Clone BO07387 Report

Search the DGRC for BO07387

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:73
Well:87
Vector:pDNR-Dual
Associated Gene/Transcripthug-RA
Protein status:BO07387.pep: validated full length
Sequenced Size:607

Clone Sequence Records

BO07387.3prime Sequence

605 bp (604 high quality bases) assembled on 2005-12-04

> BO07387.3prime
ATGGTCTAGAAAGCTTGCATCGCCACCGCACACTTGAGCACGTTTGCCCA
GGCGTGGCTTGAACGGCACCGATTTCTTAACCATGCGCTGCATGAACTGC
CCGCCGATGGCCTCCTCGCCGCCCGCCATTCCCGTCGCCCCCTCCGCGTC
CAGTAGTCGCCAGGAGTCAATGCTGCGGCCAAGGCGTGGCGTCCGCACGC
GATAAGCGGGCTCCCCATTACTCTGCAGCTGTCGTAGCTTTTGAAGGAGC
AGGTAATAGGTCAGTGGCGGCATGGTGTCCAAATCGAATTCCTGGCCCTG
CGGCGGCATGGCAGCCACCTGCATGGTGGCACTGGCCTTCTGGGCCAGGC
TATTCTCCTCCAGCTCGTCAATGATGTCTGTCAGCTCTTTGTAGTCGCCC
ATGGCGCGCTTTTGACGTGCCTCGCTCAACGCTGGTGAAGCTGGTGATAA
TGATCCTCTGGCAGAGCCGGCGCTGATGTGATTTCCCAAATCCAGTTTGC
TCGTGCCCTGCAAGGACTTCGCATGACTGCAAACAAGGATGTAGCAGGAA
GCCGCGATTAGCAGCAGTGTGCAATAACTAGGACCACACATGTCGACTGA
TAACT

BO07387.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6371-PA 576 hug-RA 1..573 591..19 2865 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Hug-RA 1033 CG6371-RA 169..741 591..19 2865 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12527746..12528030 512..228 1425 100 Minus
3R 32079331 3R 12528576..12528784 227..19 1045 100 Minus
3R 32079331 3R 12526356..12526440 591..507 425 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:34:04 has no hits.

BO07387.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:10 Download gff for BO07387.3prime
Subject Subject Range Query Range Percent Splice Strand
hug-PA 1..576 16..591 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:48 Download gff for BO07387.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6371-PA 1..576 16..591 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:04 Download gff for BO07387.3prime
Subject Subject Range Query Range Percent Splice Strand
hug-RA 164..741 19..599 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:14 Download gff for BO07387.3prime
Subject Subject Range Query Range Percent Splice Strand
Hug-RA 164..741 19..599 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:14 Download gff for BO07387.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12526351..12526439 508..599 95 -> Minus
3R 12527751..12528030 228..507 100 -> Minus
3R 12528576..12528784 19..227 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:04 Download gff for BO07387.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8354298..8354506 19..227 100   Minus
arm_3R 8352073..8352161 508..599 95 -> Minus
arm_3R 8353473..8353752 228..507 100 -> Minus

BO07387.5prime Sequence

605 bp (604 high quality bases) assembled on 2005-12-04

> BO07387.5prime
GAAGTTATCAGTCGACATGTGTGGTCCTAGTTATTGCACACTGCTGCTAA
TCGCGGCTTCCTGCTACATCCTTGTTTGCAGTCATGCGAAGTCCTTGCAG
GGCACGAGCAAACTGGATTTGGGAAATCACATCAGCGCCGGCTCTGCCAG
AGGATCATTATCACCAGCTTCACCAGCGTTGAGCGAGGCACGTCAAAAGC
GCGCCATGGGCGACTACAAAGAGCTGACAGACATCATTGACGAGCTGGAG
GAGAATAGCCTGGCCCAGAAGGCCAGTGCCACCATGCAGGTGGCTGCCAT
GCCGCCGCAGGGCCAGGAATTCGATTTGGACACCATGCCGCCACTGACCT
ATTACCTGCTCCTTCAAAAGCTACGACAGCTGCAGAGTAATGGGGAGCCC
GCTTATCGCGTGCGGACGCCACGCCTTGGCCGCAGCATTGACTCCTGGCG
ACTACTGGACGCGGAGGGGGCGACGGGAATGGCGGGCGGCGAGGAGGCCA
TCGGCGGGCAGTTCATGCAGCGCATGGTTAAGAAATCGGTGCCGTTCAAG
CCACGCCTGGGCAAACGTGCTCAAGTGTGCGGTGGCGATGCAAGCTTTCT
AGACC

BO07387.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6371-PA 576 hug-RA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Hug-RA 1033 CG6371-RA 169..741 17..589 2865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12527746..12528030 96..380 1425 100 Plus
3R 32079331 3R 12528576..12528784 381..589 1045 100 Plus
3R 32079331 3R 12526356..12526440 17..101 425 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:38:37 has no hits.

BO07387.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:11 Download gff for BO07387.5prime
Subject Subject Range Query Range Percent Splice Strand
hug-PA 1..576 17..592 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:49 Download gff for BO07387.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6371-PA 1..576 17..592 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:55:42 Download gff for BO07387.5prime
Subject Subject Range Query Range Percent Splice Strand
hug-RA 164..741 9..589 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:11 Download gff for BO07387.5prime
Subject Subject Range Query Range Percent Splice Strand
Hug-RA 164..741 9..589 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:11 Download gff for BO07387.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12526351..12526439 9..100 95 -> Plus
3R 12527751..12528030 101..380 100 -> Plus
3R 12528576..12528784 381..589 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:55:42 Download gff for BO07387.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8352073..8352161 9..100 95 -> Plus
arm_3R 8353473..8353752 101..380 100 -> Plus
arm_3R 8354298..8354506 381..589 100   Plus

BO07387.complete Sequence

607 bp (607 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630771

> BO07387.complete
GAAGTTATCAGTCGACATGTGTGGTCCTAGTTATTGCACACTGCTGCTAA
TCGCGGCTTCCTGCTACATCCTTGTTTGCAGTCATGCGAAGTCCTTGCAG
GGCACGAGCAAACTGGATTTGGGAAATCACATCAGCGCCGGCTCTGCCAG
AGGATCATTATCACCAGCTTCACCAGCGTTGAGCGAGGCACGTCAAAAGC
GCGCCATGGGCGACTACAAAGAGCTGACAGACATCATTGACGAGCTGGAG
GAGAATAGCCTGGCCCAGAAGGCCAGTGCCACCATGCAGGTGGCTGCCAT
GCCGCCGCAGGGCCAGGAATTCGATTTGGACACCATGCCGCCACTGACCT
ATTACCTGCTCCTTCAAAAGCTACGACAGCTGCAGAGTAATGGGGAGCCC
GCTTATCGCGTGCGGACGCCACGCCTTGGCCGCAGCATTGACTCCTGGCG
ACTACTGGACGCGGAGGGGGCGACGGGAATGGCGGGCGGCGAGGAGGCCA
TCGGCGGGCAGTTCATGCAGCGCATGGTTAAGAAATCGGTGCCGTTCAAG
CCACGCCTGGGCAAACGTGCTCAAGTGTGCGGTGGCGATGCAAGCTTTCT
AGACCAT

BO07387.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Hug-RA 576 CG6371-PA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Hug-RA 1033 CG6371-RA 169..741 17..589 2865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12527746..12528030 96..380 1425 100 Plus
3R 32079331 3R 12528576..12528784 381..589 1045 100 Plus
3R 32079331 3R 12526356..12526440 17..101 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:51:42 has no hits.

BO07387.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:46 Download gff for BO07387.complete
Subject Subject Range Query Range Percent Splice Strand
hug-RA 1..576 17..592 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:57 Download gff for BO07387.complete
Subject Subject Range Query Range Percent Splice Strand
hug-RA 164..741 9..589 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:09 Download gff for BO07387.complete
Subject Subject Range Query Range Percent Splice Strand
hug-RA 169..741 17..591 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:46 Download gff for BO07387.complete
Subject Subject Range Query Range Percent Splice Strand
hug-RA 164..741 9..589 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:21 Download gff for BO07387.complete
Subject Subject Range Query Range Percent Splice Strand
Hug-RA 169..741 17..591 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:21 Download gff for BO07387.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12526356..12526439 17..100 100 -> Plus
3R 12527751..12528030 101..380 100 -> Plus
3R 12528576..12528784 381..591 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:09 Download gff for BO07387.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8354298..8354506 381..591 99   Plus
arm_3R 8352078..8352161 17..100 100 -> Plus
arm_3R 8353473..8353752 101..380 100 -> Plus

BO07387.pep Sequence

Translation from 16 to 607

> BO07387.pep
MCGPSYCTLLLIAASCYILVCSHAKSLQGTSKLDLGNHISAGSARGSLSP
ASPALSEARQKRAMGDYKELTDIIDELEENSLAQKASATMQVAAMPPQGQ
EFDLDTMPPLTYYLLLQKLRQLQSNGEPAYRVRTPRLGRSIDSWRLLDAE
GATGMAGGEEAIGGQFMQRMVKKSVPFKPRLGKRAQVCGGDASFLDH

BO07387.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
Hug-PA 191 CG6371-PA 1..191 1..191 981 100 Plus