Clone Sequence Records
BO07395.3prime Sequence
662 bp (661 high quality bases) assembled on 2005-12-04
> BO07395.3prime
ATGGTCTAGAAAGCTTGCCTGGCTGTGCAGCAGCTTGTTGAAGTCCGCGT
ACGCCGACTCCAGGTCGAAGAGGAACTGGCGGACCTGGCCCTCGCTCAAC
TCGTCGGAGGCCTGCATCTCGTTCAGGCTGCCCAGCCACTTCTCCACCTT
CAGCTTGGCGTCGAAGTCCTCGGGAATGAGGGACAGGCGATTCATGTTGT
CAGCCAGGTCTTTGACGTCCGGCTGTAGGGCGTCCATGGTGTTGATCTGC
AGGCGTAGCTTGTCCATGATTGTGATGAACAGCGACACGATCTCGGCGAT
GCATTTGGAGGTGTTGCCCTTATCGTCGCGTATGGTGATGGGTCGGTCCT
CGCGGATCCGCTCCAGCGCAGCAGGGCAGTCCAGCCGGAATTTCTTAACG
AACGTCTCCACCGAGGGGAATTCGTCGCACTGCACCTGCTTAAAGGCCAC
CTTGTACTGCACCAGGTATTTGGAGCAGGCGGCCGTGTATTCCTGCGGCG
TAATGCAGTCGCGGATGTAGGCCTTCTCCAGCTGCTGGATGGTGTTGATG
ATTGCGTATAGATCGGCCATGTTGTCGTACTTCTCGCGCTCGCGGGCGTT
ACGGAAGAGCTTCACCTCCTCGTACAGCTCGGGACTTTGTTCCTGCATGT
CGACTGATAACT
BO07395.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12770-PA | 633 | Vps28-RA | 1..630 | 648..19 | 3150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps28-RB | 1173 | CG12770-RB | 88..721 | 652..19 | 3155 | 99.8 | Minus |
| Vps28-RA | 805 | CG12770-RA | 88..721 | 652..19 | 3155 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8079321..8079954 | 19..652 | 3155 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:58:13 has no hits.
BO07395.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:22 Download gff for
BO07395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-PA | 1..633 | 18..648 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:05 Download gff for
BO07395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12770-PA | 1..633 | 18..648 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:38 Download gff for
BO07395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 84..731 | 6..658 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:41 Download gff for
BO07395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 84..731 | 6..658 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:41 Download gff for
BO07395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8079311..8079958 | 6..658 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:38 Download gff for
BO07395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3966816..3967463 | 6..658 | 98 | | Plus |
BO07395.5prime Sequence
662 bp (661 high quality bases) assembled on 2005-12-04
> BO07395.5prime
GAAGTTATCAGTCGACATGCAGGAACAAAGTCCCGAGCTGTACGAGGAGG
TGAAGCTCTTCCGTAACGCCCGCGAGCGCGAGAAGTACGACAACATGGCC
GATCTATACGCAATCATCAACACCATCCAGCAGCTGGAGAAGGCCTACAT
CCGCGACTGCATTACGCCGCAGGAATACACGGCCGCCTGCTCCAAATACC
TGGTGCAGTACAAGGTGGCCTTTAAGCAGGTGCAGTGCGACGAATTCCCC
TCGGTGGAGACGTTCGTTAAGAAATTCCGGCTGGACTGCCCTGCTGCGCT
GGAGCGGATCCGCGAGGACCGACCCATCACCATACGCGACGATNAGGGCA
ACACCTCCAAATGCATCGCCGAGATCGTGTCGCTGTTCATCACAATCATG
GACAAGCTACGCCTGCAGATCAACACCATGGACGCCCTACAGCCGGACGT
CAAAGACCTGGCTGACAACATGAATCGCCTGTCCCTCATTCCCGAGGACT
TCGACGCCAAGCTGAAGGTGGAGAAGTGGCTGGGCAGCCTGAACGAGATG
CAGGCCTCCGACGAGTTGAGCGAGGGCCAGGTCCGCCAGTTCCTCTTCGA
CCTGGAGTCGGCGTACGCGGACTTCAACAAGCTGCTGCACAGCCAGGCAA
GCTTTCTAGACC
BO07395.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12770-PA | 633 | Vps28-RA | 1..630 | 17..646 | 3131 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps28-RB | 1173 | CG12770-RB | 88..721 | 13..646 | 3144 | 99.7 | Plus |
| Vps28-RA | 805 | CG12770-RA | 88..721 | 13..646 | 3144 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8079321..8079954 | 646..13 | 3144 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:44:11 has no hits.
BO07395.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:23 Download gff for
BO07395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-PA | 1..633 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:06 Download gff for
BO07395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12770-PA | 1..633 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:19 Download gff for
BO07395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 84..731 | 7..659 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:59 Download gff for
BO07395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 84..731 | 7..659 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:59 Download gff for
BO07395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8079311..8079958 | 7..659 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:19 Download gff for
BO07395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3966816..3967463 | 7..659 | 98 | | Minus |
BO07395.complete Sequence
664 bp (664 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630772
> BO07395.complete
GAAGTTATCAGTCGACATGCAGGAACAAAGTCCCGAGCTGTACGAGGAGG
TGAAGCTCTTCCGTAACGCCCGCGAGCGCGAGAAGTACGACAACATGGCC
GATCTATACGCAATCATCAACACCATCCAGCAGCTGGAGAAGGCCTACAT
CCGCGACTGCATTACGCCGCAGGAATACACGGCCGCCTGCTCCAAATACC
TGGTGCAGTACAAGGTGGCCTTTAAGCAGGTGCAGTGCGACGAATTCCCC
TCGGTGGAGACGTTCGTTAAGAAATTCCGGCTGGACTGCCCTGCTGCGCT
GGAGCGGATCCGCGAGGACCGACCCATCACCATACGCGACGATAAGGGCA
ACACCTCCAAATGCATCGCCGAGATCGTGTCGCTGTTCATCACAATCATG
GACAAGCTACGCCTGCAGATCAACACCATGGACGCCCTACAGCCGGACGT
CAAAGACCTGGCTGACAACATGAATCGCCTGTCCCTCATTCCCGAGGACT
TCGACGCCAAGCTGAAGGTGGAGAAGTGGCTGGGCAGCCTGAACGAGATG
CAGGCCTCCGACGAGTTGAGCGAGGGCCAGGTCCGCCAGTTCCTCTTCGA
CCTGGAGTCGGCGTACGCGGACTTCAACAAGCTGCTGCACAGCCAGGCAA
GCTTTCTAGACCAT
BO07395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps28-RB | 633 | CG12770-PB | 1..630 | 17..646 | 3150 | 100 | Plus |
| Vps28-RA | 633 | CG12770-PA | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps28-RB | 1173 | CG12770-RB | 88..721 | 13..646 | 3155 | 99.8 | Plus |
| Vps28-RA | 805 | CG12770-RA | 88..721 | 13..646 | 3155 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8079321..8079954 | 646..13 | 3155 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:39:58 has no hits.
BO07395.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:47 Download gff for
BO07395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 1..633 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:50 Download gff for
BO07395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 78..725 | 7..659 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:39 Download gff for
BO07395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 92..721 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:47 Download gff for
BO07395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 78..725 | 7..659 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:31 Download gff for
BO07395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps28-RA | 92..721 | 17..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:31 Download gff for
BO07395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8079317..8079950 | 17..648 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:39 Download gff for
BO07395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3966822..3967455 | 17..648 | 99 | | Minus |
BO07395.pep Sequence
Translation from 16 to 664
> BO07395.pep
MQEQSPELYEEVKLFRNAREREKYDNMADLYAIINTIQQLEKAYIRDCIT
PQEYTAACSKYLVQYKVAFKQVQCDEFPSVETFVKKFRLDCPAALERIRE
DRPITIRDDKGNTSKCIAEIVSLFITIMDKLRLQINTMDALQPDVKDLAD
NMNRLSLIPEDFDAKLKVEKWLGSLNEMQASDELSEGQVRQFLFDLESAY
ADFNKLLHSQASFLDH
BO07395.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps28-PB | 210 | CG12770-PB | 1..210 | 1..210 | 1076 | 100 | Plus |
| Vps28-PA | 210 | CG12770-PA | 1..210 | 1..210 | 1076 | 100 | Plus |
