Clone BO07373 Report

Search the DGRC for BO07373

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:73
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42Ej-RA
Protein status:BO07373.pep: validated full length
Sequenced Size:715

Clone Sequence Records

BO07373.3prime Sequence

713 bp (712 high quality bases) assembled on 2005-12-04

> BO07373.3prime
ATGGTCTAGAAAGCTTGCGTCGTTGATGGGGGTCTCCTCGTCCTTTATCT
TGGTTTTGGCATACTTGCGAGCCTTGCCCAAATGGTAAGCGGTGAACAAG
CCCAAAAACTCGAGGGCAATGATCGCCATGCAGCTGTAGTAGTTGAGCTC
CGCCTGCATTCTCAGAGTAGCTACCGCCTTGGTGGAGCATCCCTCCTCGT
AGACGTGCGCCGGCTTGGAGCAGTCGAAGGCGTAGCAGCAGCTGCTGGGC
AGGGCGCCGTGCTCCTCCTGAAGGTAGTCCTGCGGTCCCTCAATGCCGCA
GCAGCCGAAGAGGCTGTGCACTGGCTGCATCTTGTCGTCGCTGTGGGTCT
TTCGCTCGAAGAGGTCGCGCATGCGCTCCTCGAACCTGCCCATCAGCTGC
TCCCGCATCGCCGTGAAGGTGAAGAGGTAGGAGCCCAGGGCGGCTATAAC
CAGGCCACTGCAAATTAGGTAGTATATGGAATACTTGTACGACACCTTCA
AGGCCACGTACATGCCCAGGAAGGCGACTCCGAAAACTGCTCCTCCGCAA
AGTGCCGACCCATAGCTGCCGTAGACGGAGACGGCCGAACCCCAGGTGGT
CACGCCACAGGAGAAGAAGAACACGTTGCACGTCACAATGAGAATGCAGG
TGACCAGTAGGCCGTACTTCCAGGGTGTTATGGGAAACGACTTCTCCATG
TCGACTGATAACT

BO07373.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12143-PA 684 Tsp42Ej-RA 1..681 699..19 3405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ej-RA 1116 CG12143-RA 341..1023 701..19 3415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7041785..7042147 471..109 1815 100 Minus
2R 25286936 2R 7041568..7041730 634..472 815 100 Minus
2R 25286936 2R 7042578..7042669 110..19 460 100 Minus
2R 25286936 2R 7040476..7040543 701..634 340 100 Minus
Blast to na_te.dros performed on 2015-02-12 09:58:49 has no hits.

BO07373.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:50 Download gff for BO07373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12143-PA 1..684 16..699 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:21 Download gff for BO07373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12143-PA 1..684 16..699 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:43 Download gff for BO07373.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 341..1023 19..701 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:53 Download gff for BO07373.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 341..1023 19..701 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:53 Download gff for BO07373.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7042580..7042669 19..108 100   Minus
2R 7040476..7040543 634..701 100 -> Minus
2R 7041569..7041730 472..633 100 -> Minus
2R 7041785..7042147 109..471 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:43 Download gff for BO07373.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2930085..2930174 19..108 100   Minus
arm_2R 2927981..2928048 634..701 100 -> Minus
arm_2R 2929074..2929235 472..633 100 -> Minus
arm_2R 2929290..2929652 109..471 100 -> Minus

BO07373.5prime Sequence

713 bp (712 high quality bases) assembled on 2005-12-04

> BO07373.5prime
GAAGTTATCAGTCGACATGGAGAAGTCGTTTCCCATAACACCCTGGAAGT
ACGGCCTACTGGTCACCTGCATTCTCATTGTGACGTGCAACGTGTTCTTC
TTCTCCTGTGGCGTGACCACCTGGGGTTCGGCCGTCTCCGTCTACGGCAG
CTATGGGTCGGCACTTTGCGGAGGAGCAGTTTTCGGAGTCGCCTTCCTGG
GCATGTACGTGGCCTTGAAGGTGTCGTACAAGTATTCCATATACTACCTA
ATTTGCAGTGGCCTGGTTATAGCCGCCCTGGGCTCCTACCTCTTCACCTT
CACGGCGATGCGGGAGCAGCTGATGGGCAGGTTCGAGGAGCGCATGCGCG
ACCTCTTCGAGCGAAAGACCCACAGCGACGACAAGATGCAGCCAGTGCAC
AGCCTCTTCGGCTGCTGCGGCATTGAGGGACCGCAGGACTACCTTCAGGA
GGAGCACGGCGCCCTGCCCAGCAGCTGCTGCTACGCCTTCGACTGCTCCA
AGCCGGCGCACGTCTACGAGGAGGGATGCTCCACCAAGGCGGTAGCTACT
CTGAGAATGCAGGCGGAGCTCAACTACTACAGCTGCATGGCGATCATTGC
CCTCGAGTTTTTGGGCTTGTTCACCGCTTACCATTTGGGCAAGGCTCGCA
AGTATGCCAAAACCAAGATAAAGGACGAGGAGACCCCCATCAACGACGCA
AGCTTTCTAGACC

BO07373.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12143-PA 684 Tsp42Ej-RA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ej-RA 1116 CG12143-RA 341..1023 15..697 3415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7041785..7042147 245..607 1815 100 Plus
2R 25286936 2R 7041568..7041730 82..244 815 100 Plus
2R 25286936 2R 7042578..7042669 606..697 460 100 Plus
2R 25286936 2R 7040476..7040543 15..82 340 100 Plus
Blast to na_te.dros performed on 2015-02-12 09:58:51 has no hits.

BO07373.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:51 Download gff for BO07373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12143-PA 1..684 17..700 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:23 Download gff for BO07373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12143-PA 1..684 17..700 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:44 Download gff for BO07373.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 341..1023 15..697 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:56 Download gff for BO07373.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 341..1023 15..697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:56 Download gff for BO07373.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7040476..7040543 15..82 100 -> Plus
2R 7041569..7041730 83..244 100 -> Plus
2R 7041785..7042147 245..607 100 -> Plus
2R 7042580..7042669 608..697 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:44 Download gff for BO07373.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2927981..2928048 15..82 100 -> Plus
arm_2R 2929074..2929235 83..244 100 -> Plus
arm_2R 2929290..2929652 245..607 100 -> Plus
arm_2R 2930085..2930174 608..697 100   Plus

BO07373.complete Sequence

715 bp (715 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630768

> BO07373.complete
GAAGTTATCAGTCGACATGGAGAAGTCGTTTCCCATAACACCCTGGAAGT
ACGGCCTACTGGTCACCTGCATTCTCATTGTGACGTGCAACGTGTTCTTC
TTCTCCTGTGGCGTGACCACCTGGGGTTCGGCCGTCTCCGTCTACGGCAG
CTATGGGTCGGCACTTTGCGGAGGAGCAGTTTTCGGAGTCGCCTTCCTGG
GCATGTACGTGGCCTTGAAGGTGTCGTACAAGTATTCCATATACTACCTA
ATTTGCAGTGGCCTGGTTATAGCCGCCCTGGGCTCCTACCTCTTCACCTT
CACGGCGATGCGGGAGCAGCTGATGGGCAGGTTCGAGGAGCGCATGCGCG
ACCTCTTCGAGCGAAAGACCCACAGCGACGACAAGATGCAGCCAGTGCAC
AGCCTCTTCGGCTGCTGCGGCATTGAGGGACCGCAGGACTACCTTCAGGA
GGAGCACGGCGCCCTGCCCAGCAGCTGCTGCTACGCCTTCGACTGCTCCA
AGCCGGCGCACGTCTACGAGGAGGGATGCTCCACCAAGGCGGTAGCTACT
CTGAGAATGCAGGCGGAGCTCAACTACTACAGCTGCATGGCGATCATTGC
CCTCGAGTTTTTGGGCTTGTTCACCGCTTACCATTTGGGCAAGGCTCGCA
AGTATGCCAAAACCAAGATAAAGGACGAGGAGACCCCCATCAACGACGCA
AGCTTTCTAGACCAT

BO07373.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ej-RA 684 CG12143-PA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ej-RA 1116 CG12143-RA 341..1023 15..697 3415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7041785..7042147 245..607 1815 100 Plus
2R 25286936 2R 7041568..7041730 82..244 815 100 Plus
2R 25286936 2R 7042578..7042669 606..697 460 100 Plus
2R 25286936 2R 7040476..7040543 15..82 340 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:48:26 has no hits.

BO07373.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:15:40 Download gff for BO07373.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 1..684 17..700 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:53 Download gff for BO07373.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 338..1020 15..697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:52 Download gff for BO07373.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 343..1023 17..699 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:15:41 Download gff for BO07373.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 338..1020 15..697 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:53 Download gff for BO07373.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ej-RA 343..1023 17..699 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:53 Download gff for BO07373.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7040478..7040543 17..82 100 -> Plus
2R 7041569..7041730 83..244 100 -> Plus
2R 7041785..7042147 245..607 100 -> Plus
2R 7042580..7042669 608..699 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:52 Download gff for BO07373.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2927983..2928048 17..82 100 -> Plus
arm_2R 2929074..2929235 83..244 100 -> Plus
arm_2R 2929290..2929652 245..607 100 -> Plus
arm_2R 2930085..2930174 608..699 97   Plus

BO07373.pep Sequence

Translation from 16 to 715

> BO07373.pep
MEKSFPITPWKYGLLVTCILIVTCNVFFFSCGVTTWGSAVSVYGSYGSAL
CGGAVFGVAFLGMYVALKVSYKYSIYYLICSGLVIAALGSYLFTFTAMRE
QLMGRFEERMRDLFERKTHSDDKMQPVHSLFGCCGIEGPQDYLQEEHGAL
PSSCCYAFDCSKPAHVYEEGCSTKAVATLRMQAELNYYSCMAIIALEFLG
LFTAYHLGKARKYAKTKIKDEETPINDASFLDH

BO07373.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ej-PA 227 CG12143-PA 1..227 1..227 1217 100 Plus