Clone Sequence Records
BO07358.5prime Sequence
888 bp (857 high quality bases) assembled on 2005-12-04
> BO07358.5prime
GAAGTTATCAGTCGACATGGTGCACGAAATCAACCCAAATTCGGATCAGG
GTGAAGGCGTAGTCAATTCGACCAGCTTGGAGGATGTTGCATTAAGCGAG
ATGAGCGACAACCGCGCCCAATCCATTCAGTCCCTACACAGCGTCTTGGA
AACGCCCACGCCCGATACCACGCCCAGCTTCGATGAGTTGCAGCAGCGCT
TGGAAGCCTCCAATAGGAACATGCAGCACCTGCACGACGAACAGGCGAAG
CTGTTACAAATCCAAAATTTGGCCAAGACTCACCTTAACGAGATGGAGCG
GCTGCGCCAGCAAGCCGATAGCTTACCCCACAATGTCAATGGGGGAGAGG
CCCCCAAATACGAGTCCGTGCAGCAGGTACAGGACGACATGGCGTCGCTG
GTGGGGCGCATGAAGAATCTCACCGCCTTTATACACAACCAGAACGAACT
GAGCACGGTGCTTGGCGATGATGGGCCCGAGATCCTGGCCGAGCAGGAAG
CCCTGCAGGAGAAACTGGAATCACTGCGCACCCAACGTGAGGATATGCGC
AATCTGGTGGACGAACTAAACAGCATCAACCGTGCGGCCAGGGAGACTGC
TAGAGTCATCAAAGAGAAAGAGGAGACTCCCACGCCTCCTCCCAAGCCAG
AGGAGGCTGCCCCAGCGGCTCCCAAGGAGCGTGTTGTTCCTGTGGAGTAT
CAGAGAAACGTACCCATCATACGCCAGGAGGCGGCCAACGCTGCTCAACG
GGCACTTCACGCACAGGCAATGATCAACCAGAAGACGGCAGATATAGAAG
CACTCAGGGCTCAGATGGCGAGACTAAAGGGAATGCTGTACACTGTTAGC
CAGATTGAAGAAAGTACTCCCAGCATGGGCTCCACCTT
BO07358.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10732-PA | 4974 | CG10732-RA | 833..1706 | 15..888 | 4345 | 99.8 | Plus |
CG10732-PB | 2430 | CG10732-RB | 1..872 | 17..888 | 4335 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10732-RD | 5200 | CG10732-RD | 958..1831 | 15..888 | 4355 | 99.9 | Plus |
CG10732-RC | 5206 | CG10732-RC | 958..1831 | 15..888 | 4355 | 99.9 | Plus |
CG10732-RB | 3249 | CG10732-RB | 744..1617 | 15..888 | 4355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13444366..13445155 | 99..888 | 3935 | 99.9 | Plus |
3L | 28110227 | 3L | 13444220..13444305 | 15..100 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:50:29 has no hits.
BO07358.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:22 Download gff for
BO07358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10732-PA | 833..1706 | 15..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:47 Download gff for
BO07358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10732-PA | 833..1706 | 15..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:52 Download gff for
BO07358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10732-RB | 744..1617 | 15..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:32:22 Download gff for
BO07358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10732-RB | 744..1617 | 15..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:32:22 Download gff for
BO07358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13444220..13444305 | 15..100 | 100 | -> | Plus |
3L | 13444368..13445155 | 101..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:52 Download gff for
BO07358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13437320..13437405 | 15..100 | 100 | -> | Plus |
arm_3L | 13437468..13438255 | 101..888 | 99 | | Plus |
BO07358.3prime Sequence
908 bp (890 high quality bases) assembled on 2005-12-04
> BO07358.3prime
ATGGTCTAGAAAGCTTGCCCTGCGGAAGTTGTCCCAGTAGTTGTTGGCTC
TGTTTCCGGGTGGTACTTGATTGTTCAATGTAATACCGCCACCAGGTGCT
CCTCCACCAGCTGCTCCCTCGGGCAGCGAGTGCAGATTGTTGGCATGCTG
GTTCTGGGTTCGCAGATTCGAGTTGTTCTGATGTATCGTGTTGTTATGGT
GGTTCATGAAGATGGGACCTGGACTTGAGCGGTAAGTAGGCGGCGACAGG
GGTGTCTCGTTGTTGAAGTGCGTCGGCGGTGGCGGGGGAGCAGCATTGTT
AAGGAACGGCTGCGCCTGATGCTGCTGCTGTTGATGATGATGCGATTCTG
CCCCGCTACGATGACAGCTGCGCTGATAGTTACTAAAGGCGCTCTGGTGG
GCACCAAAGTTAAATAGCTGCTCAGATTGAGCTCGACTGCTGCCCAGGCA
CAGATTGTTGGGCATCTGACCCATTCCAGGGCCCACCGGAGGCGGTACTG
ATTCCGAGCGCAAGCCGAAGCTGTGATCCTGGCATGCTACAACATTAAAT
CGATCCTGGAGCGCATGTAGCTGGTGGTTGAGGTTGTCGATTTCGCGCTG
TTGATGCCACAGTGCCTGGTTGCACTGGCACACAGAGTTGATAAGCATTT
GCTGCGTCTGCATGAACTGCTGCAGCAGAACTGCGTCGGTAGAGGCATTC
GATCCGGATCCATTTGAGGAGCCCCCTTGTTGGGCGGCTGGCAGCTTTTT
AAACTCTGTGCCGGCACTGGAGCTCGGCTGACCGTAGACGGGCTGCTGTC
CATGCCACGAACTTCCAGAGTTGTGTGATGCCCACATTCCAGGCACTGGT
TGCATGGGGGGCGGCATGTACTGCGATCTATTGCTGCTGGATGGTATGCT
GTCATTAC
BO07358.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10732-PB | 2430 | CG10732-RB | 1538..2427 | 908..19 | 4450 | 100 | Minus |
CG10732-PA | 4974 | CG10732-RA | 2372..3260 | 908..20 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10732-RB | 3249 | CG10732-RB | 2283..3172 | 908..19 | 4450 | 100 | Minus |
CG10732-RD | 5200 | CG10732-RD | 2398..3286 | 908..20 | 4445 | 100 | Minus |
CG10732-RA | 5299 | CG10732-RA | 2497..3385 | 908..20 | 4445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13446341..13446884 | 562..19 | 2720 | 100 | Minus |
3L | 28110227 | 3L | 13446011..13446280 | 831..562 | 1350 | 100 | Minus |
3L | 28110227 | 3L | 13445821..13445898 | 908..831 | 390 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 12:50:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2541 | 351..136 | 146 | 57.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6818 | 350..309 | 122 | 79.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..7094 | 349..92 | 114 | 56.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2773..2846 | 381..307 | 111 | 62.7 | Minus |
BO07358.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:21 Download gff for
BO07358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10732-PB | 1538..2430 | 15..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:46 Download gff for
BO07358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10732-PB | 1538..2430 | 15..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:48 Download gff for
BO07358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10732-RB | 2283..3186 | 4..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:30:47 Download gff for
BO07358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10732-RB | 2283..3186 | 4..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:30:47 Download gff for
BO07358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13445821..13445898 | 831..908 | 100 | -> | Minus |
3L | 13446012..13446280 | 562..830 | 100 | -> | Minus |
3L | 13446342..13446888 | 14..561 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:48 Download gff for
BO07358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13438921..13438998 | 831..908 | 100 | -> | Minus |
arm_3L | 13439112..13439380 | 562..830 | 100 | -> | Minus |
arm_3L | 13439442..13439988 | 14..561 | 99 | -> | Minus |
BO07358.complete Sequence
2461 bp assembled on 2008-08-14
GenBank Submission: FJ630759
> BO07358.complete
GAAGTTATCAGTCGACATGGTGCACGAAATCAACCCAAATTCGGATCAGG
GTGAAGGCGTAGTCAATTCGACCAGCTTGGAGGATGTTGCATTAAGCGAG
ATGAGCGACAACCGCGCCCAATCCATTCAGTCCCTACACAGCGTCTTGGA
AACGCCCACGCCCGATACCACGCCCAGCTTCGATGAGTTGCAGCAGCGCT
TGGAAGCCTCCAATAGGAACATGCAGCACCTGCACGACGAACAGGCGAAG
CTGTTACAAATCCAAAATTTGGCCAAGACTCACCTTAACGAGATGGAGCG
GCTGCGCCAGCAAGCCGATAGCTTACCCCACAATGTCAATGGGGGAGAGG
CCCCCAAATACGAGTCCGTGCAGCAGGTACAGGACGACATGGCGTCGCTG
GTGGGGCGCATGAAGAATCTCACCGCCTTTATACACAACCAGAACGAACT
GAGCACGGTGCTTGGCGATGATGGGCCCGAGATCCTGGCCGAGCAGGAAG
CCCTGCAGGAGAAACTGGAATCACTGCGCACCCAACGTGAGGATATGCGC
AATCTGGTGGACGAACTAAACAGCATCAACCGTGCGGCCAGGGAGACTGC
TAGAGTCATCAAAGAGAAAGAGGAGACTCCCACGCCTCCTCCCAAGCCAG
AGGAGGCTGCCCCAGCGGCTCCCAAGGAGCGTGTTGTTCCTGTGGAGTAT
CAGAGAAACGTACCCATCATACGCCAGGAGGCGGCCAACGCTGCTCAACG
GGCACTTCACGCACAGGCAATGATCAACCAGAAGACGGCAGATATAGAAG
CACTCAAGGCTCAGATGGCGAGACTAAAGGGAATGCTGTACACTGTTAGC
CAGATTGAAGAAAGTACTCCCAGCATGGGCTCCACCTTAGAGCGGCGTAG
TGAGGAAAGAACTAGCGTGGAGCGCGAATTGCCGGCCGAGATTGCCCAGC
GCGTATTCGCTCTGAACGATGTTACGAGCGAACTGAGAGCGGAAGCAGCA
AGCTTGCAAAAGGAGCGTGACCGTATCCTAGCCCTGAAGGCAGAGATTGA
GCGACGCAAACAACAGGCGGCCGCCGCTGTTCAAATGGGCGATGATGCAC
TTAAAAGAAGCAGTCTTACCCCAACACCCACCCCCATGAGACAGCGGATG
ACCGAGGAAGAGGATCCATCCGAAGTGGATAATTCTCTTCAGGCTACGCC
CACCAAGGAACAACTGCGCGATGAACTGCGCTCGCAGTGCGAGCGCCTGC
GAACGGAATACGAGCAGAAGCAGCGGGAACTGGAGCAGCGTTACGTAGCC
AGTAACAACACCACATCGGAGGCGGATGACGAGGCAAACGACGACACTGA
CAGCGATAAGTACTTCGCCAACGTACGTACCGCTTCCTCAGCGACCCTAA
AGAGGGCTCCATCCGCCAACACAGTGGTGGAGCAACGACGAGGTCAGCAA
CCTAACGTTCCCCCACAGCAGGCACCACCACCACCGCCGCCTGCTCCTCC
GTCGACGCTAAACGAAGATGACCTGAATGTGACACTTGATACGCTATCCC
TGGGTAATGACAGCATACCATCCAGCAGCAATAGATCGCAGTACATGCCG
CCCCCCATGCAACCAGTGCCTGGAATGTGGGCATCACACAACTCTGGAAG
TTCGTGGCATGGACAGCAGCCCGTCTACGGTCAGCCGAGCTCCAGTGCCG
GCACAGAGTTTAAAAAGCTGCCAGCCGCCCAACAAGGGGGCTCCTCAAAT
GGATCCGGATCGAATGCCTCTACCGACGCAGTTCTGCTGCAGCAGTTCAT
GCAGACGCAGCAAATGCTTATCAACTCTGTGTGCCAGTGCAACCAGGCAC
TGTGGCATCAACAGCGCGAAATCGACAACCTCAACCACCAGCTACATGCG
CTCCAGGATCGATTTAATGTTGTAGCATGCCAGGATCACAGCTTCGGCTT
GCGCTCGGAATCAGTACCGCCTCCGGTGGGCCCTGGAATGGGTCAGATGC
CCAACAATCTGTGCCTGGGCAGCAGTCGAGCTCAATCTGAGCAGCTATTT
AACTTTGGTGCCCACCAGAGCGCCTTTAGTAACTATCAGCGCAGCTGTCA
TCGTAGCGGGGCAGAATCGCATCATCATCAACAGCAGCAGCATCAGGCGC
AGCCGTTCCTTAACAATGCTGCTCCCCCGCCACCGCCGACGCACTTCAAC
AACGAGACACCCCTGTCGCCGCCTACTTACCGCTCAAGTCCAGGTCCCAT
CTTCATGAACCACCATAACAACACGATACATCAGAACAACTCGAATCTGC
GAACCCAGAACCAGCATGCCAACAATCTGCACTCGCTGCCCGAGGGAGCA
GCTGGTGGAGGAGCACCTGGTGGCGGTATTACATTGAACAATCAAGTACC
ACCCGGAAACAGAGCCAACAACTACTGGGACAACTTCCGCAGGGCAAGCT
TTCTAGACCAT
BO07358.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10732-RA | 4974 | CG10732-PA | 833..3260 | 15..2442 | 12140 | 100 | Plus |
CG10732-RB | 2430 | CG10732-PB | 1..2427 | 17..2443 | 12135 | 100 | Plus |
CG10732-RD | 4875 | CG10732-PD | 833..2191 | 15..1373 | 6795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10732-RB | 3249 | CG10732-RB | 744..3172 | 15..2443 | 12145 | 100 | Plus |
CG10732-RA | 5299 | CG10732-RA | 958..3385 | 15..2442 | 12140 | 100 | Plus |
CG10732-RD | 5200 | CG10732-RD | 958..2316 | 15..1373 | 6795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13444366..13445898 | 99..1631 | 7665 | 100 | Plus |
3L | 28110227 | 3L | 13446341..13446884 | 1900..2443 | 2720 | 100 | Plus |
3L | 28110227 | 3L | 13446011..13446280 | 1631..1900 | 1350 | 100 | Plus |
3L | 28110227 | 3L | 13444220..13444305 | 15..100 | 430 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2541 | 2111..2326 | 146 | 57.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6818 | 2112..2153 | 122 | 79.1 | Plus |
BO07358.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:21 Download gff for
BO07358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10732-RB | 731..3173 | 15..2458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:05:15 Download gff for
BO07358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10732-RB | 746..3172 | 17..2445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:42 Download gff for
BO07358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10732-RB | 733..3159 | 17..2445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:33 Download gff for
BO07358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10732-RB | 746..3172 | 17..2445 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:33 Download gff for
BO07358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13444222..13444305 | 17..100 | 100 | -> | Plus |
3L | 13444368..13445898 | 101..1631 | 100 | -> | Plus |
3L | 13446012..13446280 | 1632..1900 | 100 | -> | Plus |
3L | 13446342..13446884 | 1901..2445 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:05:15 Download gff for
BO07358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13437322..13437405 | 17..100 | 100 | -> | Plus |
arm_3L | 13437468..13438998 | 101..1631 | 100 | -> | Plus |
arm_3L | 13439112..13439380 | 1632..1900 | 100 | -> | Plus |
arm_3L | 13439442..13439984 | 1901..2445 | 99 | | Plus |
BO07358.pep Sequence
Translation from 16 to 2461
> BO07358.pep
MVHEINPNSDQGEGVVNSTSLEDVALSEMSDNRAQSIQSLHSVLETPTPD
TTPSFDELQQRLEASNRNMQHLHDEQAKLLQIQNLAKTHLNEMERLRQQA
DSLPHNVNGGEAPKYESVQQVQDDMASLVGRMKNLTAFIHNQNELSTVLG
DDGPEILAEQEALQEKLESLRTQREDMRNLVDELNSINRAARETARVIKE
KEETPTPPPKPEEAAPAAPKERVVPVEYQRNVPIIRQEAANAAQRALHAQ
AMINQKTADIEALKAQMARLKGMLYTVSQIEESTPSMGSTLERRSEERTS
VERELPAEIAQRVFALNDVTSELRAEAASLQKERDRILALKAEIERRKQQ
AAAAVQMGDDALKRSSLTPTPTPMRQRMTEEEDPSEVDNSLQATPTKEQL
RDELRSQCERLRTEYEQKQRELEQRYVASNNTTSEADDEANDDTDSDKYF
ANVRTASSATLKRAPSANTVVEQRRGQQPNVPPQQAPPPPPPAPPSTLNE
DDLNVTLDTLSLGNDSIPSSSNRSQYMPPPMQPVPGMWASHNSGSSWHGQ
QPVYGQPSSSAGTEFKKLPAAQQGGSSNGSGSNASTDAVLLQQFMQTQQM
LINSVCQCNQALWHQQREIDNLNHQLHALQDRFNVVACQDHSFGLRSESV
PPPVGPGMGQMPNNLCLGSSRAQSEQLFNFGAHQSAFSNYQRSCHRSGAE
SHHHQQQQHQAQPFLNNAAPPPPPTHFNNETPLSPPTYRSSPGPIFMNHH
NNTIHQNNSNLRTQNQHANNLHSLPEGAAGGGAPGGGITLNNQVPPGNRA
NNYWDNFRRASFLDH
BO07358.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10732-PB | 809 | CG10732-PB | 1..809 | 1..809 | 4203 | 100 | Plus |
CG10732-PA | 1657 | CG10732-PA | 279..1089 | 1..811 | 4199 | 99.8 | Plus |
CG10732-PD | 1624 | CG10732-PD | 279..1056 | 1..811 | 3991 | 95.7 | Plus |
CG10732-PC | 1626 | CG10732-PC | 279..1058 | 1..811 | 3985 | 95.7 | Plus |