Clone BO07367 Report

Search the DGRC for BO07367

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:73
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG4847-RA
Protein status:BO07367.pep: validated not full length
Sequenced Size:1204

Clone Sequence Records

BO07367.3prime Sequence

908 bp (821 high quality bases) assembled on 2005-12-04

> BO07367.3prime
ATGGTCTAGAAAGCTTGCAACCACGGGATAGGAGCACTCCTCAGCAATGA
AGCAGTAGTTTTTGCCGCGAGGCAGGCGGAAGTAGCCCTTTTCGCCCCAG
GTGTCGTCCCAGGAGTTCTTGACGATCCAGTAATCCTGTCCTTTCTCCGA
TCCGTAACCGACGACCAGAATGGAGTGGTTCGGCTCGCCCTTGTTGCACT
CATCGTCGTTATAGATGCCACCGGCGTAGTTCTTAAGAGTCTCCAAACCA
TTCACCGAACAGGCAACTGGTCCCAGAGTGGCCACCACCTTCTTCAGCTG
CTCCTCGTCCTTGGGCGGAATAGCGGCGAATCCCTGGAGGGTGGCTCCGG
ACTTGCTGCCATCGTACTTGCACGTGCCCTTGTTGTCAATGTAGGGATAG
GCCCCCTCCTGGGACACACCCTTTTGCACCTCATCGATGAAACAGAATGC
GGCCTCCTGGAAGCCACCATCGCAGCCATTCAGGCCAAAGTCCTCCACCG
GACCACAGTCGACCAGATTCTGCTCAGAGAGATTGGGCAGGCTGCCGGTC
TTGCGGAAGGTGTGTCCCTCAATGGCACCAGTGGTGGCAAAGGCCCAACA
GGAGCCACAGGTACCCTGGAATTTGACTGGTGTGACACCGCCATGCTCGC
GCCAATCGAAGGCATCCGGGATGGGCTTCGCAGGCAGGTTGACCAACTTC
AAACTGGCAGCAGCTCGAGCCTTAGCCTCCGGACTTCTCTTCAGACCGGT
CAATTGACTAAGGAACTCAGAGTGGGTCAGATCGGCGAAGGCGTTCACGG
CCTGCTTGAAGGTGTGCACTCCTTGGGCAAAGGCTGCGTTTCCGGCTTCC
ACAGGTTCTTGGTGGAAGCGAAGGCACCTTCATGAAGAGCGCGATCAGCG
GCGGAGAG

BO07367.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-PA 1173 CG4847-RA 337..1170 852..19 4170 100 Minus
CG4847-PC 1173 CG4847-RC 337..1170 852..19 4170 100 Minus
CG4847-PD 1263 CG4847-RD 427..1260 852..19 4170 100 Minus
CG4847-PB 1173 CG4847-RB 337..1170 852..19 4170 100 Minus
CG4847-PE 1173 CG4847-RE 337..1170 852..19 4170 100 Minus
CG4847-PA 1173 CG4847-RA 280..336 908..852 285 100 Minus
CG4847-PC 1173 CG4847-RC 280..336 908..852 285 100 Minus
CG4847-PD 1263 CG4847-RD 370..426 908..852 285 100 Minus
CG4847-PB 1173 CG4847-RB 280..336 908..852 285 100 Minus
CG4847-PE 1173 CG4847-RE 280..336 908..852 285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-RE 1308 CG4847-RE 315..1205 908..19 4430 99.9 Minus
CG4847-RD 1501 CG4847-RD 508..1398 908..19 4430 99.9 Minus
CG4847-RC 1313 CG4847-RC 320..1210 908..19 4430 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17513050..17513752 721..19 3515 100 Minus
2R 25286936 2R 17512797..17512985 908..721 895 99.5 Minus
Blast to na_te.dros performed on 2015-02-10 15:00:18 has no hits.

BO07367.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:37 Download gff for BO07367.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-PD 370..1263 15..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:05 Download gff for BO07367.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-PC 280..1173 15..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:06:07 Download gff for BO07367.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-RC 320..1215 13..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:25 Download gff for BO07367.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-RC 320..1215 13..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:25 Download gff for BO07367.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17512797..17512984 722..908 99 -> Minus
2R 17513050..17513757 13..721 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:06:07 Download gff for BO07367.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13400302..13400489 722..908 99 -> Minus
arm_2R 13400555..13401262 13..721 99   Minus

BO07367.5prime Sequence

817 bp (776 high quality bases) assembled on 2005-12-04

> BO07367.5prime
GAAGTTATCAGTCGACATGAAGCTTCTGTTGGTTCTTCCACTTCTGGTGG
CTGTGGTCTCTGGCCAGGGATTCGGAGGCGGTGGATTTGGAGGCGGATTT
GGAGGTGGACTCGGAGGCGGATTTGGAGGTGGACTCGGAGGCTTGGGCAA
CAATCGAGTGGGTGGAGCTTTACAAAATGTGGCCGGCGCCGTTCAGAATG
CCGTGGGCAACATTGCCAAGGCTGTGCCCAAGGTGCCGCTGCTCTCAAAC
GTCCAGGACTTTGGTGACTTCTTGAGCCAATCTGGAAAGACCTATCTCTC
CGCCGCTGATCGCGCTCTTCATGAAGGTGCCTTCGCTTCCACCAAGAACC
TGGTGGAAGCCGGAAACGCAGCCTTTGCCCAAGGAGTGCACACCTTCAAG
CAGGCCGTGAACGCCTTCGCCGATCTGACCCACTCTGAGTTCCTTAGTCA
ATTGACCGGTCTGAAGAGAAGTCCGGAGGCTAAGGCTCGAGCTGCTGCCA
GTTTGAAGTTGGTCAACCTGCCTGCGAAGCCCATCCCGGATGCCTTCGAT
TGGCGCGAGCATGGCGGTGTCACACCAGTCAAATTCCAGGGTACCTGTGG
CTCCTGTTGGGCCTTTGCCACCACTGGTGCCATTGAGGGACACACCTTCC
GCAAGACCGGCAGCCTGCCCAATCTCTCTGAGCAGAATCTGGTCGACTGT
GGTCCGGTGGAGGACTTTGGCCTGAATGGCTGCGATGGTGGCTTCCAGGA
GGCCGCATTCTGTTTCATCGATGAGGTGCAAAAGGGTGTGTCCCAGGAGG
GGGCCTATCCCTACATT

BO07367.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-PA 1173 CG4847-RA 1..801 17..817 4005 100 Plus
CG4847-PC 1173 CG4847-RC 1..801 17..817 4005 100 Plus
CG4847-PD 1263 CG4847-RD 91..891 17..817 4005 100 Plus
CG4847-PB 1173 CG4847-RB 1..801 17..817 4005 100 Plus
CG4847-PE 1173 CG4847-RE 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-RE 1308 CG4847-RE 36..836 17..817 4005 100 Plus
CG4847-RD 1501 CG4847-RD 229..1029 17..817 4005 100 Plus
CG4847-RC 1313 CG4847-RC 41..841 17..817 4005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17513050..17513383 484..817 1670 100 Plus
2R 25286936 2R 17512458..17512715 17..274 1290 100 Plus
2R 25286936 2R 17512775..17512985 274..484 1055 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:52:15 has no hits.

BO07367.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:38 Download gff for BO07367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:07 Download gff for BO07367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-PE 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:31 Download gff for BO07367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-RC 35..841 7..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:32 Download gff for BO07367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4847-RC 35..841 7..817 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:32 Download gff for BO07367.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17512452..17512715 7..274 98 -> Plus
2R 17512776..17512984 275..483 100 -> Plus
2R 17513050..17513383 484..817 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:31 Download gff for BO07367.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13399957..13400220 7..274 98 -> Plus
arm_2R 13400281..13400489 275..483 100 -> Plus
arm_2R 13400555..13400888 484..817 100   Plus

BO07367.complete Sequence

1204 bp assembled on 2007-10-17

GenBank Submission: FJ630763

> BO07367.complete
GAAGTTATCAGTCGACATGAAGCTTCTGTTGGTTCTTCCACTTCTGGTGG
CTGTGGTCTCTGGCCAGGGATTCGGAGGCGGTGGATTTGGAGGCGGATTT
GGAGGTGGACTCGGAGGCGGATTTGGAGGTGGACTCGGAGGCTTGGGCAA
CAATCGAGTGGGTGGAGCTTTACAAAATGTGGCCGGCGCCGTTCAGAATG
CCGTGGGCAACATTGCCAAGGCTGTGCCCAAGGTGCCGCTGCTCTCAAAC
GTCCAGGACTTTGGTGACTTCTTGAGCCAATCTGGAAAGACCTATCTCTC
CGCCGCTGATCGCGCTCTTCATGAAGGTGCCTTCGCTTCCACCAAGAACC
TGGTGGAAGCCGGAAACGCAGCCTTTGCCCAAGGAGTGCACACCTTCAAG
CAGGCCGTGAACGCCTTCGCCGATCTGACCCACTCTGAGTTCCTTAGTCA
ATTGACCGGTCTGAAGAGAAGTCCGGAGGCTAAGGCTCGAGCTGCTGCCA
GTTTGAAGTTGGTCAACCTGCCTGCGAAGCCCATCCCGGATGCCTTCGAT
TGGCGCGAGCATGGCGGTGTCACACCAGTCAAATTCCAGGGTACCTGTGG
CTCCTGTTGGGCCTTTGCCACCACTGGTGCCATTGAGGGACACACCTTCC
GCAAGACCGGCAGCCTGCCCAATCTCTCTGAGCAGAATCTGGTCGACTGT
GGTCCGGTGGAGGACTTTGGCCTGAATGGCTGCGATGGTGGCTTCCAGGA
GGCCGCATTCTGTTTCATCGATGAGGTGCAAAAGGGTGTGTCCCAGGAGG
GGGCCTATCCCTACATTGACAACAAGGGCACGTGCAAGTACGATGGCAGC
AAGTCCGGAGCCACCCTCCAGGGATTCGCCGCTATTCCGCCCAAGGACGA
GGAGCAGCTGAAGAAGGTGGTGGCCACTCTGGGACCAGTTGCCTGTTCGG
TGAATGGTTTGGAGACTCTTAAGAACTACGCCGGTGGCATCTATAACGAC
GATGAGTGCAACAAGGGCGAGCCGAACCACTCCATTCTGGTCGTCGGTTA
CGGATCGGAGAAAGGACAGGATTACTGGATCGTCAAGAACTCCTGGGACG
ACACCTGGGGCGAAAAGGGCTACTTCCGCCTGCCTCGCGGCAAAAACTAC
TGCTTCATTGCTGAGGAGTGCTCCTATCCCGTGGTTGCAAGCTTTCTAGA
CCAT

BO07367.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-RE 1173 CG4847-PE 1..1170 17..1186 5850 100 Plus
CG4847-RD 1263 CG4847-PD 91..1260 17..1186 5850 100 Plus
CG4847-RC 1173 CG4847-PC 1..1170 17..1186 5850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-RE 1308 CG4847-RE 36..1205 17..1186 5850 100 Plus
CG4847-RD 1501 CG4847-RD 229..1398 17..1186 5850 100 Plus
CG4847-RC 1313 CG4847-RC 41..1210 17..1186 5850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17513050..17513752 484..1186 3515 100 Plus
2R 25286936 2R 17512458..17512715 17..274 1290 100 Plus
2R 25286936 2R 17512775..17512985 274..484 1055 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:52:23 has no hits.

BO07367.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:15 Download gff for BO07367.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RD 85..1263 7..1190 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:28 Download gff for BO07367.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RD 218..1398 7..1192 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:52 Download gff for BO07367.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RC 41..1210 17..1188 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:15 Download gff for BO07367.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RD 224..1393 17..1188 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:23 Download gff for BO07367.complete
Subject Subject Range Query Range Percent Splice Strand
CG4847-RC 41..1210 17..1188 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:23 Download gff for BO07367.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17512458..17512715 17..274 100 -> Plus
2R 17512776..17512984 275..483 100 -> Plus
2R 17513050..17513752 484..1188 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:52 Download gff for BO07367.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13399963..13400220 17..274 100 -> Plus
arm_2R 13400281..13400489 275..483 100 -> Plus
arm_2R 13400555..13401257 484..1188 99   Plus

BO07367.pep Sequence

Translation from 16 to 1204

> BO07367.pep
MKLLLVLPLLVAVVSGQGFGGGGFGGGFGGGLGGGFGGGLGGLGNNRVGG
ALQNVAGAVQNAVGNIAKAVPKVPLLSNVQDFGDFLSQSGKTYLSAADRA
LHEGAFASTKNLVEAGNAAFAQGVHTFKQAVNAFADLTHSEFLSQLTGLK
RSPEAKARAAASLKLVNLPAKPIPDAFDWREHGGVTPVKFQGTCGSCWAF
ATTGAIEGHTFRKTGSLPNLSEQNLVDCGPVEDFGLNGCDGGFQEAAFCF
IDEVQKGVSQEGAYPYIDNKGTCKYDGSKSGATLQGFAAIPPKDEEQLKK
VVATLGPVACSVNGLETLKNYAGGIYNDDECNKGEPNHSILVVGYGSEKG
QDYWIVKNSWDDTWGEKGYFRLPRGKNYCFIAEECSYPVVASFLDH

BO07367.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4847-PE 390 CG4847-PE 1..390 1..390 2081 100 Plus
CG4847-PC 390 CG4847-PC 1..390 1..390 2081 100 Plus
CG4847-PA 390 CG4847-PA 1..390 1..390 2081 100 Plus
CG4847-PD 420 CG4847-PD 31..420 1..390 2081 100 Plus
CG6347-PA 352 CG6347-PA 30..352 74..390 733 46.2 Plus