Clone Sequence Records
BO07387.3prime Sequence
605 bp (604 high quality bases) assembled on 2005-12-04
> BO07387.3prime
ATGGTCTAGAAAGCTTGCATCGCCACCGCACACTTGAGCACGTTTGCCCA
GGCGTGGCTTGAACGGCACCGATTTCTTAACCATGCGCTGCATGAACTGC
CCGCCGATGGCCTCCTCGCCGCCCGCCATTCCCGTCGCCCCCTCCGCGTC
CAGTAGTCGCCAGGAGTCAATGCTGCGGCCAAGGCGTGGCGTCCGCACGC
GATAAGCGGGCTCCCCATTACTCTGCAGCTGTCGTAGCTTTTGAAGGAGC
AGGTAATAGGTCAGTGGCGGCATGGTGTCCAAATCGAATTCCTGGCCCTG
CGGCGGCATGGCAGCCACCTGCATGGTGGCACTGGCCTTCTGGGCCAGGC
TATTCTCCTCCAGCTCGTCAATGATGTCTGTCAGCTCTTTGTAGTCGCCC
ATGGCGCGCTTTTGACGTGCCTCGCTCAACGCTGGTGAAGCTGGTGATAA
TGATCCTCTGGCAGAGCCGGCGCTGATGTGATTTCCCAAATCCAGTTTGC
TCGTGCCCTGCAAGGACTTCGCATGACTGCAAACAAGGATGTAGCAGGAA
GCCGCGATTAGCAGCAGTGTGCAATAACTAGGACCACACATGTCGACTGA
TAACT
BO07387.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6371-PA | 576 | hug-RA | 1..573 | 591..19 | 2865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hug-RA | 1033 | CG6371-RA | 169..741 | 591..19 | 2865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12527746..12528030 | 512..228 | 1425 | 100 | Minus |
3R | 32079331 | 3R | 12528576..12528784 | 227..19 | 1045 | 100 | Minus |
3R | 32079331 | 3R | 12526356..12526440 | 591..507 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:34:04 has no hits.
BO07387.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:10 Download gff for
BO07387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-PA | 1..576 | 16..591 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:48 Download gff for
BO07387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6371-PA | 1..576 | 16..591 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:04 Download gff for
BO07387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-RA | 164..741 | 19..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:14 Download gff for
BO07387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hug-RA | 164..741 | 19..599 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:14 Download gff for
BO07387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12526351..12526439 | 508..599 | 95 | -> | Minus |
3R | 12527751..12528030 | 228..507 | 100 | -> | Minus |
3R | 12528576..12528784 | 19..227 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:04 Download gff for
BO07387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8354298..8354506 | 19..227 | 100 | | Minus |
arm_3R | 8352073..8352161 | 508..599 | 95 | -> | Minus |
arm_3R | 8353473..8353752 | 228..507 | 100 | -> | Minus |
BO07387.5prime Sequence
605 bp (604 high quality bases) assembled on 2005-12-04
> BO07387.5prime
GAAGTTATCAGTCGACATGTGTGGTCCTAGTTATTGCACACTGCTGCTAA
TCGCGGCTTCCTGCTACATCCTTGTTTGCAGTCATGCGAAGTCCTTGCAG
GGCACGAGCAAACTGGATTTGGGAAATCACATCAGCGCCGGCTCTGCCAG
AGGATCATTATCACCAGCTTCACCAGCGTTGAGCGAGGCACGTCAAAAGC
GCGCCATGGGCGACTACAAAGAGCTGACAGACATCATTGACGAGCTGGAG
GAGAATAGCCTGGCCCAGAAGGCCAGTGCCACCATGCAGGTGGCTGCCAT
GCCGCCGCAGGGCCAGGAATTCGATTTGGACACCATGCCGCCACTGACCT
ATTACCTGCTCCTTCAAAAGCTACGACAGCTGCAGAGTAATGGGGAGCCC
GCTTATCGCGTGCGGACGCCACGCCTTGGCCGCAGCATTGACTCCTGGCG
ACTACTGGACGCGGAGGGGGCGACGGGAATGGCGGGCGGCGAGGAGGCCA
TCGGCGGGCAGTTCATGCAGCGCATGGTTAAGAAATCGGTGCCGTTCAAG
CCACGCCTGGGCAAACGTGCTCAAGTGTGCGGTGGCGATGCAAGCTTTCT
AGACC
BO07387.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6371-PA | 576 | hug-RA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hug-RA | 1033 | CG6371-RA | 169..741 | 17..589 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12527746..12528030 | 96..380 | 1425 | 100 | Plus |
3R | 32079331 | 3R | 12528576..12528784 | 381..589 | 1045 | 100 | Plus |
3R | 32079331 | 3R | 12526356..12526440 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:38:37 has no hits.
BO07387.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:11 Download gff for
BO07387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-PA | 1..576 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:49 Download gff for
BO07387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6371-PA | 1..576 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:55:42 Download gff for
BO07387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-RA | 164..741 | 9..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:11 Download gff for
BO07387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hug-RA | 164..741 | 9..589 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:11 Download gff for
BO07387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12526351..12526439 | 9..100 | 95 | -> | Plus |
3R | 12527751..12528030 | 101..380 | 100 | -> | Plus |
3R | 12528576..12528784 | 381..589 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:55:42 Download gff for
BO07387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8352073..8352161 | 9..100 | 95 | -> | Plus |
arm_3R | 8353473..8353752 | 101..380 | 100 | -> | Plus |
arm_3R | 8354298..8354506 | 381..589 | 100 | | Plus |
BO07387.complete Sequence
607 bp (607 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630771
> BO07387.complete
GAAGTTATCAGTCGACATGTGTGGTCCTAGTTATTGCACACTGCTGCTAA
TCGCGGCTTCCTGCTACATCCTTGTTTGCAGTCATGCGAAGTCCTTGCAG
GGCACGAGCAAACTGGATTTGGGAAATCACATCAGCGCCGGCTCTGCCAG
AGGATCATTATCACCAGCTTCACCAGCGTTGAGCGAGGCACGTCAAAAGC
GCGCCATGGGCGACTACAAAGAGCTGACAGACATCATTGACGAGCTGGAG
GAGAATAGCCTGGCCCAGAAGGCCAGTGCCACCATGCAGGTGGCTGCCAT
GCCGCCGCAGGGCCAGGAATTCGATTTGGACACCATGCCGCCACTGACCT
ATTACCTGCTCCTTCAAAAGCTACGACAGCTGCAGAGTAATGGGGAGCCC
GCTTATCGCGTGCGGACGCCACGCCTTGGCCGCAGCATTGACTCCTGGCG
ACTACTGGACGCGGAGGGGGCGACGGGAATGGCGGGCGGCGAGGAGGCCA
TCGGCGGGCAGTTCATGCAGCGCATGGTTAAGAAATCGGTGCCGTTCAAG
CCACGCCTGGGCAAACGTGCTCAAGTGTGCGGTGGCGATGCAAGCTTTCT
AGACCAT
BO07387.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hug-RA | 576 | CG6371-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hug-RA | 1033 | CG6371-RA | 169..741 | 17..589 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12527746..12528030 | 96..380 | 1425 | 100 | Plus |
3R | 32079331 | 3R | 12528576..12528784 | 381..589 | 1045 | 100 | Plus |
3R | 32079331 | 3R | 12526356..12526440 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:51:42 has no hits.
BO07387.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:46 Download gff for
BO07387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-RA | 1..576 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:57 Download gff for
BO07387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-RA | 164..741 | 9..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:09 Download gff for
BO07387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-RA | 169..741 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:46 Download gff for
BO07387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hug-RA | 164..741 | 9..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:21 Download gff for
BO07387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hug-RA | 169..741 | 17..591 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:21 Download gff for
BO07387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12526356..12526439 | 17..100 | 100 | -> | Plus |
3R | 12527751..12528030 | 101..380 | 100 | -> | Plus |
3R | 12528576..12528784 | 381..591 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:09 Download gff for
BO07387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8354298..8354506 | 381..591 | 99 | | Plus |
arm_3R | 8352078..8352161 | 17..100 | 100 | -> | Plus |
arm_3R | 8353473..8353752 | 101..380 | 100 | -> | Plus |
BO07387.pep Sequence
Translation from 16 to 607
> BO07387.pep
MCGPSYCTLLLIAASCYILVCSHAKSLQGTSKLDLGNHISAGSARGSLSP
ASPALSEARQKRAMGDYKELTDIIDELEENSLAQKASATMQVAAMPPQGQ
EFDLDTMPPLTYYLLLQKLRQLQSNGEPAYRVRTPRLGRSIDSWRLLDAE
GATGMAGGEEAIGGQFMQRMVKKSVPFKPRLGKRAQVCGGDASFLDH
BO07387.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hug-PA | 191 | CG6371-PA | 1..191 | 1..191 | 981 | 100 | Plus |