Clone BO07372 Report

Search the DGRC for BO07372

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:73
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptOscp-RA
Protein status:BO07372.pep: validated full length
Sequenced Size:661

Clone Sequence Records

BO07372.3prime Sequence

659 bp (658 high quality bases) assembled on 2005-12-04

> BO07372.3prime
ATGGTCTAGAAAGCTTGCGGCAGCGGTCTGGATGACATCGGTGTAGAGCT
TGACCTTAGTGGCAATGCTCATGTCGACGTACTTGTCGCCAATGGAAACG
ATCAGGCCACCAATGATGCTGGGGTCCACGCGGGAAGTGATCTTCAGAGA
CTCGTTGCCCTTCAGGAAAGACTTAAGGGCACCCTCCAGCTGCTTGCTCT
GGGACGCATCCAAGGGCTTGGCGGTGACCACCTCGCAGACGACCTCACCG
CGATGTGCGGCCATGATGGTCTTGTAGGCATTGATCACGGTGTCCAGCTT
CTTTAGACGTCCGTTGTCAGCCAGCAGACCCAACAGATTGACGGTGGCCG
GGGCGAAGCGGAGCTTCTCGGATGCCTCCTTCAGAGCGGTGGCCATGACC
TTCTTGTTGATGATGGGGCTGGTCACGTACTCGCGCAGCTTCTTGTCGCT
ACGGATGGTGGCCTGCAGGGCCGTCAGATCCTTCTCCACCTGATCCAACT
GGCTCAACTTGGAGGCAGCCGAATACAGGGCGGTAGCATAGCGACCCTCC
AGACCGAACACCTGCACTGGTGGCTTCACCGTCGCCTGGGCGGCAGCGGA
GCTGAGGGTGCGGCTCAAAAGTGCCAATTTGTTAATAGAGGCCATGTCGA
CTGATAACT

BO07372.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4307-PA 630 Oscp-RA 1..627 645..19 3135 100 Minus
CG4307-PB 381 Oscp-RB 1..378 396..19 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
Oscp-RA 802 CG4307-RA 71..697 645..19 3135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15265926..15266370 616..172 2225 100 Minus
3R 32079331 3R 15266431..15266585 173..19 775 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:05:49 has no hits.

BO07372.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:47 Download gff for BO07372.3prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-PA 1..630 18..645 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:19 Download gff for BO07372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4307-PA 1..630 18..645 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:25:11 Download gff for BO07372.3prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 71..697 19..645 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:57:37 Download gff for BO07372.3prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 71..697 19..645 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:57:37 Download gff for BO07372.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15266433..15266585 19..171 100   Minus
3R 15265661..15265690 616..645 100 -> Minus
3R 15265927..15266370 172..615 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:25:11 Download gff for BO07372.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11091383..11091412 616..645 100 -> Minus
arm_3R 11091649..11092092 172..615 100 -> Minus
arm_3R 11092155..11092307 19..171 100   Minus

BO07372.5prime Sequence

659 bp (658 high quality bases) assembled on 2005-12-04

> BO07372.5prime
GAAGTTATCAGTCGACATGGCCTCTATTAACAAATTGGCACTTTTGAGCC
GCACCCTCAGCTCCGCTGCCGCCCAGGCGACGGTGAAGCCACCAGTGCAG
GTGTTCGGTCTGGAGGGTCGCTATGCTACCGCCCTGTATTCGGCTGCCTC
CAAGTTGAGCCAGTTGGATCAGGTGGAGAAGGATCTGACGGCCCTGCAGG
CCACCATCCGTAGCGACAAGAAGCTGCGCGAGTACGTGACCAGCCCCATC
ATCAACAAGAAGGTCATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGCT
CCGCTTCGCCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAACG
GACGTCTAAAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCATG
GCCGCACATCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCTT
GGATGCGTCCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTGA
AGGGCAACGAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCATT
GGTGGCCTGATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTGC
CACTAAGGTCAAGCTCTACACCGATGTCATCCAGACCGCTGCCGCAAGCT
TTCTAGACC

BO07372.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4307-PA 630 Oscp-RA 1..627 17..643 3135 100 Plus
CG4307-PB 381 Oscp-RB 1..378 266..643 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
Oscp-RA 802 CG4307-RA 71..697 17..643 3135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15265926..15266370 46..490 2225 100 Plus
3R 32079331 3R 15266431..15266585 489..643 775 100 Plus
Blast to na_te.dros performed on 2015-02-12 09:58:42 has no hits.

BO07372.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:48 Download gff for BO07372.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-PA 1..630 17..644 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:20 Download gff for BO07372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4307-PA 1..630 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:41 Download gff for BO07372.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 71..697 17..643 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:48 Download gff for BO07372.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 71..697 17..643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:48 Download gff for BO07372.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15265661..15265690 17..46 100 -> Plus
3R 15265927..15266370 47..490 100 -> Plus
3R 15266433..15266585 491..643 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:41 Download gff for BO07372.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11091383..11091412 17..46 100 -> Plus
arm_3R 11091649..11092092 47..490 100 -> Plus
arm_3R 11092155..11092307 491..643 100   Plus

BO07372.complete Sequence

661 bp (661 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630767

> BO07372.complete
GAAGTTATCAGTCGACATGGCCTCTATTAACAAATTGGCACTTTTGAGCC
GCACCCTCAGCTCCGCTGCCGCCCAGGCGACGGTGAAGCCACCAGTGCAG
GTGTTCGGTCTGGAGGGTCGCTATGCTACCGCCCTGTATTCGGCTGCCTC
CAAGTTGAGCCAGTTGGATCAGGTGGAGAAGGATCTGACGGCCCTGCAGG
CCACCATCCGTAGCGACAAGAAGCTGCGCGAGTACGTGACCAGCCCCATC
ATCAACAAGAAGGTCATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGCT
CCGCTTCGCCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAACG
GACGTCTAAAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCATG
GCCGCACATCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCTT
GGATGCGTCCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTGA
AGGGCAACGAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCATT
GGTGGCCTGATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTGC
CACTAAGGTCAAGCTCTACACCGATGTCATCCAGACCGCTGCCGCAAGCT
TTCTAGACCAT

BO07372.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
Oscp-RA 630 CG4307-PA 1..627 17..643 3135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Oscp-RA 802 CG4307-RA 71..697 17..643 3135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15265926..15266370 46..490 2225 100 Plus
3R 32079331 3R 15266431..15266585 489..643 775 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:51:08 has no hits.

BO07372.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:13 Download gff for BO07372.complete
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 1..630 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:09 Download gff for BO07372.complete
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 86..712 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:01 Download gff for BO07372.complete
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 71..697 17..645 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:14 Download gff for BO07372.complete
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 86..712 17..643 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:07 Download gff for BO07372.complete
Subject Subject Range Query Range Percent Splice Strand
Oscp-RA 71..697 17..645 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:07 Download gff for BO07372.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15265661..15265690 17..46 100 -> Plus
3R 15265927..15266370 47..490 100 -> Plus
3R 15266433..15266585 491..645 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:01 Download gff for BO07372.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11091383..11091412 17..46 100 -> Plus
arm_3R 11091649..11092092 47..490 100 -> Plus
arm_3R 11092155..11092307 491..645 98   Plus

BO07372.pep Sequence

Translation from 16 to 661

> BO07372.pep
MASINKLALLSRTLSSAAAQATVKPPVQVFGLEGRYATALYSAASKLSQL
DQVEKDLTALQATIRSDKKLREYVTSPIINKKVMATALKEASEKLRFAPA
TVNLLGLLADNGRLKKLDTVINAYKTIMAAHRGEVVCEVVTAKPLDASQS
KQLEGALKSFLKGNESLKITSRVDPSIIGGLIVSIGDKYVDMSIATKVKL
YTDVIQTAAASFLDH

BO07372.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
Oscp-PA 209 CG4307-PA 1..209 1..209 1004 100 Plus