Clone Sequence Records
BO07402.3prime Sequence
958 bp (808 high quality bases) assembled on 2006-01-06
> BO07402.3prime
ATGGTCTAGAAAGCTTGCACCCGAATAGTCATTGGCAATAGCTGCGACAT
CGGCATCGTCCCGGAACATTTGCGCCACTTGGGCGCTGGGCAGGACCTTC
TGTGAGCTACCGGTCTTCGTCTTTCGCCAGATGTCCCACTCCACCGGATG
CATTTTCTTCTTGTGGGAGTGCATGTTGGCGTTGGAGTTGAAGGTGCGGG
GACAGAAGGGACACTTGTAGAGTGGCTCGCCAGTGTGCTGCGCCATATGC
TCCTTAAGGCTGATGTCCTTCTTGAAGGTTTTGCCACACTGCTCGCAGGT
GTAGATCACATTCGAGTGGGAGTAGCGCTTATGACCAATCAGCGCGCGGG
AGTTCTTGCAGCTCTTGCCACACTCTGAGCAGATAAACAGCTTGCCCTCG
TCGTTGTGGCGCCTCAAATGCTGCTTAAGATTGTCCTCGTCCTTCAGCCA
GCTCTCGCAGTCAGGACGCGGGCACTTGATCCGTGGTCCGCTCTCCTCGA
AGTGCAGGCGAACGTGCTTTTCGAAGACAGCCTTGTCCTTGATCTTCTTG
CCGCACACATGGCAGATATTGGCCGCCTTGCGGTGCTGCATGCTGATATG
GACCTGCATGTGGTACTCCGTGGCAAAAGCATTGTGTTTGGGGCACTGCG
GGCAGATGAACTTGCGCTCATTTACGGGCACATGGGAGCCCTTGTGCAGT
TCGAGCAGGTTGCGTCGCGAGAAGCGTTTGCCGCAGTCCTCGCACTGGAA
GTCGCACTCCTCGTCTGGAACATGGTGGACCAGCCAGTGGGCACGCAATA
CGCTGGAATTGGCGAACACCTTTCGCAGTCCTTGCATTTGATGTACTCGG
GATTCTCATGCCTCCTCGCATGCTCCTGGATGAGGCAGCGCTTGTTGAGC
TTGCGTCCGCAGCACTTGATGTAGGGGCGCTCGTCCGGATGCTTGTCCTT
GAAGTGCT
BO07402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33133-PA | 1713 | grau-RA | 905..1710 | 824..19 | 4030 | 100 | Minus |
| CG33133-PA | 1713 | grau-RA | 770..904 | 958..824 | 650 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grau-RA | 1894 | CG33133-RA | 846..1786 | 958..19 | 4665 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21010168..21010544 | 252..628 | 1885 | 100 | Plus |
| 2R | 25286936 | 2R | 21009872..21010107 | 19..254 | 1180 | 100 | Plus |
| 2R | 25286936 | 2R | 21010607..21010816 | 629..837 | 1000 | 99.5 | Plus |
| 2R | 25286936 | 2R | 21010879..21010999 | 838..958 | 590 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:52:06 has no hits.
BO07402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:27 Download gff for
BO07402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-PA | 770..1713 | 18..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:11 Download gff for
BO07402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33133-PA | 770..1713 | 18..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:05:07 Download gff for
BO07402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 846..1791 | 13..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:35:03 Download gff for
BO07402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 846..1791 | 13..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:35:03 Download gff for
BO07402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21010607..21010816 | 629..837 | 99 | <- | Plus |
| 2R | 21010879..21010999 | 838..958 | 99 | | Plus |
| 2R | 21009867..21010105 | 13..252 | 98 | <- | Plus |
| 2R | 21010169..21010544 | 253..628 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:05:07 Download gff for
BO07402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16897372..16897610 | 13..252 | 98 | <- | Plus |
| arm_2R | 16897674..16898049 | 253..628 | 100 | <- | Plus |
| arm_2R | 16898112..16898321 | 629..837 | 99 | <- | Plus |
| arm_2R | 16898384..16898504 | 838..958 | 99 | | Plus |
BO07402.5prime Sequence
791 bp (790 high quality bases) assembled on 2006-01-06
> BO07402.5prime
GAAGTTATCAGTCGACATGGATATCTGCCGCCTCTGTTTACGCGGAGTGA
GCGGCGCCCAGATGTGTCTACAGATCTTCGATGTGGACTCGGGCGAGAGC
AAGGTGGCGGAGGTGCTGCGCCAACATTTCTGGTTCGAGGTACTGCCCAA
CGACGAGATATCCAAGGTTATTTGCAACGTCTGCTGGACGCAGGTGTCCG
AGTTCCATCAGTTCTACGTGTCCATACAGGAGGCCCAGGTGATATACGCC
ACCACCTCCAAGTTCAAGCAGGATCCGGAGATGGTGAACACCTCCTGGCC
GGAGGAGGTGCTCATGCCGGCCGACGTCCTTGCCGTCGACAACGATGTCG
GTGCGCAGATAAATGTGAATCCCCTGGACGAGTTAGACCTTAGCCAACCC
ATGTCCCCGGAAGACAGCAAGGTGGGCATCAAAACAGAGCGACAGTCACC
CGACATGGAACTCCTCTTTGAGGATGCCAACAATGAACAGGATGAGGACT
ACGAGGACGACGAGGATGATGACACCGACGACCTGATCGTGACCCGGAGT
GGACGCAAACGTAAACGGGACGTGGCCAAGCCGGCTAAAACGAAAAGAGG
AACGGTGTCGGTGGGCAGAAAGGGGAAGGAGAAGATGGTGGTCAAGCGGG
GACCGCCCAAGAGGATATTCAAGATGGAACGCCTGCCGCCGTTTTGCAAA
GAGGACGAGGAACTGATCAAGCGCTACATAGTCATGGGCTGCGAGCTGTG
CATATTCTTGGCCGAGGACTTCGACGGCATCCGCGAGCACT
BO07402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33133-PA | 1713 | grau-RA | 1..775 | 17..791 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grau-RA | 1894 | CG33133-RA | 73..851 | 13..791 | 3880 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21010994..21011647 | 791..138 | 3270 | 100 | Minus |
| 2R | 25286936 | 2R | 21011720..21011849 | 142..13 | 635 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:17:11 has no hits.
BO07402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:28 Download gff for
BO07402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:12 Download gff for
BO07402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33133-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:05 Download gff for
BO07402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 66..851 | 7..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:53 Download gff for
BO07402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 66..851 | 7..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:53 Download gff for
BO07402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21010994..21011645 | 140..791 | 100 | <- | Minus |
| 2R | 21011723..21011852 | 7..139 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:05 Download gff for
BO07402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16898499..16899150 | 140..791 | 100 | <- | Minus |
| arm_2R | 16899228..16899357 | 7..139 | 96 | | Minus |
BO07402.complete Sequence
1744 bp (1744 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630773
> BO07402.complete
GAAGTTATCAGTCGACATGGATATCTGCCGCCTCTGTTTACGCGGAGTGA
GCGGCGCCCAGATGTGTCTACAGATCTTCGATGTGGACTCGGGCGAGAGC
AAGGTGGCGGAGGTGCTGCGCCAACATTTCTGGTTCGAGGTACTGCCCAA
CGACGAGATATCCAAGGTTATTTGCAACGTCTGCTGGACGCAGGTGTCCG
AGTTCCATCAGTTCTACGTGTCCATACAGGAGGCCCAGGTGATATACGCC
ACCACCTCCAAGTTCAAGCAGGATCCGGAGATGGTGAACACCTCCTGGCC
GGAGGAGGTGCTCATGCCGGCCGACGTCCTTGCCGTCGACAACGATGTCG
GTGCGCAGATAAATGTGAATCCCCTGGACGAGTTAGACCTTAGCCAACCC
ATGTCCCCGGAAGACAGCAAGGTGGGCATCAAAACAGAGCGACAGTCACC
CGACATGGAACTCCTCTTTGAGGATGCCAACAATGAACAGGATGAGGACT
ACGAGGACGACGAGGATGATGACACCGACGACCTGATCGTGACCCGGAGT
GGACGCAAACGTAAACGGGACGTGGCCAAGCCGGCTAAAACGAAAAGAGG
AACGGTGTCGGTGGGCAGAAAGGGGAAGGAGAAGATGGTGGTCAAGCGGG
GACCGCCCAAGAGGATATTCAAGATGGAACGCCTGCCGCCGTTTTGCAAA
GAGGACGAGGAACTGATCAAGCGCTACATAGTCATGGGCTGCGAGCTGTG
CATATTCTTGGCCGAGGACTTCGACGGCATCCGCGAGCACTTCAAGGACA
AGCATCCGGACGAGCGGCCCTACATCAAGTGCTGCGGACGCAAGCTCAAC
AAGCGCTGCCTCATCCAGGAGCATGCGAGGAGGCATGAGAATCCCGAGTA
CATCAAATGCAAGGACTGCGGAAAGGTGTTCGCCAATTCCAGCGTATTGC
GTGCCCACTGGCTGGTCCACCATGTTCCAGACGAGGAGTGCGACTTCCAG
TGCGAGGACTGCGGCAAACGCTTCTCGCGACGCAACCTGCTCGAACTGCA
CAAGGGCTCCCATGTGCCCGTAAATGAGCGCAAGTTCATCTGCCCGCAGT
GCCCCAAACACAATGCTTTTGCCACGGAGTACCACATGCAGGTCCATATC
AGCATGCAGCACCGCAAGGCGGCCAATATCTGCCATGTGTGCGGCAAGAA
GATCAAGGACAAGGCTGTCTTCGAAAAGCACGTTCGCCTGCACTTCGAGG
AGAGCGGACCACGGATCAAGTGCCCGCGTCCTGACTGCGAGAGCTGGCTG
AAGGACGAGGACAATCTTAAGCAGCATTTGAGGCGCCACAACGACGAGGG
CAAGCTGTTTATCTGCTCAGAGTGTGGCAAGAGCTGCAAGAACTCCCGCG
CGCTGATTGGTCATAAGCGCTACTCCCACTCGAATGTGATCTACACCTGC
GAGCAGTGTGGCAAAACCTTCAAGAAGGACATCAGCCTTAAGGAGCATAT
GGCGCAGCACACTGGCGAGCCACTCTACAAGTGTCCCTTCTGTCCCCGCA
CCTTCAACTCCAACGCCAACATGCACTCCCACAAGAAGAAAATGCATCCG
GTGGAGTGGGACATCTGGCGAAAGACGAAGACCGGTAGCTCACAGAAGGT
CCTGCCCAGCGCCCAAGTGGCGCAAATGTTCCGGGACGATGCCGATGTCG
CAGCTATTGCCAATGACTATTCGGGTGCAAGCTTTCTAGACCAT
BO07402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grau-RA | 1713 | CG33133-PA | 1..1710 | 17..1726 | 8550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grau-RA | 1894 | CG33133-RA | 73..1786 | 13..1726 | 8555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:25:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21010879..21011647 | 906..138 | 3845 | 100 | Minus |
| 2R | 25286936 | 2R | 21010168..21010544 | 1493..1117 | 1885 | 100 | Minus |
| 2R | 25286936 | 2R | 21009872..21010107 | 1726..1491 | 1180 | 100 | Minus |
| 2R | 25286936 | 2R | 21010607..21010816 | 1116..907 | 1050 | 100 | Minus |
| 2R | 25286936 | 2R | 21011720..21011849 | 142..13 | 635 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:25:25 has no hits.
BO07402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:08 Download gff for
BO07402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 1..1713 | 17..1727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:09 Download gff for
BO07402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 64..1789 | 7..1732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:40:28 Download gff for
BO07402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 77..1786 | 17..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:09 Download gff for
BO07402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 64..1789 | 7..1732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:09 Download gff for
BO07402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grau-RA | 77..1786 | 17..1728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:09 Download gff for
BO07402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21010169..21010544 | 1117..1492 | 100 | <- | Minus |
| 2R | 21009870..21010105 | 1493..1728 | 99 | <- | Minus |
| 2R | 21010607..21010816 | 907..1116 | 100 | <- | Minus |
| 2R | 21010879..21011645 | 140..906 | 100 | <- | Minus |
| 2R | 21011723..21011845 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:40:28 Download gff for
BO07402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16897375..16897610 | 1493..1728 | 99 | <- | Minus |
| arm_2R | 16897674..16898049 | 1117..1492 | 100 | <- | Minus |
| arm_2R | 16898112..16898321 | 907..1116 | 100 | <- | Minus |
| arm_2R | 16898384..16899150 | 140..906 | 100 | <- | Minus |
| arm_2R | 16899228..16899350 | 17..139 | 100 | | Minus |
BO07402.pep Sequence
Translation from 16 to 1744
> BO07402.pep
MDICRLCLRGVSGAQMCLQIFDVDSGESKVAEVLRQHFWFEVLPNDEISK
VICNVCWTQVSEFHQFYVSIQEAQVIYATTSKFKQDPEMVNTSWPEEVLM
PADVLAVDNDVGAQINVNPLDELDLSQPMSPEDSKVGIKTERQSPDMELL
FEDANNEQDEDYEDDEDDDTDDLIVTRSGRKRKRDVAKPAKTKRGTVSVG
RKGKEKMVVKRGPPKRIFKMERLPPFCKEDEELIKRYIVMGCELCIFLAE
DFDGIREHFKDKHPDERPYIKCCGRKLNKRCLIQEHARRHENPEYIKCKD
CGKVFANSSVLRAHWLVHHVPDEECDFQCEDCGKRFSRRNLLELHKGSHV
PVNERKFICPQCPKHNAFATEYHMQVHISMQHRKAANICHVCGKKIKDKA
VFEKHVRLHFEESGPRIKCPRPDCESWLKDEDNLKQHLRRHNDEGKLFIC
SECGKSCKNSRALIGHKRYSHSNVIYTCEQCGKTFKKDISLKEHMAQHTG
EPLYKCPFCPRTFNSNANMHSHKKKMHPVEWDIWRKTKTGSSQKVLPSAQ
VAQMFRDDADVAAIANDYSGASFLDH
BO07402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grau-PA | 570 | CG33133-PA | 1..570 | 1..570 | 3121 | 100 | Plus |
| CG15073-PA | 580 | CG15073-PA | 2..527 | 3..539 | 791 | 33.1 | Plus |
| CG15073-PB | 551 | CG15073-PB | 2..498 | 3..539 | 706 | 31.3 | Plus |
| CG8388-PA | 572 | CG8388-PA | 3..535 | 4..544 | 683 | 29.5 | Plus |
| CG4707-PA | 673 | CG4707-PA | 221..638 | 128..536 | 600 | 34.6 | Plus |
