Clone Sequence Records
BO07370.3prime Sequence
926 bp (819 high quality bases) assembled on 2005-12-04
> BO07370.3prime
ATGGTCTAGAAAGCTTGCCAGGTAGACAAAGTGTCCCAGTCCCTTGGCCG
GGTTGTTGTTGACGGCCTCCGCCGTGAGTTTGGTACTGGTATTGCCGTTC
ATGTCCTGGGTCTCCGTCTCCGCCACAGGCATAAGTCTGCCGTAGACTCC
TCCGGACGCAAAGCGGGCGTTCATGTGGATGTCAAGCAGCTTCTTGTCCT
TCCCCAGCGAGGAGAAGGAGTGCGAGGCGGTTCGAATCTCGCGTATGTTG
TACACGGGGCTGTAGACTCGGGCGGGTGACACGGACACCGCCACTTGGGG
CACAACTGGAGCAGGAGCTGCGGGCGTGGTGTGGACGTAAAAGTCCCGGC
GTAGGGCACATTCTGTGGAATTATCCGAGGAGCCAGAACTGCTAGCACAC
TCGTCTTCATCCTCGGCATCCTCGCTGCTGCTGCAGCTTCGCAGATCCTC
GGAGAGCGACAGATCCGACTCCAAGGAGAGCTCCAGGAGACTGGTTGCAT
CCTCTGCCGCCTCCGCGGCCTGTCCAATTGCCTCGTTTAGGTTGGCCAAC
AGCTGGCGCCGGCGTGCGTAATTGGGCGTTCGGCGCACCAGGAAGTGACA
GCCTTCGCCCCGCTTCATCCGCTCCATCTGAGTGCGCAGTGGAAGGTCGT
CCGGGTGCAATTTTCGCTGACACTCCTGGCCGGGACACACCTCGTACAGC
GAGAAGTTCTCGACCGGCTCGGGTGAACTGTAACAGCCGAGGAGCAGGTG
CAGCAGCTCGTCACAGGTGGTCTCCTCGCTGATGACCAGCGACTTGTACT
GAGAGCTGGGCTGCAGCGCGGAGGTGTGGACGCGGATCAGGCCACCTGGT
TTTAGCTGCAGACAGAATCGGGACTCGCCCTTCGGATGACAGGCCTGCAT
GATGGCCGGCCGGGTGTCGTCGTCCA
BO07370.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8965-PA | 1293 | CG8965-RA | 383..1290 | 926..19 | 4540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rau-RB | 2268 | CG8965-RB | 947..1854 | 926..19 | 4540 | 100 | Minus |
| rau-RA | 2215 | CG8965-RA | 894..1801 | 926..19 | 4540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5860183..5861090 | 19..926 | 4540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 14:06:34 has no hits.
BO07370.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:43 Download gff for
BO07370.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-PA | 384..1293 | 18..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:13 Download gff for
BO07370.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-PA | 384..1293 | 18..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:04:49 Download gff for
BO07370.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-RA | 895..1805 | 13..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:02 Download gff for
BO07370.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rau-RA | 895..1805 | 13..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:02 Download gff for
BO07370.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5860186..5861089 | 22..925 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:04:49 Download gff for
BO07370.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5860186..5861089 | 22..925 | 100 | | Plus |
BO07370.5prime Sequence
905 bp (783 high quality bases) assembled on 2005-12-04
> BO07370.5prime
GAAGTTATCAGTCGACATGCTGAAGCACGTGCAAATCTCGCCGCTGCGAA
ATCGATCCGATTCGGTGTCCCTTCGCTCCTCCAGCCACGCCTCCTCGTGC
GCCAGCTCCATGTGCGGCAGTCCGGAGCCTCCGGCGGAGCTGCAGAGAAC
ACCCTCGAGGGCCTCCAGTTACTCCAGCCTCAACGAGCAGCTGCCACAGA
CCACAATCAAGGTGTACACAAACTGCCTGAAGATCGACATCGAGTACAAG
ACCCTTGGAATCCAGTGGGACACTACAAGCAAGGAGGTTATTGGCCAGCT
GCTAAGACGCCTCAAGATGCGACATCGCGATCCACGCCTGTTCTACCTAT
CCATGGAGGTAGCTGTGCGTCGGGCTGGAGTGAAGACCATCTTGGTGCTG
GACGACGACACCCGGCCGGCCATCATGCAGGCCTGTCATCCGAAGGGCGA
GTCCCGATTCTGTCTGCAGCTAAAACCAGGTGGCCTGATCCGCGTCCACA
CCTCCGCGCTGCAGCCCAGCTCTCAGTACAAGTCGCTGGTCATCAGCGAG
GAGACCACCTGTGACGAGCTGCTGCACCTGCTCCTCGGCTGTTACAGTTC
ACCCGAGCCGGTCGAGAACTTCTCGCTGTACGAGGTGTGTCCCGGCCAGG
AGTGTCAGCGAAAATTGCACCCGGACGACCTTCCACTGCGCACTCAGATG
GAGCGGATGAAGCGGGGCGAAGGCTGTCACTTCCTGGTGCGCCGAACGCC
CAATTACGCACGCCGGCGCCAGCTGTTGGCCAACCTAAACGAGGCAATTG
GACAGGCCGCGGAGGCGGCAGAGGATGCAACCAGTCTCCTGGAGCTCTCC
TTGGAGTCGGATCTGTCGCTCTCCGAGGATCTGCGAAGCTGCAGCAGCAG
CGAGG
BO07370.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8965-PA | 1293 | CG8965-RA | 1..889 | 17..905 | 4445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rau-RB | 2268 | CG8965-RB | 565..1453 | 17..905 | 4445 | 100 | Plus |
| rau-RA | 2215 | CG8965-RA | 512..1400 | 17..905 | 4445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5860584..5861180 | 905..309 | 2985 | 100 | Minus |
| 2L | 23513712 | 2L | 5861425..5861607 | 199..17 | 915 | 100 | Minus |
| 2L | 23513712 | 2L | 5861252..5861367 | 309..194 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:21:51 has no hits.
BO07370.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:44 Download gff for
BO07370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-PA | 1..889 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:15 Download gff for
BO07370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-PA | 1..889 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:13 Download gff for
BO07370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-RA | 512..1400 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:45:03 Download gff for
BO07370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rau-RA | 512..1400 | 17..905 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:45:03 Download gff for
BO07370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5860584..5861179 | 310..905 | 100 | <- | Minus |
| 2L | 5861252..5861361 | 200..309 | 100 | <- | Minus |
| 2L | 5861425..5861607 | 17..199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:13 Download gff for
BO07370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5860584..5861179 | 310..905 | 100 | <- | Minus |
| arm_2L | 5861252..5861361 | 200..309 | 100 | <- | Minus |
| arm_2L | 5861425..5861607 | 17..199 | 100 | | Minus |
BO07370.complete Sequence
1324 bp (1324 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630766
> BO07370.complete
GAAGTTATCAGTCGACATGCTGAAGCACGTGCAAATCTCGCCGCTGCGAA
ATCGATCCGATTCGGTGTCCCTTCGCTCCTCCAGCCACGCCTCCTCGTGC
GCCAGCTCCATGTGCGGCAGTCCGGAGCCTCCGGCGGAGCTGCAGAGAAC
ACCCTCGAGGGCCTCCAGTTACTCCAGCCTCAACGAGCAGCTGCCACAGA
CCACAATCAAGGTGTACACAAACTGCCTGAAGATCGACATCGAGTACAAG
ACCCTTGGAATCCAGTGGGACACTACAAGCAAGGAGGTTATTGGCCAGCT
GCTAAGACGCCTCAAGATGCGACATCGCGATCCACGCCTGTTCTACCTAT
CCATGGAGGTAGCTGTGCGTCGGGCTGGAGTGAAGACCATCTTGGTGCTG
GACGACGACACCCGGCCGGCCATCATGCAGGCCTGTCATCCGAAGGGCGA
GTCCCGATTCTGTCTGCAGCTAAAACCAGGTGGCCTGATCCGCGTCCACA
CCTCCGCGCTGCAGCCCAGCTCTCAGTACAAGTCGCTGGTCATCAGCGAG
GAGACCACCTGTGACGAGCTGCTGCACCTGCTCCTCGGCTGTTACAGTTC
ACCCGAGCCGGTCGAGAACTTCTCGCTGTACGAGGTGTGTCCCGGCCAGG
AGTGTCAGCGAAAATTGCACCCGGACGACCTTCCACTGCGCACTCAGATG
GAGCGGATGAAGCGGGGCGAAGGCTGTCACTTCCTGGTGCGCCGAACGCC
CAATTACGCACGCCGGCGCCAGCTGTTGGCCAACCTAAACGAGGCAATTG
GACAGGCCGCGGAGGCGGCAGAGGATGCAACCAGTCTCCTGGAGCTCTCC
TTGGAGTCGGATCTGTCGCTCTCCGAGGATCTGCGAAGCTGCAGCAGCAG
CGAGGATGCCGAGGATGAAGACGAGTGTGCTAGCAGTTCTGGCTCCTCGG
ATAATTCCACAGAATGTGCCCTACGCCGGGACTTTTACGTCCACACCACG
CCCGCAGCTCCTGCTCCAGTTGTGCCCCAAGTGGCGGTGTCCGTGTCACC
CGCCCGAGTCTACAGCCCCGTGTACAACATACGCGAGATTCGAACCGCCT
CGCACTCCTTCTCCTCGCTGGGGAAGGACAAGAAGCTGCTTGACATCCAC
ATGAACGCCCGCTTTGCGTCCGGAGGAGTCTACGGCAGACTTATGCCTGT
GGCGGAGACGGAGACCCAGGACATGAACGGCAATACCAGTACCAAACTCA
CGGCGGAGGCCGTCAACAACAACCCGGCCAAGGGACTGGGACACTTTGTC
TACCTGGCAAGCTTTCTAGACCAT
BO07370.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rau-RB | 1293 | CG8965-PB | 1..1290 | 17..1306 | 6450 | 100 | Plus |
| rau-RA | 1293 | CG8965-PA | 1..1290 | 17..1306 | 6450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rau-RB | 2268 | CG8965-RB | 565..1854 | 17..1306 | 6450 | 100 | Plus |
| rau-RA | 2215 | CG8965-RA | 512..1801 | 17..1306 | 6450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5860183..5861180 | 1306..309 | 4990 | 100 | Minus |
| 2L | 23513712 | 2L | 5861425..5861607 | 199..17 | 915 | 100 | Minus |
| 2L | 23513712 | 2L | 5861252..5861367 | 309..194 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:52:23 has no hits.
BO07370.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:43 Download gff for
BO07370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-RA | 1..1293 | 17..1307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:46 Download gff for
BO07370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-RA | 495..1788 | 17..1312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:14 Download gff for
BO07370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-RA | 512..1801 | 17..1308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:43 Download gff for
BO07370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8965-RA | 495..1788 | 17..1312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:45 Download gff for
BO07370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rau-RA | 512..1801 | 17..1308 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:45 Download gff for
BO07370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5860179..5861179 | 310..1308 | 99 | <- | Minus |
| 2L | 5861252..5861361 | 200..309 | 100 | <- | Minus |
| 2L | 5861425..5861607 | 17..199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:14 Download gff for
BO07370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5860179..5861179 | 310..1308 | 99 | <- | Minus |
| arm_2L | 5861252..5861361 | 200..309 | 100 | <- | Minus |
| arm_2L | 5861425..5861607 | 17..199 | 100 | | Minus |
BO07370.pep Sequence
Translation from 16 to 1324
> BO07370.pep
MLKHVQISPLRNRSDSVSLRSSSHASSCASSMCGSPEPPAELQRTPSRAS
SYSSLNEQLPQTTIKVYTNCLKIDIEYKTLGIQWDTTSKEVIGQLLRRLK
MRHRDPRLFYLSMEVAVRRAGVKTILVLDDDTRPAIMQACHPKGESRFCL
QLKPGGLIRVHTSALQPSSQYKSLVISEETTCDELLHLLLGCYSSPEPVE
NFSLYEVCPGQECQRKLHPDDLPLRTQMERMKRGEGCHFLVRRTPNYARR
RQLLANLNEAIGQAAEAAEDATSLLELSLESDLSLSEDLRSCSSSEDAED
EDECASSSGSSDNSTECALRRDFYVHTTPAAPAPVVPQVAVSVSPARVYS
PVYNIREIRTASHSFSSLGKDKKLLDIHMNARFASGGVYGRLMPVAETET
QDMNGNTSTKLTAEAVNNNPAKGLGHFVYLASFLDH
BO07370.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rau-PB | 430 | CG8965-PB | 1..430 | 1..430 | 2213 | 100 | Plus |
| rau-PA | 430 | CG8965-PA | 1..430 | 1..430 | 2213 | 100 | Plus |
