Clone Sequence Records
BO07362.3prime Sequence
835 bp (786 high quality bases) assembled on 2005-12-04
> BO07362.3prime
ATGGTCTAGAAAGCTTGCCATGTAGTAATCGGGATTCCAATCTGGTGGGC
GCATATGATCTGGATTGATTCCACCCTGTCCCGGCCTATTCGGGTTCAGG
GGATTGAACGGGTCGAAGCGGGGCACGGGTCCCGGGCCCATATTTGGGCG
TGATGGAAAGCTGAACAGGTTACCATGACCACCGCGACCCAGTGGATCGA
GATCCCCGCGTCCAACGTCCGGAAATCCAAAAGGGCGAGGCTCGAATGCA
CTTGGAATGAAGGATCCGCCACGCCTTGGCTCGCCGATGCGCAAGGGATC
TGGATCCGATCCAATGGGGCGTGGTGAGTTGGTCGTCTGCGTGGTAACTT
CGCGCGAGTTTCCCGTGAATACAGGGTCTAGAAGCTCCCTACGGTAGCGT
TCAACAATCTCTGAGGCACTCGGCATTATGGTGGTGATGCCTCCCTTGAC
CTCAGGTACCAGGGTCTCTGGTTCTACGCAGATGTTGGATACCTTCTTAG
TGTTGATGTCCAACAGGTTGATCAGCAGGGAGCCCTCGGTGATGTGGCCC
AGCAGCAAATACAGCATCTTATCGTGCACGTAGCGCAGCGAGTACTTGGT
ATCGTCATCATTCCAGCTGTCCGGCAGCAGCTCACTGCCCTCCTCCTCCG
GCAAGGTTTTATCATCGCCAACGCCAACGCATCGGAAGTTGTAATGCTTG
GTCAAAAGAAAATGGACGAGGGCAATCAAAAGGTCTGACTTCTTGGAGAC
ATCAGCCTTAACGGTCTTGTACAGCAGATCCCAACCGTAAAAGAAATCGC
CCGTCTTGGCAGTCGACCCACTTTCCATGTCGACT
BO07362.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8979-PA | 813 | CG8979-RA | 1..810 | 828..19 | 4050 | 100 | Minus |
CG8979-PC | 813 | CG8979-RC | 1..810 | 828..19 | 4050 | 100 | Minus |
CG8979-PB | 813 | CG8979-RB | 1..810 | 828..19 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PI31-RF | 1172 | CG8979-RF | 173..982 | 828..19 | 4050 | 100 | Minus |
PI31-RD | 1118 | CG8979-RD | 119..928 | 828..19 | 4050 | 100 | Minus |
PI31-RB | 1203 | CG8979-RB | 204..1013 | 828..19 | 4050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11967837..11968231 | 266..660 | 1975 | 100 | Plus |
2R | 25286936 | 2R | 11967533..11967780 | 19..266 | 1240 | 100 | Plus |
2R | 25286936 | 2R | 11968284..11968451 | 661..828 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:12:19 has no hits.
BO07362.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:28 Download gff for
BO07362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8979-PC | 1..813 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:54 Download gff for
BO07362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8979-PB | 1..813 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:35:54 Download gff for
BO07362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PI31-RB | 197..1018 | 11..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:37 Download gff for
BO07362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PI31-RB | 197..1018 | 11..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:37 Download gff for
BO07362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11968284..11968454 | 661..835 | 97 | | Plus |
2R | 11967528..11967779 | 11..265 | 98 | <- | Plus |
2R | 11967837..11968231 | 266..660 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:35:54 Download gff for
BO07362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7855033..7855284 | 11..265 | 98 | <- | Plus |
arm_2R | 7855342..7855736 | 266..660 | 100 | <- | Plus |
arm_2R | 7855789..7855959 | 661..835 | 97 | | Plus |
BO07362.5prime Sequence
842 bp (804 high quality bases) assembled on 2005-12-04
> BO07362.5prime
GAAGTTATCAGTCGACATGGAAAGTGGGTCGACTGCCAAGACGGGCGATT
TCTTTTACGGTTGGGATCTGCTGTACAAGACCGTTAAGGCTGATGTCTCC
AAGAAGTCAGACCTTTTGATTGCCCTCGTCCATTTTCTTTTGACCAAGCA
TTACAACTTCCGATGCGTTGGCGTTGGCGATGATAAAACCTTGCCGGAGG
AGGAGGGCAGTGAGCTGCTGCCGGACAGCTGGAATGATGACGATACCAAG
TACTCGCTGCGCTACGTGCACGATAAGATGCTGTATTTGCTGCTGGGCCA
CATCACCGAGGGCTCCCTGCTGATCAACCTGTTGGACATCAACACTAAGA
AGGTATCCAACATCTGCGTAGAACCAGAGACCCTGGTACCTGAGGTCAAG
GGAGGCATCACCACCATAATGCCGAGTGCCTCAGAGATTGTTGAACGCTA
CCGTAGGGAGCTTCTAGACCCTGTATTCACGGGAAACTCGCGCGAAGTTA
CCACGCAGACGACCAACTCACCACGCCCCATTGGATCGGATCCAGATCCC
TTGCGCATCGGCGAGCCAAGGCGTGGCGGATCCTTCATTCCAAGTGCATT
CGAGCCTCGCCCTTTTGGATTTCCGGACGTTGGACGCGGGGATCTCGATC
CACTGGGTCGCGGTGGTCATGGTAACCTGTTCAGCTTTCCATCACGCCCA
AATATGGGCCCGGGACCCGTGCCCCGCTTCGACCCGTTCAATCCCCTGAA
CCCGAATAGGCCGGGACAGGGTGGAATCAATCCAGATCATATGCGCCCAC
CAGATTGGAATCCCGATTACTACATGGGCAGCTTTCTAGACC
BO07362.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8979-PA | 813 | CG8979-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
CG8979-PC | 813 | CG8979-RC | 1..810 | 17..826 | 4050 | 100 | Plus |
CG8979-PB | 813 | CG8979-RB | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PI31-RF | 1172 | CG8979-RF | 173..982 | 17..826 | 4050 | 100 | Plus |
PI31-RD | 1118 | CG8979-RD | 119..928 | 17..826 | 4050 | 100 | Plus |
PI31-RB | 1203 | CG8979-RB | 204..1013 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11967837..11968231 | 579..185 | 1975 | 100 | Minus |
2R | 25286936 | 2R | 11967533..11967780 | 826..579 | 1240 | 100 | Minus |
2R | 25286936 | 2R | 11968284..11968451 | 184..17 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:37:48 has no hits.
BO07362.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:29 Download gff for
BO07362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8979-PC | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:57:56 Download gff for
BO07362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8979-PB | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:55:35 Download gff for
BO07362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PI31-RB | 204..1013 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:58:17 Download gff for
BO07362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PI31-RB | 204..1013 | 17..826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:58:17 Download gff for
BO07362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11967533..11967779 | 580..826 | 100 | <- | Minus |
2R | 11967837..11968231 | 185..579 | 100 | <- | Minus |
2R | 11968284..11968451 | 17..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:55:35 Download gff for
BO07362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7855038..7855284 | 580..826 | 100 | <- | Minus |
arm_2R | 7855342..7855736 | 185..579 | 100 | <- | Minus |
arm_2R | 7855789..7855956 | 17..184 | 100 | | Minus |
BO07362.complete Sequence
844 bp (844 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630760
> BO07362.complete
GAAGTTATCAGTCGACATGGAAAGTGGGTCGACTGCCAAGACGGGCGATT
TCTTTTACGGTTGGGATCTGCTGTACAAGACCGTTAAGGCTGATGTCTCC
AAGAAGTCAGACCTTTTGATTGCCCTCGTCCATTTTCTTTTGACCAAGCA
TTACAACTTCCGATGCGTTGGCGTTGGCGATGATAAAACCTTGCCGGAGG
AGGAGGGCAGTGAGCTGCTGCCGGACAGCTGGAATGATGACGATACCAAG
TACTCGCTGCGCTACGTGCACGATAAGATGCTGTATTTGCTGCTGGGCCA
CATCACCGAGGGCTCCCTGCTGATCAACCTGTTGGACATCAACACTAAGA
AGGTATCCAACATCTGCGTAGAACCAGAGACCCTGGTACCTGAGGTCAAG
GGAGGCATCACCACCATAATGCCGAGTGCCTCAGAGATTGTTGAACGCTA
CCGTAGGGAGCTTCTAGACCCTGTATTCACGGGAAACTCGCGCGAAGTTA
CCACGCAGACGACCAACTCACCACGCCCCATTGGATCGGATCCAGATCCC
TTGCGCATCGGCGAGCCAAGGCGTGGCGGATCCTTCATTCCAAGTGCATT
CGAGCCTCGCCCTTTTGGATTTCCGGACGTTGGACGCGGGGATCTCGATC
CACTGGGTCGCGGTGGTCATGGTAACCTGTTCAGCTTTCCATCACGCCCA
AATATGGGCCCGGGACCCGTGCCCCGCTTCGACCCGTTCAATCCCCTGAA
CCCGAATAGGCCGGGACAGGGTGGAATCAATCCAGATCATATGCGCCCAC
CAGATTGGAATCCCGATTACTACATGGCAAGCTTTCTAGACCAT
BO07362.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PI31-RF | 813 | CG8979-PF | 1..810 | 17..826 | 4050 | 100 | Plus |
PI31-RD | 813 | CG8979-PD | 1..810 | 17..826 | 4050 | 100 | Plus |
PI31-RB | 813 | CG8979-PB | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PI31-RF | 1172 | CG8979-RF | 173..982 | 17..826 | 4050 | 100 | Plus |
PI31-RD | 1118 | CG8979-RD | 119..928 | 17..826 | 4050 | 100 | Plus |
PI31-RB | 1203 | CG8979-RB | 204..1013 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11967837..11968231 | 579..185 | 1975 | 100 | Minus |
2R | 25286936 | 2R | 11967533..11967780 | 826..579 | 1240 | 100 | Minus |
2R | 25286936 | 2R | 11968284..11968451 | 184..17 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:32:05 has no hits.
BO07362.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:25 Download gff for
BO07362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8979-RB | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:47 Download gff for
BO07362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8979-RB | 114..928 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:52 Download gff for
BO07362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PI31-RB | 204..1013 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:25 Download gff for
BO07362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8979-RB | 114..928 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:42 Download gff for
BO07362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PI31-RB | 204..1013 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:42 Download gff for
BO07362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11967531..11967779 | 580..828 | 99 | <- | Minus |
2R | 11967837..11968231 | 185..579 | 100 | <- | Minus |
2R | 11968284..11968451 | 17..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:52 Download gff for
BO07362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7855036..7855284 | 580..828 | 99 | <- | Minus |
arm_2R | 7855342..7855736 | 185..579 | 100 | <- | Minus |
arm_2R | 7855789..7855956 | 17..184 | 100 | | Minus |
BO07362.pep Sequence
Translation from 16 to 844
> BO07362.pep
MESGSTAKTGDFFYGWDLLYKTVKADVSKKSDLLIALVHFLLTKHYNFRC
VGVGDDKTLPEEEGSELLPDSWNDDDTKYSLRYVHDKMLYLLLGHITEGS
LLINLLDINTKKVSNICVEPETLVPEVKGGITTIMPSASEIVERYRRELL
DPVFTGNSREVTTQTTNSPRPIGSDPDPLRIGEPRRGGSFIPSAFEPRPF
GFPDVGRGDLDPLGRGGHGNLFSFPSRPNMGPGPVPRFDPFNPLNPNRPG
QGGINPDHMRPPDWNPDYYMASFLDH
BO07362.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PI31-PF | 270 | CG8979-PF | 1..270 | 1..270 | 1469 | 100 | Plus |
PI31-PD | 270 | CG8979-PD | 1..270 | 1..270 | 1469 | 100 | Plus |
PI31-PB | 270 | CG8979-PB | 1..270 | 1..270 | 1469 | 100 | Plus |
PI31-PC | 270 | CG8979-PC | 1..270 | 1..270 | 1469 | 100 | Plus |
PI31-PA | 270 | CG8979-PA | 1..270 | 1..270 | 1469 | 100 | Plus |