Clone Sequence Records
BO07376.3prime Sequence
912 bp (835 high quality bases) assembled on 2005-12-04
> BO07376.3prime
ATGGTCTAGAAAGCTTGCATCGAAGGCCACCTTGCGTGTGAACGAGGTGA
GTGAGGAGATCTCGCTGGGATTGGAGTCCGATGGCAGGTGACTGAACTCG
ATCTCCTCGCTGGCTGCTGAGGCAACTATATTCTCATTCGACTGTGTGGT
CTCGTCACTGTGGTGCATTGTCGGCCATTGCTTGTGACTGGGCGCGTACA
GGATGAGCAGGGCGAAGATATAGATGTTCCACATGCCGTAGACGCCGGTC
AGGAAGGCGGAAGTTGGCTGAATTGCCACATTGTCGTTCCAGTCCCACTG
GCCCTCGGCCATTTGGCCCATAATGAAGCCGGCGACGGTCAGAGCTGCAC
ATACAAGGGTGGCCAGCATCAAAAACTTGAAGCGATAGATAAGACCTTTA
CTTTCATTTGCCTTATGCAATTGAAAAAAAAAAGCTTTTGTGTAAAAATA
TACGATTCCGGCCCAATCTTCAACTTTCTGGTCTAAAGGAACTTCATAAT
GGAGTCGTCGCGCCTGGGACATCGAAGGCAGCGAGGTGCGCTTGTCGCCA
ATATTCCTAAACACCTTCCATATCATGTAGCACAGAAAGAGGAAATAAAT
GGCTGCCGAAACTCCGGCCAGAACAATGAAAGTCATGGCCACCTTAGCGC
CCAGCGGCGTTGTCCAGATCGAGTAGAATGGATTGCGTAGCTGCACGCCC
CTTTCGCAGATGTCGAAGACGAACAGCGAGATGCAGCCCACGACGACGGC
CGAGAGATGTTTCCAGTAACGCGAGCGAATGGTCGACTTGTTCGGAGCAT
CCTGAATGAGCATGTGTTCACCGGCGAAGACCAGCCAGAAAGTGAGCAGC
ATGGCATAAAAGATGCCTTGGCGAATATCACTTAGCAGCAGCATGTACGG
CATCTCGTAGAC
BO07376.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6210-PA | 1785 | MRP-RA | 889..1782 | 912..19 | 4470 | 100 | Minus |
| CG6210-PB | 1689 | MRP-RB | 889..1309 | 912..492 | 2105 | 100 | Minus |
| CG6210-PB | 1689 | MRP-RB | 1307..1686 | 398..19 | 1900 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wls-RA | 2574 | CG6210-RA | 1069..1962 | 912..19 | 4470 | 100 | Minus |
| wls-RB | 2478 | CG6210-RB | 1069..1489 | 912..492 | 2105 | 100 | Minus |
| wls-RB | 2478 | CG6210-RB | 1487..1866 | 398..19 | 1900 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11168137..11168557 | 492..912 | 2105 | 100 | Plus |
| 3L | 28110227 | 3L | 11167232..11167610 | 19..397 | 1895 | 100 | Plus |
| 3L | 28110227 | 3L | 11167817..11167916 | 394..493 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 14:06:55 has no hits.
BO07376.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:56 Download gff for
BO07376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MRP-PA | 889..1785 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:31 Download gff for
BO07376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6210-PA | 889..1785 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:04:55 Download gff for
BO07376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 1069..1967 | 13..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:42 Download gff for
BO07376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 1069..1967 | 13..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:42 Download gff for
BO07376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11167227..11167608 | 13..395 | 99 | <- | Plus |
| 3L | 11167819..11167914 | 396..491 | 100 | <- | Plus |
| 3L | 11168137..11168557 | 492..912 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:04:55 Download gff for
BO07376.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11160327..11160708 | 13..395 | 99 | <- | Plus |
| arm_3L | 11160919..11161014 | 396..491 | 100 | <- | Plus |
| arm_3L | 11161237..11161657 | 492..912 | 100 | | Plus |
BO07376.5prime Sequence
936 bp (771 high quality bases) assembled on 2005-12-04
> BO07376.5prime
GAAGTTATCAGTCGACATGTCGGGCACCATACTGGAGAACCTGAGTGGCC
GCAAGCTGTCCATATTGGTGGCCACTTTGCTGCTCTGCCAGGTGTTGTGC
TTCCTGCTGGGCGGTCTGTATGCCCCCCTGCCCGCCGGCCATGTCACCGT
GCTGGGATCGCTGTGCCGCGAGGATCACGCCCGCCAGAATGACACCAGTT
TCCTGCTGTACTCACGCGGTGCAGGAGCCTGCATCCCAGTGACGCGAGAG
GAGGTGGAGCAGGATTCAACAAAGATGGCCAATGAGTTGGTGCACGTTTT
CCAGATGCCGCTGCCTCGTGACCTGCGCGACCTGGACTACTCCCGTTGGC
AGCAGAATCTGATCGGTGTGCTACAGGTGGAGTTCGGCTATGATTCCTCG
TCGGAGCTAAGGGAACCGCCCAGGGAACTTCAGTTGACAATCGACATGCG
TCTGGCGTACCGAAATAAGGGGGATCCGGACAACGGCTGGAAGTTGTACG
CCCACGGCGTCGAGCATCGCTACCTGGATTGTGTCACTTCTCATGTGGGT
CCCACAGAAACGCTGTACTCATGCGACATGATACCGCTTTTCGAATTGGG
CGCATTGCACCACAGCTTCTATCTGCTGAACTTGCGTTTCCCGCTGGACA
CACCGAGCCAAATGAACCTGCAGTTCGGCCATATGCACGATCTCACGCTG
ACAGCTATTCATCAGAACGGAGGATTCACACAGATTTGGCTGTTGCTTAA
GACAATGCTGTTTCCATTCGTAGTGGGCATCATGATATGGTTCTGGAGGC
GAGTGCATCTGCTGCAACGATCCCCCGCCCTGCTGGAGTATATGCTTATC
TATTTGGGAGCCGCTCTGACCTTCCTCAATCTACCGCTGGAGTACTTGTC
GCTGGTCTACGAGATGCCGTACATGCTGCTGCTAAG
BO07376.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6210-PA | 1785 | MRP-RA | 1..920 | 17..936 | 4600 | 100 | Plus |
| CG6210-PB | 1689 | MRP-RB | 1..920 | 17..936 | 4600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wls-RB | 2478 | CG6210-RB | 181..1100 | 17..936 | 4600 | 100 | Plus |
| wls-RA | 2574 | CG6210-RA | 181..1100 | 17..936 | 4600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11168526..11169445 | 936..17 | 4600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:14:29 has no hits.
BO07376.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:57 Download gff for
BO07376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MRP-PA | 1..920 | 17..936 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:32 Download gff for
BO07376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6210-PB | 1..920 | 17..936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:14 Download gff for
BO07376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 173..1100 | 9..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:55 Download gff for
BO07376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 173..1100 | 9..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:55 Download gff for
BO07376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11168526..11169453 | 9..936 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:14 Download gff for
BO07376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11161626..11162553 | 9..936 | 99 | | Minus |
BO07376.complete Sequence
1816 bp (1816 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630769
> BO07376.complete
GAAGTTATCAGTCGACATGTCGGGCACCATACTGGAGAACCTGAGTGGCC
GCAAGCTGTCCATATTGGTGGCCACTTTGCTGCTCTGCCAGGTGTTGTGC
TTCCTGCTGGGCGGTCTGTATGCCCCCCTGCCCGCCGGCCATGTCACCGT
GCTGGGATCGCTGTGCCGCGAGGATCACGCCCGCCAGAATGACACCAGTT
TCCTGCTGTACTCACGCGGTGCAGGAGCCTGCATCCCAGTGACGCGAGAG
GAGGTGGAGCAGGATTCAACAAAGATGGCCAATGAGTTGGTGCACGTTTT
CCAGATGCCGCTGCCTCGTGACCTGCGCGACCTGGACTACTCCCGTTGGC
AGCAGAATCTGATCGGTGTGCTACAGGTGGAGTTCGGCTATGATTCCTCG
TCGGAGCTAAGGGAACCGCCCAGGGAACTTCAGTTGACAATCGACATGCG
TCTGGCGTACCGAAATAAGGGGGATCCGGACAACGGCTGGAAGTTGTACG
CCCACGGCGTCGAGCATCGCTACCTGGATTGTGTCACTTCTCATGTGGGT
CCCACAGAAACGCTGTACTCATGCGACATGATACCGCTTTTCGAATTGGG
CGCATTGCACCACAGCTTCTATCTGCTGAACTTGCGTTTCCCGCTGGACA
CACCGAGCCAAATGAACCTGCAGTTCGGCCATATGCACGATCTCACGCTG
ACAGCTATTCATCAGAACGGAGGATTCACACAGATTTGGCTGTTGCTTAA
GACAATGCTGTTTCCATTCGTAGTGGGCATCATGATATGGTTCTGGAGGC
GAGTGCATCTGCTGCAACGATCCCCCGCCCTGCTGGAGTATATGCTTATC
TATTTGGGAGCCGCTCTGACCTTCCTCAATCTACCGCTGGAGTACTTGTC
GCTGGTCTACGAGATGCCGTACATGCTGCTGCTAAGTGATATTCGCCAAG
GCATCTTTTATGCCATGCTGCTCACTTTCTGGCTGGTCTTCGCCGGTGAA
CACATGCTCATTCAGGATGCTCCGAACAAGTCGACCATTCGCTCGCGTTA
CTGGAAACATCTCTCGGCCGTCGTCGTGGGCTGCATCTCGCTGTTCGTCT
TCGACATCTGCGAAAGGGGCGTGCAGCTACGCAATCCATTCTACTCGATC
TGGACAACGCCGCTGGGCGCTAAGGTGGCCATGACTTTCATTGTTCTGGC
CGGAGTTTCGGCAGCCATTTATTTCCTCTTTCTGTGCTACATGATATGGA
AGGTGTTTAGGAATATTGGCGACAAGCGCACCTCGCTGCCTTCGATGTCC
CAGGCGCGACGACTCCATTATGAAGTTCCTTTAGACCAGAAAGTTGAAGA
TTGGGCCGGAATCGTATATTTTTACACAAAAGCTTTTTTTTTTCAATTGC
ATAAGGCAAATGAAAGTAAAGGTCTTATCTATCGCTTCAAGTTTTTGATG
CTGGCCACCCTTGTATGTGCAGCTCTGACCGTCGCCGGCTTCATTATGGG
CCAAATGGCCGAGGGCCAGTGGGACTGGAACGACAATGTGGCAATTCAGC
CAACTTCCGCCTTCCTGACCGGCGTCTACGGCATGTGGAACATCTATATC
TTCGCCCTGCTCATCCTGTACGCGCCCAGTCACAAGCAATGGCCGACAAT
GCACCACAGTGACGAGACCACACAGTCGAATGAGAATATAGTTGCCTCAG
CAGCCAGCGAGGAGATCGAGTTCAGTCACCTGCCATCGGACTCCAATCCC
AGCGAGATCTCCTCACTCACCTCGTTCACACGCAAGGTGGCCTTCGATGC
AAGCTTTCTAGACCAT
BO07376.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wls-RA | 1785 | CG6210-PA | 1..1782 | 17..1798 | 8910 | 100 | Plus |
| wls-RB | 1689 | CG6210-PB | 1..1309 | 17..1325 | 6545 | 100 | Plus |
| wls-RB | 1689 | CG6210-PB | 1307..1686 | 1419..1798 | 1900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wls-RA | 2574 | CG6210-RA | 181..1962 | 17..1798 | 8910 | 100 | Plus |
| wls-RB | 2478 | CG6210-RB | 181..1489 | 17..1325 | 6545 | 100 | Plus |
| wls-RB | 2478 | CG6210-RB | 1487..1866 | 1419..1798 | 1900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11168137..11169445 | 1325..17 | 6545 | 100 | Minus |
| 3L | 28110227 | 3L | 11167232..11167610 | 1798..1420 | 1895 | 100 | Minus |
| 3L | 28110227 | 3L | 11167817..11167916 | 1423..1324 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:11:38 has no hits.
BO07376.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:18 Download gff for
BO07376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 1..1785 | 17..1799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:21 Download gff for
BO07376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 189..1983 | 9..1804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:05:54 Download gff for
BO07376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 181..1962 | 17..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:19 Download gff for
BO07376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 189..1983 | 9..1804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:55 Download gff for
BO07376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wls-RA | 181..1962 | 17..1800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:55 Download gff for
BO07376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11168137..11169445 | 17..1325 | 100 | | Minus |
| 3L | 11167230..11167608 | 1422..1800 | 99 | <- | Minus |
| 3L | 11167819..11167914 | 1326..1421 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:05:54 Download gff for
BO07376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11160330..11160708 | 1422..1800 | 99 | <- | Minus |
| arm_3L | 11160919..11161014 | 1326..1421 | 100 | <- | Minus |
| arm_3L | 11161237..11162545 | 17..1325 | 100 | | Minus |
BO07376.pep Sequence
Translation from 16 to 1816
> BO07376.pep
MSGTILENLSGRKLSILVATLLLCQVLCFLLGGLYAPLPAGHVTVLGSLC
REDHARQNDTSFLLYSRGAGACIPVTREEVEQDSTKMANELVHVFQMPLP
RDLRDLDYSRWQQNLIGVLQVEFGYDSSSELREPPRELQLTIDMRLAYRN
KGDPDNGWKLYAHGVEHRYLDCVTSHVGPTETLYSCDMIPLFELGALHHS
FYLLNLRFPLDTPSQMNLQFGHMHDLTLTAIHQNGGFTQIWLLLKTMLFP
FVVGIMIWFWRRVHLLQRSPALLEYMLIYLGAALTFLNLPLEYLSLVYEM
PYMLLLSDIRQGIFYAMLLTFWLVFAGEHMLIQDAPNKSTIRSRYWKHLS
AVVVGCISLFVFDICERGVQLRNPFYSIWTTPLGAKVAMTFIVLAGVSAA
IYFLFLCYMIWKVFRNIGDKRTSLPSMSQARRLHYEVPLDQKVEDWAGIV
YFYTKAFFFQLHKANESKGLIYRFKFLMLATLVCAALTVAGFIMGQMAEG
QWDWNDNVAIQPTSAFLTGVYGMWNIYIFALLILYAPSHKQWPTMHHSDE
TTQSNENIVASAASEEIEFSHLPSDSNPSEISSLTSFTRKVAFDASFLDH
BO07376.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wls-PA | 594 | CG6210-PA | 1..594 | 1..594 | 3139 | 100 | Plus |
| wls-PB | 562 | CG6210-PB | 1..562 | 1..594 | 2923 | 94.6 | Plus |
