Clone Sequence Records
BO07368.3prime Sequence
494 bp (493 high quality bases) assembled on 2005-12-04
> BO07368.3prime
ATGGTCTAGAAAGCTTGCGTTGGCCACCTTCTTCTGCTGCTTGACCTTGT
AGTCAGCCAGGGCCGCCTTGATGGCATCCTCGGCCAGCATGGAGCAATGC
AGCTTGACGGGCGGCAGACGCAGCTCCTTGGCGATGTCCGTATTCTTCAG
CTTTCCGGCCTCGTCGATGGACTTGCCCTTCACCCACTCGGTGGCCAGGG
AGCTGCTGGCAATGGCCGATCCACAGCCGAAGGTCTTGAACTTGGCGTCC
ACTATCTTGCCGTTCTCGTCCACCTTGATCTGCAGTTTCATCACATCGCC
GCAGGCTGGTGCTCCGACCAAGCCGGTGCCCACAGTGACATCCTTCTTGT
CCAAAGATCCCACGTTGCGCGGGTTTTCGTAGTGCTCAACGACATTTTCA
TGATACAATGCCACCGGGACACTTTGTACGCGCTTCAGCTGCGATCGCAG
CAACCGGGAGGAGTTTCGCACCAGGGACATGTCGACTGATAACT
BO07368.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9836-PA | 465 | CG9836-RA | 1..462 | 480..19 | 2310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:24:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9836-RA | 955 | CG9836-RA | 107..568 | 480..19 | 2310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8823427..8823801 | 19..393 | 1875 | 100 | Plus |
3R | 32079331 | 3R | 8823983..8824071 | 392..480 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:24:22 has no hits.
BO07368.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:39 Download gff for
BO07368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-PA | 1..465 | 16..480 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:08 Download gff for
BO07368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-PA | 1..465 | 16..480 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:09 Download gff for
BO07368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 107..568 | 19..480 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:49:12 Download gff for
BO07368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 107..568 | 19..480 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:49:12 Download gff for
BO07368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8823427..8823801 | 19..393 | 100 | <- | Plus |
3R | 8823985..8824071 | 394..480 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:09 Download gff for
BO07368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4649149..4649523 | 19..393 | 100 | <- | Plus |
arm_3R | 4649707..4649793 | 394..480 | 100 | | Plus |
BO07368.5prime Sequence
494 bp (493 high quality bases) assembled on 2005-12-04
> BO07368.5prime
GAAGTTATCAGTCGACATGTCCCTGGTGCGAAACTCCTCCCGGTTGCTGC
GATCGCAGCTGAAGCGCGTACAAAGTGTCCCGGTGGCATTGTATCATGAA
AATGTCGTTGAGCACTACGAAAACCCGCGCAACGTGGGATCTTTGGACAA
GAAGGATGTCACTGTGGGCACCGGCTTGGTCGGAGCACCAGCCTGCGGCG
ATGTGATGAAACTGCAGATCAAGGTGGACGAGAACGGCAAGATAGTGGAC
GCCAAGTTCAAGACCTTCGGCTGTGGATCGGCCATTGCCAGCAGCTCCCT
GGCCACCGAGTGGGTGAAGGGCAAGTCCATCGACGAGGCCGGAAAGCTGA
AGAATACGGACATCGCCAAGGAGCTGCGTCTGCCGCCCGTCAAGCTGCAT
TGCTCCATGCTGGCCGAGGATGCCATCAAGGCGGCCCTGGCTGACTACAA
GGTCAAGCAGCAGAAGAAGGTGGCCAACGCAAGCTTTCTAGACC
BO07368.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9836-PA | 465 | CG9836-RA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9836-RA | 955 | CG9836-RA | 107..568 | 17..478 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8823427..8823801 | 478..104 | 1875 | 100 | Minus |
3R | 32079331 | 3R | 8823983..8824071 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:58:40 has no hits.
BO07368.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:40 Download gff for
BO07368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-PA | 1..465 | 17..481 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:09 Download gff for
BO07368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-PA | 1..465 | 17..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:38 Download gff for
BO07368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 107..568 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:46 Download gff for
BO07368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 107..568 | 17..478 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:46 Download gff for
BO07368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8823427..8823801 | 104..478 | 100 | <- | Minus |
3R | 8823985..8824071 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:38 Download gff for
BO07368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4649149..4649523 | 104..478 | 100 | <- | Minus |
arm_3R | 4649707..4649793 | 17..103 | 100 | | Minus |
BO07368.complete Sequence
496 bp (496 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630764
> BO07368.complete
GAAGTTATCAGTCGACATGTCCCTGGTGCGAAACTCCTCCCGGTTGCTGC
GATCGCAGCTGAAGCGCGTACAAAGTGTCCCGGTGGCATTGTATCATGAA
AATGTCGTTGAGCACTACGAAAACCCGCGCAACGTGGGATCTTTGGACAA
GAAGGATGTCACTGTGGGCACCGGCTTGGTCGGAGCACCAGCCTGCGGCG
ATGTGATGAAACTGCAGATCAAGGTGGACGAGAACGGCAAGATAGTGGAC
GCCAAGTTCAAGACCTTCGGCTGTGGATCGGCCATTGCCAGCAGCTCCCT
GGCCACCGAGTGGGTGAAGGGCAAGTCCATCGACGAGGCCGGAAAGCTGA
AGAATACGGACATCGCCAAGGAGCTGCGTCTGCCGCCCGTCAAGCTGCAT
TGCTCCATGCTGGCCGAGGATGCCATCAAGGCGGCCCTGGCTGACTACAA
GGTCAAGCAGCAGAAGAAGGTGGCCAACGCAAGCTTTCTAGACCAT
BO07368.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9836-RA | 465 | CG9836-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9836-RA | 955 | CG9836-RA | 107..568 | 17..478 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8823427..8823801 | 478..104 | 1875 | 100 | Minus |
3R | 32079331 | 3R | 8823983..8824071 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:38:36 has no hits.
BO07368.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:30 Download gff for
BO07368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 1..465 | 17..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:51 Download gff for
BO07368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 103..564 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:25 Download gff for
BO07368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 107..568 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:31 Download gff for
BO07368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 103..564 | 17..478 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:32 Download gff for
BO07368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9836-RA | 107..568 | 17..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:32 Download gff for
BO07368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8823424..8823801 | 104..480 | 99 | <- | Minus |
3R | 8823985..8824071 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:25 Download gff for
BO07368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4649146..4649523 | 104..480 | 99 | <- | Minus |
arm_3R | 4649707..4649793 | 17..103 | 100 | | Minus |
BO07368.pep Sequence
Translation from 16 to 496
> BO07368.pep
MSLVRNSSRLLRSQLKRVQSVPVALYHENVVEHYENPRNVGSLDKKDVTV
GTGLVGAPACGDVMKLQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWV
KGKSIDEAGKLKNTDIAKELRLPPVKLHCSMLAEDAIKAALADYKVKQQK
KVANASFLDH
BO07368.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9836-PA | 154 | CG9836-PA | 1..154 | 1..154 | 776 | 100 | Plus |