Clone Sequence Records
BO07377.3prime Sequence
922 bp (758 high quality bases) assembled on 2005-12-04
> BO07377.3prime
ATGGTCTAGAAAGCTTGCCGGATTCCCTATAATATTGAGGCCGGCGCAGT
GCATCTTCTCGGTGGGCATGGCCTGCACGAAGTACTCGCGGTTGTCCAGC
GACATGTGGCACAGCGGCTTCTTCTTCTGCGACATTTCGTCGTCCTTGTT
CTTCAGGTCCTCCAGCAGCTTGGGGAACCAGGTCAGCTCGCAGGAGCAGT
TCAGCGGGTTATCGGTGATATCGATGATGCGAAGGGTGTCGATGACGGGC
TCCATTATGTCCTGCGGAATGCGCTGCAACTTGTTGTTCTGCAGGTTCAG
CGTTTCCAGCGAGTTGAGGTTCTCAAACAGAAGACTGGGCAGAACCTTGA
TGTCGTTCTTCTGCAGGTTGAGGAAAGTCAGGGAATCTCCAAAGCCAGTG
AAGGCATCTTCAGCCAAAACATTGATATTGTTGTTGCGCAAGTCCAAGTG
GCGAAGGCGGTGCAGCGGACGCAGTGCCTCGCTGGGAATAGTGTGGATCT
GGTTATCACCCAGGCGCAGATATTGCAGGTTCTCCTCTAGGCCCTTGAAG
GCATCCTTGTCAATCACACTGATCTTATTGCCCTCCAGCTCCAAGGAGTT
TAGCAGGGTGAGGTGACTAAACACATTGGCAGGCACGGTGGTGATCATGT
TGTGGGCCAAAATCAATGAGTCCAGGCTCTGCAAGCCTTCGAAATCGCCT
TCGCTGATAGTTCGTATCTTGTTCTCCTGAATCTCCAGTTTCTTTAAGGT
GCTCAAAATGGAAAGAGCTTTCTGCGGGATATTGGTAAGATCGTTGCCAC
CCAAATTCAGGCGCTTAATATGGTCCTCAAGTCCTCGGAAAGCCTCGGGA
TCGATCTGTGTAATCTTGTTCTCGTAGAGCGTCAGAATCTCCAGGGTCTC
CAGTCCCTCGAAAGCATTGTTG
BO07377.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-PA | 1413 | CG14762-RA | 507..1410 | 922..19 | 4495 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-RA | 3658 | CG14762-RA | 1343..2246 | 922..19 | 4505 | 99.9 | Minus |
| CG14762-RB | 3801 | CG14762-RB | 1343..2231 | 922..34 | 4430 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8011401..8011582 | 353..534 | 910 | 100 | Plus |
| 2R | 25286936 | 2R | 8010914..8011093 | 34..213 | 900 | 100 | Plus |
| 2R | 25286936 | 2R | 8011643..8011797 | 534..688 | 775 | 100 | Plus |
| 2R | 25286936 | 2R | 8011172..8011311 | 213..352 | 700 | 100 | Plus |
| 2R | 25286936 | 2R | 8011865..8012002 | 686..823 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 8012060..8012158 | 824..922 | 480 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:09:23 has no hits.
BO07377.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:58 Download gff for
BO07377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-PA | 507..1413 | 16..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:33 Download gff for
BO07377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-PA | 507..1413 | 16..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:25:17 Download gff for
BO07377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 1343..2252 | 11..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:46 Download gff for
BO07377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 1343..2252 | 11..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:46 Download gff for
BO07377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8011643..8011795 | 534..686 | 100 | <- | Plus |
| 2R | 8011866..8012002 | 687..823 | 100 | <- | Plus |
| 2R | 8012060..8012158 | 824..922 | 98 | | Plus |
| 2R | 8010914..8011092 | 34..212 | 100 | <- | Plus |
| 2R | 8011172..8011311 | 213..352 | 100 | <- | Plus |
| 2R | 8011401..8011581 | 353..533 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:25:17 Download gff for
BO07377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3899565..3899663 | 824..922 | 98 | | Plus |
| arm_2R | 3898419..3898597 | 34..212 | 100 | <- | Plus |
| arm_2R | 3898677..3898816 | 213..352 | 100 | <- | Plus |
| arm_2R | 3898906..3899086 | 353..533 | 100 | <- | Plus |
| arm_2R | 3899148..3899300 | 534..686 | 100 | <- | Plus |
| arm_2R | 3899371..3899507 | 687..823 | 100 | <- | Plus |
BO07377.5prime Sequence
905 bp (882 high quality bases) assembled on 2005-12-04
> BO07377.5prime
GAAGTTATCAGTCGACATGGCGGGAATTCAGCTGCAATCGGGATGCACGA
TGGTCGTGACGGTGGTGCTCCTGCTGCAGGTGCTTGTGATGGACCAGGTG
CTCGGCCAGGGTCCACCGCAGACTCAAGTGTGTCCGGAGCAGAGCGAGAT
CGCGCCCTGCATCTGCACGGTGAAGAAGAACGGGCTGGACATCCTGTGCG
AGACCACCGATCTGGCGCACATCACCAAGTCGATGGGCACGCTGAAGGGC
AAGAGTCCCATCATCTTCTACCTGAAGCTTCGCCACAACAATCTGCCCAA
GCTGCAGGGCTTCGTCTTCCTGGCCCTTGACATCCGTCACCTGACCATCC
ACAACAGCAGCCTGGCGGCCATCGAGGAGAACGCCCTCAGCTCGCTGGGA
GCGGGACTGACGCAGCTGGATGTGTCCCTCAACCAAATGAAGACGGTGCC
CTCGCAGGCTCTGCAACATCTGTTCCACCTGTTGATCCTTAATCTGAACC
ACAATAAAATCACCGTGATCCACAACAATGCCTTCGAGGGACTGGAGACC
CTGGAGATTCTGACGCTCTACGAGAACAAGATTACACAGATCGATCCCGA
GGCTTTCCGAGGACTTGAGGACCATATTAAGCGCCTGAATTTGGGTGGCA
ACGATCTTACCAATATCCCGCAGAAAGCTCTTTCCATTTTGAGCACCTTA
AAGAAACTGGAGATTCAGGAGAACAAGATACGAACTATCAGCGAAGGCGA
TTTCGAAGGCTTGCAGAGCCTGGACTCATTGATTTTGGCCCACACATGAT
CACCACCGTGCCCTGCCATGTGTTTAGTCACCTCACCCTGCTAAACTCCT
TGGAGCTGGAGGGCAATAAGATCAGTGTGATTGACAAGGATGCCTTTCAG
GGCCT
BO07377.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-PA | 1413 | CG14762-RA | 1..778 | 17..794 | 3890 | 100 | Plus |
| CG14762-PA | 1413 | CG14762-RA | 803..881 | 818..896 | 395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-RB | 3801 | CG14762-RB | 836..1726 | 16..905 | 4355 | 99.4 | Plus |
| CG14762-RA | 3658 | CG14762-RA | 836..1726 | 16..905 | 4355 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8012346..8012729 | 399..16 | 1920 | 100 | Minus |
| 2R | 25286936 | 2R | 8012060..8012283 | 621..398 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 8011865..8012002 | 759..622 | 690 | 100 | Minus |
| 2R | 25286936 | 2R | 8011648..8011797 | 905..757 | 610 | 95.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:12:35 has no hits.
BO07377.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:16:58 Download gff for
BO07377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-PA | 1..890 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:34 Download gff for
BO07377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-PA | 1..890 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:06:17 Download gff for
BO07377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 832..1726 | 8..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:16 Download gff for
BO07377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 832..1726 | 8..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:16 Download gff for
BO07377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8012060..8012282 | 399..621 | 100 | <- | Minus |
| 2R | 8011648..8011795 | 759..905 | 96 | <- | Minus |
| 2R | 8011866..8012002 | 622..758 | 100 | <- | Minus |
| 2R | 8012347..8012733 | 8..398 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:06:17 Download gff for
BO07377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3899153..3899300 | 759..905 | 96 | <- | Minus |
| arm_2R | 3899371..3899507 | 622..758 | 100 | <- | Minus |
| arm_2R | 3899565..3899787 | 399..621 | 100 | <- | Minus |
| arm_2R | 3899852..3900238 | 8..398 | 98 | | Minus |
BO07377.complete Sequence
1444 bp (1444 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630770
> BO07377.complete
GAAGTTATCAGTCGACATGGCGGGAATTCAGCTGCAATCGGGATGCACGA
TGGTCGTGACGGTGGTGCTCCTGCTGCAGGTGCTTGTGATGGACCAGGTG
CTCGGCCAGGGTCCACCGCAGACTCAAGTGTGTCCGGAGCAGAGCGAGAT
CGCGCCCTGCATCTGCACGGTGAAGAAGAACGGGCTGGACATCCTGTGCG
AGACCACCGATCTGGCGCACATCACCAAGTCGATGGGCACGCTGAAGGGC
AAGAGTCCCATCATCTTCTACCTGAAGCTTCGCCACAACAATCTGCCCAA
GCTGCAGGGCTTCGTCTTCCTGGCCCTTGACATCCGTCACCTGACCATCC
ACAACAGCAGCCTGGCGGCCATCGAGGAGAACGCCCTCAGCTCGCTGGGA
GCGGGACTGACGCAGCTGGATGTGTCCCTCAACCAAATGAAGACGGTGCC
CTCGCAGGCTCTGCAACATCTGTTCCACCTGTTGATCCTTAATCTGAACC
ACAATAAAATCACCGTGATCCACAACAATGCCTTCGAGGGACTGGAGACC
CTGGAGATTCTGACGCTCTACGAGAACAAGATTACACAGATCGATCCCGA
GGCTTTCCGAGGACTTGAGGACCATATTAAGCGCCTGAATTTGGGTGGCA
ACGATCTTACCAATATCCCGCAGAAAGCTCTTTCCATTTTGAGCACCTTA
AAGAAACTGGAGATTCAGGAGAACAAGATACGAACTATCAGCGAAGGCGA
TTTCGAAGGCTTGCAGAGCCTGGACTCATTGATTTTGGCCCACAACATGA
TCACCACCGTGCCTGCCAATGTGTTTAGTCACCTCACCCTGCTAAACTCC
TTGGAGCTGGAGGGCAATAAGATCAGTGTGATTGACAAGGATGCCTTCAA
GGGCCTAGAGGAGAACCTGCAATATCTGCGCCTGGGTGATAACCAGATCC
ACACTATTCCCAGCGAGGCACTGCGTCCGCTGCACCGCCTTCGCCACTTG
GACTTGCGCAACAACAATATCAATGTTTTGGCTGAAGATGCCTTCACTGG
CTTTGGAGATTCCCTGACTTTCCTCAACCTGCAGAAGAACGACATCAAGG
TTCTGCCCAGTCTTCTGTTTGAGAACCTCAACTCGCTGGAAACGCTGAAC
CTGCAGAACAACAAGTTGCAGCGCATTCCGCAGGACATAATGGAGCCCGT
CATCGACACCCTTCGCATCATCGATATCACCGATAACCCGCTGAACTGCT
CCTGCGAGCTGACCTGGTTCCCCAAGCTGCTGGAGGACCTGAAGAACAAG
GACGACGAAATGTCGCAGAAGAAGAAGCCGCTGTGCCACATGTCGCTGGA
CAACCGCGAGTACTTCGTGCAGGCCATGCCCACCGAGAAGATGCACTGCG
CCGGCCTCAATATTATAGGGAATCCGGCAAGCTTTCTAGACCAT
BO07377.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-RA | 1413 | CG14762-PA | 1..1410 | 17..1426 | 7050 | 100 | Plus |
| CG14762-RB | 1497 | CG14762-PB | 1..1395 | 17..1411 | 6975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-RA | 3658 | CG14762-RA | 836..2246 | 16..1426 | 7055 | 100 | Plus |
| CG14762-RB | 3801 | CG14762-RB | 836..2231 | 16..1411 | 6980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8012346..8012729 | 399..16 | 1920 | 100 | Minus |
| 2R | 25286936 | 2R | 8012060..8012283 | 621..398 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 8011401..8011582 | 1092..911 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 8010914..8011093 | 1411..1232 | 900 | 100 | Minus |
| 2R | 25286936 | 2R | 8011643..8011797 | 911..757 | 775 | 100 | Minus |
| 2R | 25286936 | 2R | 8011172..8011311 | 1232..1093 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 8011865..8012002 | 759..622 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:07 has no hits.
BO07377.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:45 Download gff for
BO07377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 1..1413 | 17..1429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:48 Download gff for
BO07377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 831..2251 | 8..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:04 Download gff for
BO07377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 837..2246 | 17..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:45 Download gff for
BO07377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 831..2251 | 8..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:34 Download gff for
BO07377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 837..2246 | 17..1428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:34 Download gff for
BO07377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8012060..8012282 | 399..621 | 100 | <- | Minus |
| 2R | 8012347..8012728 | 17..398 | 100 | | Minus |
| 2R | 8010914..8011092 | 1233..1411 | 100 | <- | Minus |
| 2R | 8011172..8011311 | 1093..1232 | 100 | <- | Minus |
| 2R | 8011401..8011581 | 912..1092 | 100 | <- | Minus |
| 2R | 8011643..8011795 | 759..911 | 100 | <- | Minus |
| 2R | 8011866..8012002 | 622..758 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:04 Download gff for
BO07377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3898419..3898597 | 1233..1411 | 100 | <- | Minus |
| arm_2R | 3898677..3898816 | 1093..1232 | 100 | <- | Minus |
| arm_2R | 3898906..3899086 | 912..1092 | 100 | <- | Minus |
| arm_2R | 3899148..3899300 | 759..911 | 100 | <- | Minus |
| arm_2R | 3899371..3899507 | 622..758 | 100 | <- | Minus |
| arm_2R | 3899565..3899787 | 399..621 | 100 | <- | Minus |
| arm_2R | 3899852..3900233 | 17..398 | 100 | | Minus |
BO07377.pep Sequence
Translation from 16 to 1444
> BO07377.pep
MAGIQLQSGCTMVVTVVLLLQVLVMDQVLGQGPPQTQVCPEQSEIAPCIC
TVKKNGLDILCETTDLAHITKSMGTLKGKSPIIFYLKLRHNNLPKLQGFV
FLALDIRHLTIHNSSLAAIEENALSSLGAGLTQLDVSLNQMKTVPSQALQ
HLFHLLILNLNHNKITVIHNNAFEGLETLEILTLYENKITQIDPEAFRGL
EDHIKRLNLGGNDLTNIPQKALSILSTLKKLEIQENKIRTISEGDFEGLQ
SLDSLILAHNMITTVPANVFSHLTLLNSLELEGNKISVIDKDAFKGLEEN
LQYLRLGDNQIHTIPSEALRPLHRLRHLDLRNNNINVLAEDAFTGFGDSL
TFLNLQKNDIKVLPSLLFENLNSLETLNLQNNKLQRIPQDIMEPVIDTLR
IIDITDNPLNCSCELTWFPKLLEDLKNKDDEMSQKKKPLCHMSLDNREYF
VQAMPTEKMHCAGLNIIGNPASFLDH
BO07377.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-PA | 470 | CG14762-PA | 1..470 | 1..470 | 2407 | 100 | Plus |
| CG14762-PB | 498 | CG14762-PB | 1..472 | 1..472 | 2391 | 98.9 | Plus |
| caps-PB | 540 | CG11282-PB | 74..410 | 106..422 | 388 | 32.1 | Plus |
| caps-PA | 540 | CG11282-PA | 74..410 | 106..422 | 388 | 32.1 | Plus |
| caps-PD | 780 | CG11282-PD | 74..410 | 106..422 | 388 | 32.1 | Plus |
| caps-PB | 540 | CG11282-PB | 172..414 | 86..333 | 179 | 27.9 | Plus |
| caps-PA | 540 | CG11282-PA | 172..414 | 86..333 | 179 | 27.9 | Plus |
