Clone Sequence Records
BO07365.3prime Sequence
961 bp (818 high quality bases) assembled on 2005-12-04
> BO07365.3prime
ATGGTCTAGAAAGCTTGCGGTCTTCTCCTCCTTTTCCTTGTTGTAGCGCT
CCAGTTCTTTGAGGAACTGCGCCTTGGGTTTCATTACATTTGGCCGTTCT
CCGCGGCAGTTGGGGCAGAACCACTTGCCTTTTGGTTTTAGTACCAGGGA
GACGCACGAAAAATGGAACCACTCGATGGGGCACAGGTCATTGTCGCACA
GGATCATCTCGCCAAAGGAGATCTGATTGCAGACACAGTAGGTCGGCTCG
TCCGGATCAATGGTCTCCGGCGGCGGCGTCTCCTCTCGCGTACTGGCATT
GGCATTTGAAGCCCCAGAACCGCGTACCTTGCGCTTTTTCTTCTTGCCGG
AATTATTGCCACCAACTACGCCGGCTCCGCTGGCACCACCACCTCCGGCT
GCTCCACTGCTCGTGGCTGCAGAGCCGCTAGCCAAACTGCCAGAAGCCGA
CTGCAGACTGGCCTTTCGTCCCTGTCCCGCTCCACTGGCACCGCCCAACG
AGGATTTGCGCTCGCCACTGCCACCACCACTGCCACTGGCTTCATTTGCC
GAGTTGGACTCGTTGCCGCCCATCTCCAGAGAGCTTCCGTTGTTAACAAC
ACTCTCGTTTCGCCTCCTCGACCGCTTGCTACCTGTGCGCTGCAGTTCTC
CGCCTCCTCCGCCGCTGGCATTGCCATTGGAGCCGCTGTTGCCACCATTA
CTGACATGGCTCGAGCGCTCCGAGTTGGGCGTTGAGCCGCCACCGTTGCC
GGAGGTCATGGCATTAGAACCAGGCACAACACCACCTGCATAGCCGCCCA
AGGCGTACAGATCTTTGGCCGAAAGCANGCCGTTTCCATTTAGGCCACCG
TTGCCAGTGCCCGCTTGGTTGCCCTGCTCCCTCATCGGGCTCTGCAGGCG
TTGCAGCTTCGAAGGCGTGCCATCGTCCAGGAGCGCATACCGATCGCGGT
CCTCCTTCAGG
BO07365.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7379-PA | 1302 | CG7379-RA | 357..1299 | 961..19 | 4696 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7379-RA | 1787 | CG7379-RA | 552..1494 | 961..19 | 4704 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17796934..17797672 | 223..961 | 3684 | 99.9 | Plus |
3R | 32079331 | 3R | 17796669..17796875 | 19..225 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 14:58:13 has no hits.
BO07365.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:32 Download gff for
BO07365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-PA | 357..1302 | 18..961 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:00 Download gff for
BO07365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-PA | 357..1302 | 18..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:06:03 Download gff for
BO07365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 552..1494 | 19..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:39 Download gff for
BO07365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 552..1494 | 19..961 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:39 Download gff for
BO07365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17796669..17796872 | 19..222 | 100 | <- | Plus |
3R | 17796934..17797672 | 223..961 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:06:03 Download gff for
BO07365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13622391..13622594 | 19..222 | 100 | <- | Plus |
arm_3R | 13622656..13623394 | 223..961 | 99 | | Plus |
BO07365.5prime Sequence
936 bp (860 high quality bases) assembled on 2005-12-04
> BO07365.5prime
GAAGTTATCAGTCGACATGATAAACCCCATTGCATCCGAGTCGGAGGCCA
TCAATTCGGCCACCTATGTGGACAACTATATCGATTCGGTGGAAAATCTG
CCGGACGACGTGCAGCGCCAGTTGTCACGCATCCGCGACATAGACGTCCA
GTACAGAGGCCTCATTCGCGACGTAGACCACTACTACGACCTGTATCTGT
CCCTGCAGAACTCCGCGGATGCCGGGCGACGGTCTCGAAGCATCTCCAGG
ATGCACCAGAGTCTCATTCAGGCGCAGGAACTGGGCGACGAAAAAATGCA
GATCGTCAATCATATGCAGGAGATAATCGACGGCAAGCTGCGCCAGCTGG
ACACCGACCAGCAGAACCTGGACCTGAAGGAGGACCGCGATCGGTATGCG
CTCCTGGACGATGGCACGCCTTCGAAGCTGCAACGCCTGCAGAGCCCGAT
GAGGGAGCAGGGCAACCAAGCGGGCACTGGCAACGGTGGCCTAAATGGAA
ACGGCCTGCTTTCGGCCAAAGATCTGTACGCCTTGGGCGGCTATGCAGGT
GGTGTTGTGCCTGGTTCTAATGCCATGACCTCCGGCAACGGTGGCGGCTC
AACGCCCAACTCGGAGCGCTCGAGCCATGTCAGTAATGGTGGCAACAGCG
GCTCCAATGGCAATGCCAGCGGCGGAGGAGGCGGAGAACTGCAGCGCACA
GGTAGCAAGCGGTCGAGGAGGCGAAACGAGAGTGTTGTTAACAACGGAAG
CTCTCTGGAGATGGGCGGCAACGAGTCCAACTCGGCAAATGAAGCCAGTG
GCAGTGGTGGTGGCAGTGGCGAGCGCAAATCCTCGTTGGGCGGTGCCAGT
GGAGCGGGACAGGGACGAAAAGCCAGTCTGCAGTCGGCTTCTGGCAGTTT
GGCTAGCGGCTCTGCAGCCACGAGCAGTGGAGCAGC
BO07365.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7379-PA | 1302 | CG7379-RA | 1..920 | 17..936 | 4575 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7379-RA | 1787 | CG7379-RA | 196..1115 | 17..936 | 4585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17797109..17797888 | 936..157 | 3885 | 99.9 | Minus |
3R | 32079331 | 3R | 17797967..17798109 | 159..17 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:23:53 has no hits.
BO07365.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:34 Download gff for
BO07365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:01 Download gff for
BO07365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:06 Download gff for
BO07365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 188..1115 | 9..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:49:08 Download gff for
BO07365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 188..1115 | 9..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:49:08 Download gff for
BO07365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17797109..17797886 | 159..936 | 99 | <- | Minus |
3R | 17797968..17798113 | 9..158 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:06 Download gff for
BO07365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13622831..13623608 | 159..936 | 99 | <- | Minus |
arm_3R | 13623690..13623835 | 9..158 | 97 | | Minus |
BO07365.complete Sequence
1333 bp (1333 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630762
> BO07365.complete
GAAGTTATCAGTCGACATGATAAACCCCATTGCATCCGAGTCGGAGGCCA
TCAATTCGGCCACCTATGTGGACAACTATATCGATTCGGTGGAAAATCTG
CCGGACGACGTGCAGCGCCAGTTGTCACGCATCCGCGACATAGACGTCCA
GTACAGAGGCCTCATTCGCGACGTAGACCACTACTACGACCTGTATCTGT
CCCTGCAGAACTCCGCGGATGCCGGGCGACGGTCTCGAAGCATCTCCAGG
ATGCACCAGAGTCTCATTCAGGCGCAGGAACTGGGCGACGAAAAAATGCA
GATCGTCAATCATATGCAGGAGATAATCGACGGCAAGCTGCGCCAGCTGG
ACACCGACCAGCAGAACCTGGACCTGAAGGAGGACCGCGATCGGTATGCG
CTCCTGGACGATGGCACGCCTTCGAAGCTGCAACGCCTGCAGAGCCCGAT
GAGGGAGCAGGGCAACCAAGCGGGCACTGGCAACGGTGGCCTAAATGGAA
ACGGCCTGCTTTCGGCCAAAGATCTGTACGCCTTGGGCGGCTATGCAGGT
GGTGTTGTGCCTGGTTCTAATGCCATGACCTCCGGCAACGGTGGCGGCTC
AACGCCCAACTCGGAGCGCTCGAGCCATGTCAGTAATGGTGGCAACAGCG
GCTCCAATGGCAATGCCAGCGGCGGAGGAGGCGGAGAACTGCAGCGCACA
GGTAGCAAGCGGTCGAGGAGGCGAAACGAGAGTGTTGTTAACAACGGAAG
CTCTCTGGAGATGGGCGGCAACGAGTCCAACTCGGCAAATGAAGCCAGTG
GCAGTGGTGGTGGCAGTGGCGAGCGCAAATCCTCGTTGGGCGGTGCCAGT
GGAGCGGGACAGGGACGAAAGGCCAGTCTGCAGTCGGCTTCTGGCAGTTT
GGCTAGCGGCTCTGCAGCCACGAGCAGTGGAGCAGCCGGAGGTGGTGGTG
CCAGCGGAGCCGGCGTAGTTGGTGGCAATAATTCCGGCAAGAAGAAAAAG
CGCAAGGTACGCGGTTCTGGGGCTTCAAATGCCAATGCCAGTACGCGAGA
GGAGACGCCGCCGCCGGAGACCATTGATCCGGACGAGCCGACCTACTGTG
TCTGCAATCAGATCTCCTTTGGCGAGATGATCCTGTGCGACAATGACCTG
TGCCCCATCGAGTGGTTCCATTTTTCGTGCGTCTCCCTGGTACTAAAACC
AAAAGGCAAGTGGTTCTGCCCCAACTGCCGCGGAGAACGGCCAAATGTAA
TGAAACCCAAGGCGCAGTTCCTCAAAGAACTGGAGCGCTACAACAAGGAA
AAGGAGGAGAAGACCGCAAGCTTTCTAGACCAT
BO07365.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7379-RA | 1302 | CG7379-PA | 1..1299 | 17..1315 | 6495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7379-RA | 1787 | CG7379-RA | 196..1494 | 17..1315 | 6495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17796934..17797888 | 1111..157 | 4775 | 100 | Minus |
3R | 32079331 | 3R | 17796669..17796875 | 1315..1109 | 1035 | 100 | Minus |
3R | 32079331 | 3R | 17797967..17798109 | 159..17 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:46:48 has no hits.
BO07365.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:56 Download gff for
BO07365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 1..1302 | 17..1316 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:57 Download gff for
BO07365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 209..1515 | 9..1315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:56 Download gff for
BO07365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 196..1494 | 17..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:56 Download gff for
BO07365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 209..1515 | 9..1315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:06 Download gff for
BO07365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7379-RA | 196..1494 | 17..1317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:06 Download gff for
BO07365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17796667..17796872 | 1112..1317 | 99 | <- | Minus |
3R | 17796934..17797886 | 159..1111 | 100 | <- | Minus |
3R | 17797968..17798109 | 17..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:56 Download gff for
BO07365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13622389..13622594 | 1112..1317 | 99 | <- | Minus |
arm_3R | 13622656..13623608 | 159..1111 | 100 | <- | Minus |
arm_3R | 13623690..13623831 | 17..158 | 100 | | Minus |
BO07365.pep Sequence
Translation from 16 to 1333
> BO07365.pep
MINPIASESEAINSATYVDNYIDSVENLPDDVQRQLSRIRDIDVQYRGLI
RDVDHYYDLYLSLQNSADAGRRSRSISRMHQSLIQAQELGDEKMQIVNHM
QEIIDGKLRQLDTDQQNLDLKEDRDRYALLDDGTPSKLQRLQSPMREQGN
QAGTGNGGLNGNGLLSAKDLYALGGYAGGVVPGSNAMTSGNGGGSTPNSE
RSSHVSNGGNSGSNGNASGGGGGELQRTGSKRSRRRNESVVNNGSSLEMG
GNESNSANEASGSGGGSGERKSSLGGASGAGQGRKASLQSASGSLASGSA
ATSSGAAGGGGASGAGVVGGNNSGKKKKRKVRGSGASNANASTREETPPP
ETIDPDEPTYCVCNQISFGEMILCDNDLCPIEWFHFSCVSLVLKPKGKWF
CPNCRGERPNVMKPKAQFLKELERYNKEKEEKTASFLDH
BO07365.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7379-PA | 433 | CG7379-PA | 1..433 | 1..433 | 2248 | 100 | Plus |
CG9293-PA | 285 | CG9293-PA | 112..282 | 223..408 | 294 | 36.3 | Plus |
Ing3-PA | 686 | CG6632-PA | 430..686 | 177..410 | 294 | 31 | Plus |
CG9293-PB | 271 | CG9293-PB | 112..268 | 223..408 | 284 | 34.2 | Plus |
Mur89F-PC | 2158 | CG4090-PC | 508..751 | 105..360 | 185 | 26.6 | Plus |
Ing3-PA | 686 | CG6632-PA | 3..358 | 17..342 | 157 | 22.2 | Plus |