Clone BO07409 Report

Search the DGRC for BO07409

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG10139-RA
Protein status:BO07409.pep: validated full length
Sequenced Size:706

Clone Sequence Records

BO07409.3prime Sequence

629 bp (526 high quality bases) assembled on 2006-01-06

> BO07409.3prime
ATGGTCTAGAAAGCTTGCATTATAAGTGGGAGCCCGATCGATGGACGCTG
CCTCCAATATCACCTTCATTATCTTGTCCTTGGCAAACTCGGAGGCGTCG
GTGTTCAACTGTCGTAGCCGGTCGGCCACAAAGTCTCCGAAGATCTGGGA
GCTGTCCTTCTGGGTGCGCAGAGCATTGGCCACTGCCTTGTTGACCATTT
CCTCGTCCATAATGCTGATGGTGGACATCTCGCCCTCGCCTTCAACGTCG
TCCTCTAGCCTTTGCTCGCCGCCGCCGGTCAGGGAGCACGATGAGAACAT
GACCTGCTCTGGTTCGTAAAGTGCCAGGTTCTCAATGATTTCCTCGTAGT
CGACGGACTGATCCGATGCACTGATTTTTTCCTTTTTTACCGGGGAAGTT
TTTGGCTGCGACTTCACCTTGACCTTGTAGGGAGTGGTGCTGGAGCTGCT
GGCGGATGACCTGTTTAAGGGGCTGTCGTCTGTGGTTTTGATTTGCTGTT
TAAGGTTTAAGTGCTTCATATGCTTCTTGGCCGACGCATGTGCACGCAGA
TCGCTTATTTTGGTGTTTACGCAGCATTTGCAGAAGCGGCAGTGCGCCCG
GAAGGAGTCGTCCGGATCACGCCGTAGCC

BO07409.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10139-PA 675 CG10139-RA 67..672 624..19 2980 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10139-RB 954 CG10139-RB 84..694 629..19 3010 99.5 Minus
CG10139-RA 825 CG10139-RA 148..758 629..19 3010 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14645614..14646084 489..19 2355 100 Minus
2R 25286936 2R 14645417..14645556 629..490 655 97.9 Minus
Blast to na_te.dros performed 2015-02-11 21:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 845..947 428..326 119 57.3 Minus

BO07409.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:42 Download gff for BO07409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-PA 62..675 15..629 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:31 Download gff for BO07409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-PA 62..675 15..629 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:20 Download gff for BO07409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 148..761 15..629 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:45:02 Download gff for BO07409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 148..761 15..629 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:45:02 Download gff for BO07409.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14645417..14645556 490..629 97 -> Minus
2R 14645614..14646087 15..489 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:20 Download gff for BO07409.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10532922..10533061 490..629 97 -> Minus
arm_2R 10533119..10533592 15..489 99   Minus

BO07409.5prime Sequence

594 bp (433 high quality bases) assembled on 2006-01-06

> BO07409.5prime
GAAGTTATCAGTCGACATGAAAATTTACAAGCAGAAACTGCGCGATGTGT
GGCTGCAAATGGAGGAGTTTCGTGCGTGGCTGCGGCGTGATCCGGACGAC
TCCTACCGGGCGCACTGCCGCTTCTGCAAATGCTGCGTAAACACCAAAAT
AAGCGATCTGCGTGCACATGCGTCGACCAAGAAGCATATGAAGCACTTAA
ACCTTAAACAGCAAATCAAAACCACCGACGACAGCCCCTTAAACAGGTCA
TCCGCCAGCAGCTCCAGCACCACTCCCTACAAGGTCAAGGTGAAGTCGCA
GCCAAAAACTTCCCCGGTAAAAAAGGAAAAAATCAGTGCATCGGATCAGT
CCGTCGACTACGAGGAAATCATTGAGAACCTGGCACTTTACGAACCAGAG
CAGGTCATGTTCTCATCGTGCTCCCTGACCGGCGGCGACGAGCAAAGGCT
AGAGGACGACGTTGAAGGCGAGGGCGAGATGTCCACCATCAGCATTATGG
ACGAGGAAATGGTCAACAAGGCAGTGGCCAATGCTCTGCGCACCCAGAAA
GGACAGCTCCCAGATCTTCGGAGACTTTGTGGCCGACCGGCTAC

BO07409.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10139-PA 675 CG10139-RA 1..533 17..549 2615 99.6 Plus
CG10139-PA 675 CG10139-RA 532..577 549..594 230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10139-RA 825 CG10139-RA 87..663 17..594 2835 99.5 Plus
CG10139-RB 954 CG10139-RB 41..599 35..594 2745 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14645614..14645989 218..594 1805 99.2 Plus
2R 25286936 2R 14645356..14645556 17..217 1005 100 Plus
Blast to na_te.dros performed 2015-02-12 14:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 845..947 279..381 119 57.3 Plus

BO07409.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:43 Download gff for BO07409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-PA 1..577 17..594 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:32 Download gff for BO07409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-PA 1..577 17..594 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:06 Download gff for BO07409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 79..663 11..594 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:55 Download gff for BO07409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 79..663 11..594 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:55 Download gff for BO07409.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14645348..14645556 11..217 98 -> Plus
2R 14645614..14645989 218..594 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:06 Download gff for BO07409.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10532853..10533061 11..217 98 -> Plus
arm_2R 10533119..10533494 218..594 99   Plus

BO07409.complete Sequence

706 bp (706 high quality bases) assembled on 2006-08-21

GenBank Submission: FJ630775

> BO07409.complete
GAAGTTATCAGTCGACATGAAAATTTACAAGCAGAAACTGCGCGATGTGT
GGCTGCAAATGGAGGAGTTTCGTGCGTGGCTGCGGCGTGATCCGGACGAC
TCCTACCGGGCGCACTGCCGCTTCTGCAAATGCTGCGTAAACACCAAAAT
AAGCGATCTGCGTGCACATGCGTCGACCAAGAAGCATATGAAGCACTTAA
ACCTTAAACAGCAAATCAAAACCACAGACGACAGCCCCTTAAACAGGTCA
TCCGCCAGCAGCTCCAGCACCACTCCCTACAAGGTCAAGGTGAAGTCGCA
GCCAAAAACTTCCCCGGTAAAAAAGGAAAAAATCAGTGCATCGGATCAGT
CCGTCGACTACGAGGAAATCATTGAGAACCTGGCACTTTACGAACCAGAG
CAGGTCATGTTCTCATCGTGCTCCCTGACCGGCGGCGGCGAGCAAAGGCT
AGAGGACGACGTTGAAGGCGAGGGCGAGATGTCCACCATCAGCATTATGG
ACGAGGAAATGGTCAACAAGGCAGTGGCCAATGCTCTGCGCACCCAGAAG
GACAGCTCCCAGATCTTCGGAGACTTTGTGGCCGACCGGCTACGACAGTT
GAACACCGACGCCTCCGAGTTTGCCAAGGACAAGATAATGAAGGTGATAT
TGGAGGCAGCGTCCATCGATCGGGCTCCCACTTATAATGCAAGCTTTCTA
GACCAT

BO07409.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10139-RA 675 CG10139-PA 1..672 17..688 3360 100 Plus
CG10139-RB 633 CG10139-PB 1..630 59..688 3150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10139-RA 825 CG10139-RA 87..758 17..688 3360 100 Plus
CG10139-RB 954 CG10139-RB 41..694 35..688 3270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14645614..14646084 218..688 2355 100 Plus
2R 25286936 2R 14645356..14645556 17..217 1005 100 Plus
Blast to na_te.dros performed 2014-11-27 07:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 845..947 279..381 119 57.3 Plus

BO07409.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:38 Download gff for BO07409.complete
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 1..675 17..692 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:49 Download gff for BO07409.complete
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 78..760 11..692 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:58 Download gff for BO07409.complete
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 87..758 17..690 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:35:38 Download gff for BO07409.complete
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 78..760 11..692 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:13 Download gff for BO07409.complete
Subject Subject Range Query Range Percent Splice Strand
CG10139-RA 87..758 17..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:13 Download gff for BO07409.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14645356..14645556 17..217 100 -> Plus
2R 14645614..14646084 218..690 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:58 Download gff for BO07409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10532861..10533061 17..217 100 -> Plus
arm_2R 10533119..10533589 218..690 99   Plus

BO07409.pep Sequence

Translation from 16 to 706

> BO07409.pep
MKIYKQKLRDVWLQMEEFRAWLRRDPDDSYRAHCRFCKCCVNTKISDLRA
HASTKKHMKHLNLKQQIKTTDDSPLNRSSASSSSTTPYKVKVKSQPKTSP
VKKEKISASDQSVDYEEIIENLALYEPEQVMFSSCSLTGGGEQRLEDDVE
GEGEMSTISIMDEEMVNKAVANALRTQKDSSQIFGDFVADRLRQLNTDAS
EFAKDKIMKVILEAASIDRAPTYNASFLDH

BO07409.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10139-PA 224 CG10139-PA 1..224 1..224 1149 100 Plus
CG10139-PB 210 CG10139-PB 1..210 15..224 1074 100 Plus
l(2)05714-PC 260 CG8886-PC 15..244 2..213 150 22.6 Plus
l(2)05714-PA 260 CG8886-PA 15..244 2..213 150 22.6 Plus