Clone Sequence Records
BO07369.3prime Sequence
845 bp (844 high quality bases) assembled on 2005-12-04
> BO07369.3prime
ATGGTCTAGAAAGCTTGCCAGCTTGGACTTGAGCGCCTTCATTAGCTTCT
CCAGCTTGAGAGCCTTCTGGAAATCGCCGCTGATCTTCAGCTTGCCGGTC
ATGTAGGCGGGAGCCGCCTTCAGTTTACCCGAGAACATGTCGAAGAAGTT
CTTCGAGTTCATGGTGAGCGTGGCGTCGGGAGCGGCAGTTGGCGTTCCGG
CACCGCAGGATCCGGAGCCGTTCTTCAGGTCCAGGAACCAGGTGCCCTGC
TCGGCGCCGCTGATGTTGAACTGGAAGACAGCCTGCGTCTTCGAGACGAT
CTCGGGCGAGAGGAGAGATTCGATTTTCCGGAACAGCTGCGGAATCTTGA
CGTCTCCTCCACTTGCGGGAGCAGCAGCATCTTCTGCCGCAGCTTCATTC
TCTACCGGAGCTCCCTTCTCCTCCACGAAGAAGTCCACCATCAGCTTGTC
GGCGTTCTCGCGGAAGCAGGCGTATTCGGTGAGATCAGTGATGCCCGCCG
ATTCCAGCACCTCGTCGTCCACAAAGAACTGACCAGTAGACTGCCTGGGC
TCACGGGTCAGGATTGCGTAGGCGGCATCGGCCATGATCTCCGGCTTGCG
TGACCACTTGGCGGAATCTGGACCCGTCAGCATCTCGATGGCCGCCGTGT
GAATGGCAGTGCGCGGCCACAGAGCGTTGACGGAGATTCCCTCGTCCTTG
AACTCCGCGGCCATGCCGAGCACACACATGGACATACCGTACTTGGCCAT
GGTGTAGGCCACATGCGGGCCAAACCACTTGGGCTTCATGCTCAGCGGCG
GCGAGATGTTGAGAATGTGGGCGTGGTTGCTCTTCTTCANGTACG
BO07369.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5590-PA | 1239 | CG5590-RA | 410..1236 | 845..19 | 4116 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5590-RA | 1492 | CG5590-RA | 572..1398 | 845..19 | 4124 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27678093..27678919 | 845..19 | 4124 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:51:20 has no hits.
BO07369.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:41 Download gff for
BO07369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-PA | 410..1239 | 18..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:11 Download gff for
BO07369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-PA | 410..1239 | 18..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:59 Download gff for
BO07369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 572..1398 | 19..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:53 Download gff for
BO07369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 572..1398 | 19..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:53 Download gff for
BO07369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27678093..27678919 | 19..845 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:59 Download gff for
BO07369.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23503815..23504641 | 19..845 | 99 | | Minus |
BO07369.5prime Sequence
846 bp (844 high quality bases) assembled on 2005-12-04
> BO07369.5prime
GAAGTTATCAGTCGACATGATCAACACAGGAAAACTAGCCGGACGGACCC
TGTTCATCACGGGAGCCTCTCGAGGAATTGGCAAGGAGATTGCTCTAAAG
GCGGCCCGCGATGGAGCCAACATTGTGGTGGCGGCCAAGACGGCGGAACC
GCATCCCAAGCTGCCGGGCACCATCTACTCGGCTGCGGAGGAGATCGAGA
AGGCCGGCGGAAAGGCCTATCCCTGCGTTGTGGATGTGCGGGATGAGCAA
CAGGTGCGCAGCGCCGTTGAGGCCGCGGTGGCCAAGTTCGGTGGCATCGA
CATTGTGATCAATAACGCCAGCGCCATCTCGCTGACCAATACCCCGGATA
CGGACATGAAGCGCTACGACCTGATGCACAACATCAATACTCGAGGCACC
TTTCTGGTGTCCAAGGTGTGCCTGCCGTACCTGAAGAAGAGCAACCACGC
CCACATTCTCAACATCTCGCCGCCGCTGAGCATGAAGCCCAAGTGGTTTG
GCCCGCATGTGGCCTACACCATGGCCAAGTACGGTATGTCCATGTGTGTG
CTCGGCATGGCCGCGGAGTTCAAGGACGAGGGAATCTCCGTCAACGCTCT
GTGGCCGCGCACTGCCATTCACACGGCGGCCATCGAGATGCTGACGGGTC
CAGATTCCGCCAAGTGGTCACGCAAGCCGGAGATCATGGCCGATGCCGCC
TACGCAATCCTGACCCGTGAGCCCAGGCAGTCTACTGGTCAGTTCTTTGT
GGACGACGAGGTGCTGGAATCGGCGGGCATCACTGATCTCACCGAATACG
CCTGCTTCCGCGAGAACGCCGACAAGCTGATGGTGGACTTCTTCGT
BO07369.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5590-PA | 1239 | CG5590-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5590-RA | 1492 | CG5590-RA | 163..992 | 17..846 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27677684..27678513 | 17..846 | 4150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:08:35 has no hits.
BO07369.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:42 Download gff for
BO07369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:12 Download gff for
BO07369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:06:10 Download gff for
BO07369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 159..992 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:46 Download gff for
BO07369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 159..992 | 9..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:46 Download gff for
BO07369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27677680..27678513 | 9..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:06:10 Download gff for
BO07369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23503402..23504235 | 9..846 | 99 | | Plus |
BO07369.complete Sequence
1270 bp (1270 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630765
> BO07369.complete
GAAGTTATCAGTCGACATGATCAACACAGGAAAACTAGCCGGACGGACCC
TGTTCATCACGGGAGCCTCTCGAGGAATTGGCAAGGAGATTGCTCTAAAG
GCGGCCCGCGATGGAGCCAACATTGTGGTGGCGGCCAAGACGGCGGAACC
GCATCCCAAGCTGCCGGGCACCATCTACTCGGCTGCGGAGGAGATCGAGA
AGGCCGGCGGAAAGGCCTATCCCTGCGTTGTGGATGTGCGGGATGAGCAA
CAGGTGCGCAGCGCCGTTGAGGCCGCGGTGGCCAAGTTCGGTGGCATCGA
CATTGTGATCAATAACGCCAGCGCCATCTCGCTGACCAATACCCCGGATA
CGGACATGAAGCGCTACGACCTGATGCACAACATCAATACTCGAGGCACC
TTTCTGGTGTCCAAGGTGTGCCTGCCGTACCTGAAGAAGAGCAACCACGC
CCACATTCTCAACATCTCGCCGCCGCTGAGCATGAAGCCCAAGTGGTTTG
GCCCGCATGTGGCCTACACCATGGCCAAGTACGGTATGTCCATGTGTGTG
CTCGGCATGGCCGCGGAGTTCAAGGACGAGGGAATCTCCGTCAACGCTCT
GTGGCCGCGCACTGCCATTCACACGGCGGCCATCGAGATGCTGACGGGTC
CAGATTCCGCCAAGTGGTCACGCAAGCCGGAGATCATGGCCGATGCCGCC
TACGCAATCCTGACCCGTGAGCCCAGGCAGTCTACTGGTCAGTTCTTTGT
GGACGACGAGGTGCTGGAATCGGCGGGCATCACTGATCTCACCGAATACG
CCTGCTTCCGCGAGAACGCCGACAAGCTGATGGTGGACTTCTTCGTGGAG
GAGAAGGGAGCTCCGGTAGAGAATGAAGCTGCGGCAGAAGATGCTGCTGC
TCCCGCAAGTGGAGGAGACGTCAAGATTCCGCAGCTGTTCCGGAAAATCG
AATCTCTCCTCTCGCCCGAGATCGTCTCGAAGACGCAGGCTGTCTTCCAG
TTCAACATCAGCGGCGCCGAGCAGGGCACCTGGTTCCTGGACCTGAAGAA
CGGCTCCGGATCCTGCGGTGCCGGAACGCCAACTGCCGCTCCCGACGCCA
CGCTCACCATGAACTCGAAGAACTTCTTCGACATGTTCTCGGGTAAACTG
AAGGCGGCTCCCGCCTACATGACCGGCAAGCTGAAGATCAGCGGCGATTT
CCAGAAGGCTCTCAAGCTGGAGAAGCTAATGAAGGCGCTCAAGTCCAAGC
TGGCAAGCTTTCTAGACCAT
BO07369.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5590-RA | 1239 | CG5590-PA | 1..1236 | 17..1252 | 6180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5590-RA | 1492 | CG5590-RA | 163..1398 | 17..1252 | 6180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27677684..27678919 | 17..1252 | 6180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:03:42 has no hits.
BO07369.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:57 Download gff for
BO07369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 1..1239 | 17..1253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:59 Download gff for
BO07369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 106..1345 | 9..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:43 Download gff for
BO07369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 163..1398 | 17..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:57 Download gff for
BO07369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 106..1345 | 9..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:04 Download gff for
BO07369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5590-RA | 163..1398 | 17..1254 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:04 Download gff for
BO07369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27677684..27678919 | 17..1254 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:43 Download gff for
BO07369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23503406..23504641 | 17..1254 | 99 | | Plus |
BO07369.pep Sequence
Translation from 16 to 1270
> BO07369.pep
MINTGKLAGRTLFITGASRGIGKEIALKAARDGANIVVAAKTAEPHPKLP
GTIYSAAEEIEKAGGKAYPCVVDVRDEQQVRSAVEAAVAKFGGIDIVINN
ASAISLTNTPDTDMKRYDLMHNINTRGTFLVSKVCLPYLKKSNHAHILNI
SPPLSMKPKWFGPHVAYTMAKYGMSMCVLGMAAEFKDEGISVNALWPRTA
IHTAAIEMLTGPDSAKWSRKPEIMADAAYAILTREPRQSTGQFFVDDEVL
ESAGITDLTEYACFRENADKLMVDFFVEEKGAPVENEAAAEDAAAPASGG
DVKIPQLFRKIESLLSPEIVSKTQAVFQFNISGAEQGTWFLDLKNGSGSC
GAGTPTAAPDATLTMNSKNFFDMFSGKLKAAPAYMTGKLKISGDFQKALK
LEKLMKALKSKLASFLDH
BO07369.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5590-PA | 412 | CG5590-PA | 1..412 | 1..412 | 2109 | 100 | Plus |
| Mfe2-PB | 598 | CG3415-PB | 6..239 | 5..243 | 220 | 31.2 | Plus |
| Mfe2-PA | 598 | CG3415-PA | 6..239 | 5..243 | 220 | 31.2 | Plus |
| CG3699-PA | 251 | CG3699-PA | 3..179 | 7..197 | 209 | 30.4 | Plus |
| CG12171-PA | 257 | CG12171-PA | 7..189 | 10..201 | 196 | 26.9 | Plus |
