Clone Sequence Records
BO07406.3prime Sequence
916 bp (829 high quality bases) assembled on 2006-01-06
> BO07406.3prime
ATGGTCTAGAAAGCTTGCCTCCACATTGAAGACAACACCCTGGGCGCAGG
CCAATTCTCCGGAGTGATTGACTGTAATGGTGGCCCGCTTGCAATACTGC
TTCCAGGCATCGGATCCGGACTCGCGACCTCCTCCAGTGGCTTTTTCGCC
TCCGAAAGCTCCACCAATCTCGGCGCCGTTGGTGGTGGTGTTGATGTTAA
CTATACCGCAATCGGAACCCTTGGCTCCAATCCACTTGAACGCCTGCCCG
ATGTTCTCCGTGAAAATGGCAGAGGATAAGCCCTGTTCCACCTCATTGTT
CCATTCGATGGCCTGGTCCACGTTTTTGGCTTTGAGGATGTACACAATTG
GTGCAAAGGTTTCGCGATGGACAACGCTGGCATCGTGCGGCAATCCAGTG
ATCACTGTGGGCTCTACGTAAAAACCATCCCGCTGGATGACATTACCTCC
GAAGGCCACCGTTCCTCCTAAGGATTTCGCTTCCGCGATGGCCGCCTTGT
AGTTCTCCACGTTTTGTTGCGTGTGCACGGGACCCACCAGAGTTTGAGCT
TCGAGCTGGTGTCCAATCTTGGAAATTAGCTGCTTATATTTACCAACCAG
CTCCTTTACGAACTGATCGTGCAGCTTTTCGTGGACAATAATCCTCCTGG
TGGTGGTGCATCTTTGACCACTGGTGCCAATGCAGCCGAAAAGTGCGGCG
TCCAGGGCCATCTTCACGTTGGCAGATTCATCGATGATTAGGGCATTATT
GCCGCCTAGCTCGAGGATCACCTTGCCGAATCTGCGCTGCACTTCAACAC
CCACATCCCGACCAGTTTGGCAGCTGCCGGTGAAGGAAACGAGGTTAACT
CTCTTATCAGCCACCAAGGTCTGACCAACATCGGTTCCTCCTTGGCAGAG
GGTCACCACCGGCGGC
BO07406.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9629-PA | 1623 | CG9629-RA | 723..1620 | 916..19 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9629-RA | 2053 | CG9629-RA | 789..1686 | 916..19 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19266840..19267737 | 19..916 | 4490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:29:52 has no hits.
BO07406.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:36 Download gff for
BO07406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-PA | 723..1623 | 18..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:23 Download gff for
BO07406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-PA | 723..1623 | 18..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:03:24 Download gff for
BO07406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 789..1686 | 19..916 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:30 Download gff for
BO07406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 789..1686 | 19..916 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:30 Download gff for
BO07406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19266840..19267737 | 19..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:03:24 Download gff for
BO07406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19259940..19260837 | 19..916 | 100 | | Plus |
BO07406.5prime Sequence
969 bp (796 high quality bases) assembled on 2006-01-06
> BO07406.5prime
GAAGTTATCAGTCGACATGTTGGCACAATTGAGAAATATTTCGAAGCTGG
CGCTGCCGCGCCGCCTCGTTACCCAAACCGCCAGCTACTCATCGTCCTCG
TCATATCTCATTGACCAGCCGGAGTACAGTTTCCTGAAAGAATTGGGACT
GGAGCGCGACAATCCAGGTGTTTATTCGGGTCAGTGGCAGGGTCGTGGGC
CATCCGTTACCAGCTACGATCCCGGAACTGGTCAACCGATTGCCAAAGTG
CGTCAGGGAAATGTCCAGGAGCTCGAGCATACCATCGGGCTGGCGGTGGA
AGCCTACAAGCAGTGGCGACAGGTTCCAGCTCCCGTTCGCGGCGAAATAG
TGCGCCAAATCGGCGATGAGCTGAGAAAGTACAAGGAACCACTGGGAAAG
CTCGTCTCCCTGGAGGTGGGCAAAATCTACAGCGAGGGACAGGGCGAGGT
TCAGGAGTTCATAGATATCTGCGACTATGCGGTTGGCCTCTCAAGGATTT
ACTCCGGCCAGCTGATCAACTCGGAGCGTGCGGATCATTCGATTCTGGAG
GCCTGGCGTCCGCTGGGAGTGGTGGGCGTTATTTCGGCCTACAATTTTCC
CAATGCTGTGTTCGGCTGGAATGCTGCCATCGCCCTAACCACCGGCAACA
GTGTGCTGTGGAAAGGAGCTCCCAGCACTCCCTTGGTCTCGGTGGCGACC
ACAAAAATTGTGGCTGAAGTGCTGCGTAGGAACAATCTGCCGCCGGTGGT
GACCCTCTGCCAAGGAGGAACCGATGTTGGTCAGACCTTGGTGGCTGATA
AGAGAGTTAACCTCGTTTCCTTCACCGGCAGCTGCCAAACTGGTCGGGAT
GTGGGTGTTGAAGTGCAGCGCAGATTCGGCAAGGTGATCCTCGAGCTAGG
CGGCAATAATGCCCTAATCATCGATGAATCTGCCAACGTGAAGATGGGCC
TGGACGCCGCACTTTTTCG
BO07406.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9629-PA | 1623 | CG9629-RA | 1..950 | 17..966 | 4725 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9629-RA | 2053 | CG9629-RA | 65..1016 | 15..966 | 4745 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19267510..19268460 | 966..16 | 4740 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:29:54 has no hits.
BO07406.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:37 Download gff for
BO07406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-PA | 1..952 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:24 Download gff for
BO07406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-PA | 1..952 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:03:27 Download gff for
BO07406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 65..1018 | 15..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:35 Download gff for
BO07406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 65..1018 | 15..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:35 Download gff for
BO07406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19267508..19268460 | 16..969 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:03:27 Download gff for
BO07406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19260608..19261560 | 16..969 | 99 | | Minus |
BO07406.complete Sequence
1654 bp (1654 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630774
> BO07406.complete
GAAGTTATCAGTCGACATGTTGGCACAATTGAGAAATATTTCGAAGCTGG
CGCTGCCGCGCCGCCTCGTTACCCAAACCGCCAGCTACTCATCGTCCTCG
TCATATCTCATTGACCAGCCGGAGTACAGTTTCCTGAAAGAATTGGGACT
GGAGCGCGACAATCCAGGTGTTTATTCGGGTCAGTGGCAGGGTCGTGGGC
CATCCGTTACCAGCTACGATCCCGGAACTGGTCAACCGATTGCCAAAGTG
CGTCAGGGAAATGTCCAGGAGCTCGAGCATACCATCGGGCTGGCGGTGGA
AGCCTACAAGCAGTGGCGACAGGTTCCAGCTCCCGTTCGCGGCGAAATAG
TGCGCCAAATCGGCGATGAGCTGAGAAAGTACAAGGAACCACTGGGAAAG
CTCGTCTCCCTGGAGGTGGGCAAAATCTACAGCGAGGGACAGGGCGAGGT
TCAGGAGTTCATAGATATCTGCGACTATGCGGTTGGCCTCTCAAGGATTT
ACTCCGGCCAGCTGATCAACTCGGAGCGTGCGGATCATTCGATTCTGGAG
GCCTGGCGTCCGCTGGGAGTGGTGGGCGTTATTTCGGCCTACAATTTTCC
CAATGCTGTGTTCGGCTGGAATGCTGCCATCGCCCTAACCACCGGCAACA
GTGTGCTGTGGAAAGGAGCTCCCAGCACTCCCTTGGTCTCGGTGGCGACC
ACAAAAATTGTGGCTGAAGTGCTGCGTAGGAACAATCTGCCGCCGGTGGT
GACCCTCTGCCAAGGAGGAACCGATGTTGGTCAGACCTTGGTGGCTGATA
AGAGAGTTAACCTCGTTTCCTTCACCGGCAGCTGCCAAACTGGTCGGGAT
GTGGGTGTTGAAGTGCAGCGCAGATTCGGCAAGGTGATCCTCGAGCTAGG
CGGCAATAATGCCCTAATCATCGATGAATCTGCCAACGTGAAGATGGCCC
TGGACGCCGCACTTTTCGGCTGCATTGGCACCAGTGGTCAAAGATGCACC
ACCACCAGGAGGATTATTGTCCACGAAAAGCTGCACGATCAGTTCGTAAA
GGAGCTGGTTGGTAAATATAAGCAGCTAATTTCCAAGATTGGACACCAGC
TCGAAGCTCAAACTCTGGTGGGTCCCGTGCACACGCAACAAAACGTGGAG
AACTACAAGGCGGCCATCGCGGAAGCGAAATCCTTAGGAGGAACGGTGGC
CTTCGGAGGTAATGTCATCCAGCGGGATGGTTTTTACGTAGAGCCCACAG
TGATCACTGGATTGCCGCACGATGCCAGCGTTGTCCATCGCGAAACCTTT
GCACCAATTGTGTACATCCTCAAAGCCAAAAACGTGGACCAGGCCATCGA
ATGGAACAATGAGGTGGAACAGGGCTTATCCTCTGCCATTTTCACGGAGA
ACATCGGGCAGGCGTTCAAGTGGATTGGAGCCAAGGGTTCCGATTGCGGT
ATAGTTAACATCAACACCACCACCAACGGCGCCGAGATTGGTGGAGCTTT
CGGAGGCGAAAAAGCCACTGGAGGAGGTCGCGAGTCCGGATCCGATGCCT
GGAAGCAGTATTGCAAGCGGGCCACCATTACAGTCAATCACTCCGGAGAA
TTGGCCTGCGCCCAGGGTGTTGTCTTCAATGTGGAGGCAAGCTTTCTAGA
CCAT
BO07406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:03:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9629-RA | 1623 | CG9629-PA | 1..1620 | 17..1636 | 8100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9629-RA | 2053 | CG9629-RA | 65..1686 | 15..1636 | 8110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:03:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19266840..19268460 | 1636..16 | 8105 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:03:14 has no hits.
BO07406.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:28 Download gff for
BO07406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 1..1623 | 17..1637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:14 Download gff for
BO07406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 61..1682 | 15..1636 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:33 Download gff for
BO07406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 72..1686 | 22..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:29 Download gff for
BO07406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 61..1682 | 15..1636 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:47 Download gff for
BO07406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9629-RA | 72..1686 | 22..1638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:47 Download gff for
BO07406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19266838..19268454 | 22..1638 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:33 Download gff for
BO07406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19259938..19261554 | 22..1638 | 99 | | Minus |
BO07406.pep Sequence
Translation from 16 to 1654
> BO07406.pep
MLAQLRNISKLALPRRLVTQTASYSSSSSYLIDQPEYSFLKELGLERDNP
GVYSGQWQGRGPSVTSYDPGTGQPIAKVRQGNVQELEHTIGLAVEAYKQW
RQVPAPVRGEIVRQIGDELRKYKEPLGKLVSLEVGKIYSEGQGEVQEFID
ICDYAVGLSRIYSGQLINSERADHSILEAWRPLGVVGVISAYNFPNAVFG
WNAAIALTTGNSVLWKGAPSTPLVSVATTKIVAEVLRRNNLPPVVTLCQG
GTDVGQTLVADKRVNLVSFTGSCQTGRDVGVEVQRRFGKVILELGGNNAL
IIDESANVKMALDAALFGCIGTSGQRCTTTRRIIVHEKLHDQFVKELVGK
YKQLISKIGHQLEAQTLVGPVHTQQNVENYKAAIAEAKSLGGTVAFGGNV
IQRDGFYVEPTVITGLPHDASVVHRETFAPIVYILKAKNVDQAIEWNNEV
EQGLSSAIFTENIGQAFKWIGAKGSDCGIVNINTTTNGAEIGGAFGGEKA
TGGGRESGSDAWKQYCKRATITVNHSGELACAQGVVFNVEASFLDH
BO07406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9629-PA | 540 | CG9629-PA | 1..540 | 1..540 | 2786 | 100 | Plus |
| Ssadh-PE | 509 | CG4685-PE | 51..495 | 68..515 | 478 | 26.8 | Plus |
| Ssadh-PD | 509 | CG4685-PD | 51..495 | 68..515 | 478 | 26.8 | Plus |
| Ssadh-PC | 509 | CG4685-PC | 51..495 | 68..515 | 478 | 26.8 | Plus |
| Ssadh-PB | 509 | CG4685-PB | 51..495 | 68..515 | 478 | 26.8 | Plus |
