Clone Sequence Records
BO07372.3prime Sequence
659 bp (658 high quality bases) assembled on 2005-12-04
> BO07372.3prime
ATGGTCTAGAAAGCTTGCGGCAGCGGTCTGGATGACATCGGTGTAGAGCT
TGACCTTAGTGGCAATGCTCATGTCGACGTACTTGTCGCCAATGGAAACG
ATCAGGCCACCAATGATGCTGGGGTCCACGCGGGAAGTGATCTTCAGAGA
CTCGTTGCCCTTCAGGAAAGACTTAAGGGCACCCTCCAGCTGCTTGCTCT
GGGACGCATCCAAGGGCTTGGCGGTGACCACCTCGCAGACGACCTCACCG
CGATGTGCGGCCATGATGGTCTTGTAGGCATTGATCACGGTGTCCAGCTT
CTTTAGACGTCCGTTGTCAGCCAGCAGACCCAACAGATTGACGGTGGCCG
GGGCGAAGCGGAGCTTCTCGGATGCCTCCTTCAGAGCGGTGGCCATGACC
TTCTTGTTGATGATGGGGCTGGTCACGTACTCGCGCAGCTTCTTGTCGCT
ACGGATGGTGGCCTGCAGGGCCGTCAGATCCTTCTCCACCTGATCCAACT
GGCTCAACTTGGAGGCAGCCGAATACAGGGCGGTAGCATAGCGACCCTCC
AGACCGAACACCTGCACTGGTGGCTTCACCGTCGCCTGGGCGGCAGCGGA
GCTGAGGGTGCGGCTCAAAAGTGCCAATTTGTTAATAGAGGCCATGTCGA
CTGATAACT
BO07372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4307-PA | 630 | Oscp-RA | 1..627 | 645..19 | 3135 | 100 | Minus |
CG4307-PB | 381 | Oscp-RB | 1..378 | 396..19 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 802 | CG4307-RA | 71..697 | 645..19 | 3135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15265926..15266370 | 616..172 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 15266431..15266585 | 173..19 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:05:49 has no hits.
BO07372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:47 Download gff for
BO07372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-PA | 1..630 | 18..645 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:19 Download gff for
BO07372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4307-PA | 1..630 | 18..645 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:25:11 Download gff for
BO07372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 71..697 | 19..645 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:57:37 Download gff for
BO07372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 71..697 | 19..645 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:57:37 Download gff for
BO07372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15266433..15266585 | 19..171 | 100 | | Minus |
3R | 15265661..15265690 | 616..645 | 100 | -> | Minus |
3R | 15265927..15266370 | 172..615 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:25:11 Download gff for
BO07372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11091383..11091412 | 616..645 | 100 | -> | Minus |
arm_3R | 11091649..11092092 | 172..615 | 100 | -> | Minus |
arm_3R | 11092155..11092307 | 19..171 | 100 | | Minus |
BO07372.5prime Sequence
659 bp (658 high quality bases) assembled on 2005-12-04
> BO07372.5prime
GAAGTTATCAGTCGACATGGCCTCTATTAACAAATTGGCACTTTTGAGCC
GCACCCTCAGCTCCGCTGCCGCCCAGGCGACGGTGAAGCCACCAGTGCAG
GTGTTCGGTCTGGAGGGTCGCTATGCTACCGCCCTGTATTCGGCTGCCTC
CAAGTTGAGCCAGTTGGATCAGGTGGAGAAGGATCTGACGGCCCTGCAGG
CCACCATCCGTAGCGACAAGAAGCTGCGCGAGTACGTGACCAGCCCCATC
ATCAACAAGAAGGTCATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGCT
CCGCTTCGCCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAACG
GACGTCTAAAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCATG
GCCGCACATCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCTT
GGATGCGTCCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTGA
AGGGCAACGAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCATT
GGTGGCCTGATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTGC
CACTAAGGTCAAGCTCTACACCGATGTCATCCAGACCGCTGCCGCAAGCT
TTCTAGACC
BO07372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4307-PA | 630 | Oscp-RA | 1..627 | 17..643 | 3135 | 100 | Plus |
CG4307-PB | 381 | Oscp-RB | 1..378 | 266..643 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 802 | CG4307-RA | 71..697 | 17..643 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15265926..15266370 | 46..490 | 2225 | 100 | Plus |
3R | 32079331 | 3R | 15266431..15266585 | 489..643 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:58:42 has no hits.
BO07372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:48 Download gff for
BO07372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-PA | 1..630 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:20 Download gff for
BO07372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4307-PA | 1..630 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:41 Download gff for
BO07372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 71..697 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:48 Download gff for
BO07372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 71..697 | 17..643 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:48 Download gff for
BO07372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15265661..15265690 | 17..46 | 100 | -> | Plus |
3R | 15265927..15266370 | 47..490 | 100 | -> | Plus |
3R | 15266433..15266585 | 491..643 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:41 Download gff for
BO07372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11091383..11091412 | 17..46 | 100 | -> | Plus |
arm_3R | 11091649..11092092 | 47..490 | 100 | -> | Plus |
arm_3R | 11092155..11092307 | 491..643 | 100 | | Plus |
BO07372.complete Sequence
661 bp (661 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630767
> BO07372.complete
GAAGTTATCAGTCGACATGGCCTCTATTAACAAATTGGCACTTTTGAGCC
GCACCCTCAGCTCCGCTGCCGCCCAGGCGACGGTGAAGCCACCAGTGCAG
GTGTTCGGTCTGGAGGGTCGCTATGCTACCGCCCTGTATTCGGCTGCCTC
CAAGTTGAGCCAGTTGGATCAGGTGGAGAAGGATCTGACGGCCCTGCAGG
CCACCATCCGTAGCGACAAGAAGCTGCGCGAGTACGTGACCAGCCCCATC
ATCAACAAGAAGGTCATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGCT
CCGCTTCGCCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAACG
GACGTCTAAAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCATG
GCCGCACATCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCTT
GGATGCGTCCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTGA
AGGGCAACGAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCATT
GGTGGCCTGATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTGC
CACTAAGGTCAAGCTCTACACCGATGTCATCCAGACCGCTGCCGCAAGCT
TTCTAGACCAT
BO07372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 630 | CG4307-PA | 1..627 | 17..643 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 802 | CG4307-RA | 71..697 | 17..643 | 3135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15265926..15266370 | 46..490 | 2225 | 100 | Plus |
3R | 32079331 | 3R | 15266431..15266585 | 489..643 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:51:08 has no hits.
BO07372.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:13 Download gff for
BO07372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 1..630 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:09 Download gff for
BO07372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 86..712 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:01 Download gff for
BO07372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 71..697 | 17..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:14 Download gff for
BO07372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 86..712 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:07 Download gff for
BO07372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 71..697 | 17..645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:07 Download gff for
BO07372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15265661..15265690 | 17..46 | 100 | -> | Plus |
3R | 15265927..15266370 | 47..490 | 100 | -> | Plus |
3R | 15266433..15266585 | 491..645 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:01 Download gff for
BO07372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11091383..11091412 | 17..46 | 100 | -> | Plus |
arm_3R | 11091649..11092092 | 47..490 | 100 | -> | Plus |
arm_3R | 11092155..11092307 | 491..645 | 98 | | Plus |
BO07372.pep Sequence
Translation from 16 to 661
> BO07372.pep
MASINKLALLSRTLSSAAAQATVKPPVQVFGLEGRYATALYSAASKLSQL
DQVEKDLTALQATIRSDKKLREYVTSPIINKKVMATALKEASEKLRFAPA
TVNLLGLLADNGRLKKLDTVINAYKTIMAAHRGEVVCEVVTAKPLDASQS
KQLEGALKSFLKGNESLKITSRVDPSIIGGLIVSIGDKYVDMSIATKVKL
YTDVIQTAAASFLDH
BO07372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-PA | 209 | CG4307-PA | 1..209 | 1..209 | 1004 | 100 | Plus |