Clone Sequence Records
BO07373.3prime Sequence
713 bp (712 high quality bases) assembled on 2005-12-04
> BO07373.3prime
ATGGTCTAGAAAGCTTGCGTCGTTGATGGGGGTCTCCTCGTCCTTTATCT
TGGTTTTGGCATACTTGCGAGCCTTGCCCAAATGGTAAGCGGTGAACAAG
CCCAAAAACTCGAGGGCAATGATCGCCATGCAGCTGTAGTAGTTGAGCTC
CGCCTGCATTCTCAGAGTAGCTACCGCCTTGGTGGAGCATCCCTCCTCGT
AGACGTGCGCCGGCTTGGAGCAGTCGAAGGCGTAGCAGCAGCTGCTGGGC
AGGGCGCCGTGCTCCTCCTGAAGGTAGTCCTGCGGTCCCTCAATGCCGCA
GCAGCCGAAGAGGCTGTGCACTGGCTGCATCTTGTCGTCGCTGTGGGTCT
TTCGCTCGAAGAGGTCGCGCATGCGCTCCTCGAACCTGCCCATCAGCTGC
TCCCGCATCGCCGTGAAGGTGAAGAGGTAGGAGCCCAGGGCGGCTATAAC
CAGGCCACTGCAAATTAGGTAGTATATGGAATACTTGTACGACACCTTCA
AGGCCACGTACATGCCCAGGAAGGCGACTCCGAAAACTGCTCCTCCGCAA
AGTGCCGACCCATAGCTGCCGTAGACGGAGACGGCCGAACCCCAGGTGGT
CACGCCACAGGAGAAGAAGAACACGTTGCACGTCACAATGAGAATGCAGG
TGACCAGTAGGCCGTACTTCCAGGGTGTTATGGGAAACGACTTCTCCATG
TCGACTGATAACT
BO07373.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12143-PA | 684 | Tsp42Ej-RA | 1..681 | 699..19 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ej-RA | 1116 | CG12143-RA | 341..1023 | 701..19 | 3415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7041785..7042147 | 471..109 | 1815 | 100 | Minus |
2R | 25286936 | 2R | 7041568..7041730 | 634..472 | 815 | 100 | Minus |
2R | 25286936 | 2R | 7042578..7042669 | 110..19 | 460 | 100 | Minus |
2R | 25286936 | 2R | 7040476..7040543 | 701..634 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:58:49 has no hits.
BO07373.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:50 Download gff for
BO07373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12143-PA | 1..684 | 16..699 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:21 Download gff for
BO07373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12143-PA | 1..684 | 16..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:43 Download gff for
BO07373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 341..1023 | 19..701 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:53 Download gff for
BO07373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 341..1023 | 19..701 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:53 Download gff for
BO07373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7042580..7042669 | 19..108 | 100 | | Minus |
2R | 7040476..7040543 | 634..701 | 100 | -> | Minus |
2R | 7041569..7041730 | 472..633 | 100 | -> | Minus |
2R | 7041785..7042147 | 109..471 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:43 Download gff for
BO07373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2930085..2930174 | 19..108 | 100 | | Minus |
arm_2R | 2927981..2928048 | 634..701 | 100 | -> | Minus |
arm_2R | 2929074..2929235 | 472..633 | 100 | -> | Minus |
arm_2R | 2929290..2929652 | 109..471 | 100 | -> | Minus |
BO07373.5prime Sequence
713 bp (712 high quality bases) assembled on 2005-12-04
> BO07373.5prime
GAAGTTATCAGTCGACATGGAGAAGTCGTTTCCCATAACACCCTGGAAGT
ACGGCCTACTGGTCACCTGCATTCTCATTGTGACGTGCAACGTGTTCTTC
TTCTCCTGTGGCGTGACCACCTGGGGTTCGGCCGTCTCCGTCTACGGCAG
CTATGGGTCGGCACTTTGCGGAGGAGCAGTTTTCGGAGTCGCCTTCCTGG
GCATGTACGTGGCCTTGAAGGTGTCGTACAAGTATTCCATATACTACCTA
ATTTGCAGTGGCCTGGTTATAGCCGCCCTGGGCTCCTACCTCTTCACCTT
CACGGCGATGCGGGAGCAGCTGATGGGCAGGTTCGAGGAGCGCATGCGCG
ACCTCTTCGAGCGAAAGACCCACAGCGACGACAAGATGCAGCCAGTGCAC
AGCCTCTTCGGCTGCTGCGGCATTGAGGGACCGCAGGACTACCTTCAGGA
GGAGCACGGCGCCCTGCCCAGCAGCTGCTGCTACGCCTTCGACTGCTCCA
AGCCGGCGCACGTCTACGAGGAGGGATGCTCCACCAAGGCGGTAGCTACT
CTGAGAATGCAGGCGGAGCTCAACTACTACAGCTGCATGGCGATCATTGC
CCTCGAGTTTTTGGGCTTGTTCACCGCTTACCATTTGGGCAAGGCTCGCA
AGTATGCCAAAACCAAGATAAAGGACGAGGAGACCCCCATCAACGACGCA
AGCTTTCTAGACC
BO07373.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12143-PA | 684 | Tsp42Ej-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ej-RA | 1116 | CG12143-RA | 341..1023 | 15..697 | 3415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7041785..7042147 | 245..607 | 1815 | 100 | Plus |
2R | 25286936 | 2R | 7041568..7041730 | 82..244 | 815 | 100 | Plus |
2R | 25286936 | 2R | 7042578..7042669 | 606..697 | 460 | 100 | Plus |
2R | 25286936 | 2R | 7040476..7040543 | 15..82 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:58:51 has no hits.
BO07373.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:51 Download gff for
BO07373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12143-PA | 1..684 | 17..700 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:23 Download gff for
BO07373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12143-PA | 1..684 | 17..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:44 Download gff for
BO07373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 341..1023 | 15..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:56 Download gff for
BO07373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 341..1023 | 15..697 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:56 Download gff for
BO07373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7040476..7040543 | 15..82 | 100 | -> | Plus |
2R | 7041569..7041730 | 83..244 | 100 | -> | Plus |
2R | 7041785..7042147 | 245..607 | 100 | -> | Plus |
2R | 7042580..7042669 | 608..697 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:44 Download gff for
BO07373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2927981..2928048 | 15..82 | 100 | -> | Plus |
arm_2R | 2929074..2929235 | 83..244 | 100 | -> | Plus |
arm_2R | 2929290..2929652 | 245..607 | 100 | -> | Plus |
arm_2R | 2930085..2930174 | 608..697 | 100 | | Plus |
BO07373.complete Sequence
715 bp (715 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630768
> BO07373.complete
GAAGTTATCAGTCGACATGGAGAAGTCGTTTCCCATAACACCCTGGAAGT
ACGGCCTACTGGTCACCTGCATTCTCATTGTGACGTGCAACGTGTTCTTC
TTCTCCTGTGGCGTGACCACCTGGGGTTCGGCCGTCTCCGTCTACGGCAG
CTATGGGTCGGCACTTTGCGGAGGAGCAGTTTTCGGAGTCGCCTTCCTGG
GCATGTACGTGGCCTTGAAGGTGTCGTACAAGTATTCCATATACTACCTA
ATTTGCAGTGGCCTGGTTATAGCCGCCCTGGGCTCCTACCTCTTCACCTT
CACGGCGATGCGGGAGCAGCTGATGGGCAGGTTCGAGGAGCGCATGCGCG
ACCTCTTCGAGCGAAAGACCCACAGCGACGACAAGATGCAGCCAGTGCAC
AGCCTCTTCGGCTGCTGCGGCATTGAGGGACCGCAGGACTACCTTCAGGA
GGAGCACGGCGCCCTGCCCAGCAGCTGCTGCTACGCCTTCGACTGCTCCA
AGCCGGCGCACGTCTACGAGGAGGGATGCTCCACCAAGGCGGTAGCTACT
CTGAGAATGCAGGCGGAGCTCAACTACTACAGCTGCATGGCGATCATTGC
CCTCGAGTTTTTGGGCTTGTTCACCGCTTACCATTTGGGCAAGGCTCGCA
AGTATGCCAAAACCAAGATAAAGGACGAGGAGACCCCCATCAACGACGCA
AGCTTTCTAGACCAT
BO07373.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ej-RA | 684 | CG12143-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ej-RA | 1116 | CG12143-RA | 341..1023 | 15..697 | 3415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7041785..7042147 | 245..607 | 1815 | 100 | Plus |
2R | 25286936 | 2R | 7041568..7041730 | 82..244 | 815 | 100 | Plus |
2R | 25286936 | 2R | 7042578..7042669 | 606..697 | 460 | 100 | Plus |
2R | 25286936 | 2R | 7040476..7040543 | 15..82 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:48:26 has no hits.
BO07373.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:40 Download gff for
BO07373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 1..684 | 17..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:53 Download gff for
BO07373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 338..1020 | 15..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:52 Download gff for
BO07373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 343..1023 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:41 Download gff for
BO07373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 338..1020 | 15..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:53 Download gff for
BO07373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ej-RA | 343..1023 | 17..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:53 Download gff for
BO07373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7040478..7040543 | 17..82 | 100 | -> | Plus |
2R | 7041569..7041730 | 83..244 | 100 | -> | Plus |
2R | 7041785..7042147 | 245..607 | 100 | -> | Plus |
2R | 7042580..7042669 | 608..699 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:52 Download gff for
BO07373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2927983..2928048 | 17..82 | 100 | -> | Plus |
arm_2R | 2929074..2929235 | 83..244 | 100 | -> | Plus |
arm_2R | 2929290..2929652 | 245..607 | 100 | -> | Plus |
arm_2R | 2930085..2930174 | 608..699 | 97 | | Plus |
BO07373.pep Sequence
Translation from 16 to 715
> BO07373.pep
MEKSFPITPWKYGLLVTCILIVTCNVFFFSCGVTTWGSAVSVYGSYGSAL
CGGAVFGVAFLGMYVALKVSYKYSIYYLICSGLVIAALGSYLFTFTAMRE
QLMGRFEERMRDLFERKTHSDDKMQPVHSLFGCCGIEGPQDYLQEEHGAL
PSSCCYAFDCSKPAHVYEEGCSTKAVATLRMQAELNYYSCMAIIALEFLG
LFTAYHLGKARKYAKTKIKDEETPINDASFLDH
BO07373.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ej-PA | 227 | CG12143-PA | 1..227 | 1..227 | 1217 | 100 | Plus |