Clone BO07368 Report

Search the DGRC for BO07368

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:73
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG9836-RA
Protein status:BO07368.pep: validated full length
Sequenced Size:496

Clone Sequence Records

BO07368.3prime Sequence

494 bp (493 high quality bases) assembled on 2005-12-04

> BO07368.3prime
ATGGTCTAGAAAGCTTGCGTTGGCCACCTTCTTCTGCTGCTTGACCTTGT
AGTCAGCCAGGGCCGCCTTGATGGCATCCTCGGCCAGCATGGAGCAATGC
AGCTTGACGGGCGGCAGACGCAGCTCCTTGGCGATGTCCGTATTCTTCAG
CTTTCCGGCCTCGTCGATGGACTTGCCCTTCACCCACTCGGTGGCCAGGG
AGCTGCTGGCAATGGCCGATCCACAGCCGAAGGTCTTGAACTTGGCGTCC
ACTATCTTGCCGTTCTCGTCCACCTTGATCTGCAGTTTCATCACATCGCC
GCAGGCTGGTGCTCCGACCAAGCCGGTGCCCACAGTGACATCCTTCTTGT
CCAAAGATCCCACGTTGCGCGGGTTTTCGTAGTGCTCAACGACATTTTCA
TGATACAATGCCACCGGGACACTTTGTACGCGCTTCAGCTGCGATCGCAG
CAACCGGGAGGAGTTTCGCACCAGGGACATGTCGACTGATAACT

BO07368.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-PA 465 CG9836-RA 1..462 480..19 2310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-RA 955 CG9836-RA 107..568 480..19 2310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8823427..8823801 19..393 1875 100 Plus
3R 32079331 3R 8823983..8824071 392..480 445 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:24:22 has no hits.

BO07368.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:39 Download gff for BO07368.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-PA 1..465 16..480 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:08 Download gff for BO07368.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-PA 1..465 16..480 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:09 Download gff for BO07368.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 107..568 19..480 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:49:12 Download gff for BO07368.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 107..568 19..480 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:49:12 Download gff for BO07368.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8823427..8823801 19..393 100 <- Plus
3R 8823985..8824071 394..480 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:09 Download gff for BO07368.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4649149..4649523 19..393 100 <- Plus
arm_3R 4649707..4649793 394..480 100   Plus

BO07368.5prime Sequence

494 bp (493 high quality bases) assembled on 2005-12-04

> BO07368.5prime
GAAGTTATCAGTCGACATGTCCCTGGTGCGAAACTCCTCCCGGTTGCTGC
GATCGCAGCTGAAGCGCGTACAAAGTGTCCCGGTGGCATTGTATCATGAA
AATGTCGTTGAGCACTACGAAAACCCGCGCAACGTGGGATCTTTGGACAA
GAAGGATGTCACTGTGGGCACCGGCTTGGTCGGAGCACCAGCCTGCGGCG
ATGTGATGAAACTGCAGATCAAGGTGGACGAGAACGGCAAGATAGTGGAC
GCCAAGTTCAAGACCTTCGGCTGTGGATCGGCCATTGCCAGCAGCTCCCT
GGCCACCGAGTGGGTGAAGGGCAAGTCCATCGACGAGGCCGGAAAGCTGA
AGAATACGGACATCGCCAAGGAGCTGCGTCTGCCGCCCGTCAAGCTGCAT
TGCTCCATGCTGGCCGAGGATGCCATCAAGGCGGCCCTGGCTGACTACAA
GGTCAAGCAGCAGAAGAAGGTGGCCAACGCAAGCTTTCTAGACC

BO07368.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-PA 465 CG9836-RA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-RA 955 CG9836-RA 107..568 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8823427..8823801 478..104 1875 100 Minus
3R 32079331 3R 8823983..8824071 105..17 445 100 Minus
Blast to na_te.dros performed on 2015-02-12 09:58:40 has no hits.

BO07368.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:40 Download gff for BO07368.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-PA 1..465 17..481 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:09 Download gff for BO07368.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-PA 1..465 17..481 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:38 Download gff for BO07368.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 107..568 17..478 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:46 Download gff for BO07368.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 107..568 17..478 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:46 Download gff for BO07368.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8823427..8823801 104..478 100 <- Minus
3R 8823985..8824071 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:38 Download gff for BO07368.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4649149..4649523 104..478 100 <- Minus
arm_3R 4649707..4649793 17..103 100   Minus

BO07368.complete Sequence

496 bp (496 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630764

> BO07368.complete
GAAGTTATCAGTCGACATGTCCCTGGTGCGAAACTCCTCCCGGTTGCTGC
GATCGCAGCTGAAGCGCGTACAAAGTGTCCCGGTGGCATTGTATCATGAA
AATGTCGTTGAGCACTACGAAAACCCGCGCAACGTGGGATCTTTGGACAA
GAAGGATGTCACTGTGGGCACCGGCTTGGTCGGAGCACCAGCCTGCGGCG
ATGTGATGAAACTGCAGATCAAGGTGGACGAGAACGGCAAGATAGTGGAC
GCCAAGTTCAAGACCTTCGGCTGTGGATCGGCCATTGCCAGCAGCTCCCT
GGCCACCGAGTGGGTGAAGGGCAAGTCCATCGACGAGGCCGGAAAGCTGA
AGAATACGGACATCGCCAAGGAGCTGCGTCTGCCGCCCGTCAAGCTGCAT
TGCTCCATGCTGGCCGAGGATGCCATCAAGGCGGCCCTGGCTGACTACAA
GGTCAAGCAGCAGAAGAAGGTGGCCAACGCAAGCTTTCTAGACCAT

BO07368.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-RA 465 CG9836-PA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-RA 955 CG9836-RA 107..568 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8823427..8823801 478..104 1875 100 Minus
3R 32079331 3R 8823983..8824071 105..17 445 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:38:36 has no hits.

BO07368.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:30 Download gff for BO07368.complete
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 1..465 17..481 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:51 Download gff for BO07368.complete
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 103..564 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:25 Download gff for BO07368.complete
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 107..568 17..480 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:31 Download gff for BO07368.complete
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 103..564 17..478 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:32 Download gff for BO07368.complete
Subject Subject Range Query Range Percent Splice Strand
CG9836-RA 107..568 17..480 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:32 Download gff for BO07368.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8823424..8823801 104..480 99 <- Minus
3R 8823985..8824071 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:25 Download gff for BO07368.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4649146..4649523 104..480 99 <- Minus
arm_3R 4649707..4649793 17..103 100   Minus

BO07368.pep Sequence

Translation from 16 to 496

> BO07368.pep
MSLVRNSSRLLRSQLKRVQSVPVALYHENVVEHYENPRNVGSLDKKDVTV
GTGLVGAPACGDVMKLQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWV
KGKSIDEAGKLKNTDIAKELRLPPVKLHCSMLAEDAIKAALADYKVKQQK
KVANASFLDH

BO07368.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9836-PA 154 CG9836-PA 1..154 1..154 776 100 Plus