L 13446012..13446280 1632..1900 100 -> Plus
3L 13446342..13446884 1901..2445 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:05:15 Download gff for BO07358.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13437322..13437405 17..100 100 -> Plus
arm_3L 13437468..13438998 101..1631 100 -> Plus
arm_3L 13439112..13439380 1632..1900 100 -> Plus
arm_3L 13439442..13439984 1901..2445 99   Plus

BO07358.pep Sequence

Translation from 16 to 2461

> BO07358.pep
MVHEINPNSDQGEGVVNSTSLEDVALSEMSDNRAQSIQSLHSVLETPTPD
TTPSFDELQQRLEASNRNMQHLHDEQAKLLQIQNLAKTHLNEMERLRQQA
DSLPHNVNGGEAPKYESVQQVQDDMASLVGRMKNLTAFIHNQNELSTVLG
DDGPEILAEQEALQEKLESLRTQREDMRNLVDELNSINRAARETARVIKE
KEETPTPPPKPEEAAPAAPKERVVPVEYQRNVPIIRQEAANAAQRALHAQ
AMINQKTADIEALKAQMARLKGMLYTVSQIEESTPSMGSTLERRSEERTS
VERELPAEIAQRVFALNDVTSELRAEAASLQKERDRILALKAEIERRKQQ
AAAAVQMGDDALKRSSLTPTPTPMRQRMTEEEDPSEVDNSLQATPTKEQL
RDELRSQCERLRTEYEQKQRELEQRYVASNNTTSEADDEANDDTDSDKYF
ANVRTASSATLKRAPSANTVVEQRRGQQPNVPPQQAPPPPPPAPPSTLNE
DDLNVTLDTLSLGNDSIPSSSNRSQYMPPPMQPVPGMWASHNSGSSWHGQ
QPVYGQPSSSAGTEFKKLPAAQQGGSSNGSGSNASTDAVLLQQFMQTQQM
LINSVCQCNQALWHQQREIDNLNHQLHALQDRFNVVACQDHSFGLRSESV
PPPVGPGMGQMPNNLCLGSSRAQSEQLFNFGAHQSAFSNYQRSCHRSGAE
SHHHQQQQHQAQPFLNNAAPPPPPTHFNNETPLSPPTYRSSPGPIFMNHH
NNTIHQNNSNLRTQNQHANNLHSLPEGAAGGGAPGGGITLNNQVPPGNRA
NNYWDNFRRASFLDH

BO07358.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10732-PB 809 CG10732-PB 1..809 1..809 4203 100 Plus
CG10732-PA 1657 CG10732-PA 279..1089 1..811 4199 99.8 Plus
CG10732-PD 1624 CG10732-PD 279..1056 1..811 3991 95.7 Plus
CG10732-PC 1626 CG10732-PC 279..1058 1..811 3985 95.7 Plus