Clone Sequence Records
BO07409.3prime Sequence
629 bp (526 high quality bases) assembled on 2006-01-06
> BO07409.3prime
ATGGTCTAGAAAGCTTGCATTATAAGTGGGAGCCCGATCGATGGACGCTG
CCTCCAATATCACCTTCATTATCTTGTCCTTGGCAAACTCGGAGGCGTCG
GTGTTCAACTGTCGTAGCCGGTCGGCCACAAAGTCTCCGAAGATCTGGGA
GCTGTCCTTCTGGGTGCGCAGAGCATTGGCCACTGCCTTGTTGACCATTT
CCTCGTCCATAATGCTGATGGTGGACATCTCGCCCTCGCCTTCAACGTCG
TCCTCTAGCCTTTGCTCGCCGCCGCCGGTCAGGGAGCACGATGAGAACAT
GACCTGCTCTGGTTCGTAAAGTGCCAGGTTCTCAATGATTTCCTCGTAGT
CGACGGACTGATCCGATGCACTGATTTTTTCCTTTTTTACCGGGGAAGTT
TTTGGCTGCGACTTCACCTTGACCTTGTAGGGAGTGGTGCTGGAGCTGCT
GGCGGATGACCTGTTTAAGGGGCTGTCGTCTGTGGTTTTGATTTGCTGTT
TAAGGTTTAAGTGCTTCATATGCTTCTTGGCCGACGCATGTGCACGCAGA
TCGCTTATTTTGGTGTTTACGCAGCATTTGCAGAAGCGGCAGTGCGCCCG
GAAGGAGTCGTCCGGATCACGCCGTAGCC
BO07409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10139-PA | 675 | CG10139-RA | 67..672 | 624..19 | 2980 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:55:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10139-RB | 954 | CG10139-RB | 84..694 | 629..19 | 3010 | 99.5 | Minus |
CG10139-RA | 825 | CG10139-RA | 148..758 | 629..19 | 3010 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14645614..14646084 | 489..19 | 2355 | 100 | Minus |
2R | 25286936 | 2R | 14645417..14645556 | 629..490 | 655 | 97.9 | Minus |
Blast to na_te.dros performed 2015-02-11 21:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G6 | 2042 | G6 G6_DM 2042bp | 845..947 | 428..326 | 119 | 57.3 | Minus |
BO07409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:42 Download gff for
BO07409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-PA | 62..675 | 15..629 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:31 Download gff for
BO07409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-PA | 62..675 | 15..629 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:20 Download gff for
BO07409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 148..761 | 15..629 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:45:02 Download gff for
BO07409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 148..761 | 15..629 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:45:02 Download gff for
BO07409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14645417..14645556 | 490..629 | 97 | -> | Minus |
2R | 14645614..14646087 | 15..489 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:20 Download gff for
BO07409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10532922..10533061 | 490..629 | 97 | -> | Minus |
arm_2R | 10533119..10533592 | 15..489 | 99 | | Minus |
BO07409.5prime Sequence
594 bp (433 high quality bases) assembled on 2006-01-06
> BO07409.5prime
GAAGTTATCAGTCGACATGAAAATTTACAAGCAGAAACTGCGCGATGTGT
GGCTGCAAATGGAGGAGTTTCGTGCGTGGCTGCGGCGTGATCCGGACGAC
TCCTACCGGGCGCACTGCCGCTTCTGCAAATGCTGCGTAAACACCAAAAT
AAGCGATCTGCGTGCACATGCGTCGACCAAGAAGCATATGAAGCACTTAA
ACCTTAAACAGCAAATCAAAACCACCGACGACAGCCCCTTAAACAGGTCA
TCCGCCAGCAGCTCCAGCACCACTCCCTACAAGGTCAAGGTGAAGTCGCA
GCCAAAAACTTCCCCGGTAAAAAAGGAAAAAATCAGTGCATCGGATCAGT
CCGTCGACTACGAGGAAATCATTGAGAACCTGGCACTTTACGAACCAGAG
CAGGTCATGTTCTCATCGTGCTCCCTGACCGGCGGCGACGAGCAAAGGCT
AGAGGACGACGTTGAAGGCGAGGGCGAGATGTCCACCATCAGCATTATGG
ACGAGGAAATGGTCAACAAGGCAGTGGCCAATGCTCTGCGCACCCAGAAA
GGACAGCTCCCAGATCTTCGGAGACTTTGTGGCCGACCGGCTAC
BO07409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10139-PA | 675 | CG10139-RA | 1..533 | 17..549 | 2615 | 99.6 | Plus |
CG10139-PA | 675 | CG10139-RA | 532..577 | 549..594 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10139-RA | 825 | CG10139-RA | 87..663 | 17..594 | 2835 | 99.5 | Plus |
CG10139-RB | 954 | CG10139-RB | 41..599 | 35..594 | 2745 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14645614..14645989 | 218..594 | 1805 | 99.2 | Plus |
2R | 25286936 | 2R | 14645356..14645556 | 17..217 | 1005 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 14:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G6 | 2042 | G6 G6_DM 2042bp | 845..947 | 279..381 | 119 | 57.3 | Plus |
BO07409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:43 Download gff for
BO07409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-PA | 1..577 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:32 Download gff for
BO07409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-PA | 1..577 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:06 Download gff for
BO07409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 79..663 | 11..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:55 Download gff for
BO07409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 79..663 | 11..594 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:55 Download gff for
BO07409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14645348..14645556 | 11..217 | 98 | -> | Plus |
2R | 14645614..14645989 | 218..594 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:06 Download gff for
BO07409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10532853..10533061 | 11..217 | 98 | -> | Plus |
arm_2R | 10533119..10533494 | 218..594 | 99 | | Plus |
BO07409.complete Sequence
706 bp (706 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ630775
> BO07409.complete
GAAGTTATCAGTCGACATGAAAATTTACAAGCAGAAACTGCGCGATGTGT
GGCTGCAAATGGAGGAGTTTCGTGCGTGGCTGCGGCGTGATCCGGACGAC
TCCTACCGGGCGCACTGCCGCTTCTGCAAATGCTGCGTAAACACCAAAAT
AAGCGATCTGCGTGCACATGCGTCGACCAAGAAGCATATGAAGCACTTAA
ACCTTAAACAGCAAATCAAAACCACAGACGACAGCCCCTTAAACAGGTCA
TCCGCCAGCAGCTCCAGCACCACTCCCTACAAGGTCAAGGTGAAGTCGCA
GCCAAAAACTTCCCCGGTAAAAAAGGAAAAAATCAGTGCATCGGATCAGT
CCGTCGACTACGAGGAAATCATTGAGAACCTGGCACTTTACGAACCAGAG
CAGGTCATGTTCTCATCGTGCTCCCTGACCGGCGGCGGCGAGCAAAGGCT
AGAGGACGACGTTGAAGGCGAGGGCGAGATGTCCACCATCAGCATTATGG
ACGAGGAAATGGTCAACAAGGCAGTGGCCAATGCTCTGCGCACCCAGAAG
GACAGCTCCCAGATCTTCGGAGACTTTGTGGCCGACCGGCTACGACAGTT
GAACACCGACGCCTCCGAGTTTGCCAAGGACAAGATAATGAAGGTGATAT
TGGAGGCAGCGTCCATCGATCGGGCTCCCACTTATAATGCAAGCTTTCTA
GACCAT
BO07409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10139-RA | 675 | CG10139-PA | 1..672 | 17..688 | 3360 | 100 | Plus |
CG10139-RB | 633 | CG10139-PB | 1..630 | 59..688 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10139-RA | 825 | CG10139-RA | 87..758 | 17..688 | 3360 | 100 | Plus |
CG10139-RB | 954 | CG10139-RB | 41..694 | 35..688 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14645614..14646084 | 218..688 | 2355 | 100 | Plus |
2R | 25286936 | 2R | 14645356..14645556 | 17..217 | 1005 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G6 | 2042 | G6 G6_DM 2042bp | 845..947 | 279..381 | 119 | 57.3 | Plus |
BO07409.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:38 Download gff for
BO07409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 1..675 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:49 Download gff for
BO07409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 78..760 | 11..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:58 Download gff for
BO07409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 87..758 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:35:38 Download gff for
BO07409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 78..760 | 11..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:13 Download gff for
BO07409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10139-RA | 87..758 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:13 Download gff for
BO07409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14645356..14645556 | 17..217 | 100 | -> | Plus |
2R | 14645614..14646084 | 218..690 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:58 Download gff for
BO07409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10532861..10533061 | 17..217 | 100 | -> | Plus |
arm_2R | 10533119..10533589 | 218..690 | 99 | | Plus |
BO07409.pep Sequence
Translation from 16 to 706
> BO07409.pep
MKIYKQKLRDVWLQMEEFRAWLRRDPDDSYRAHCRFCKCCVNTKISDLRA
HASTKKHMKHLNLKQQIKTTDDSPLNRSSASSSSTTPYKVKVKSQPKTSP
VKKEKISASDQSVDYEEIIENLALYEPEQVMFSSCSLTGGGEQRLEDDVE
GEGEMSTISIMDEEMVNKAVANALRTQKDSSQIFGDFVADRLRQLNTDAS
EFAKDKIMKVILEAASIDRAPTYNASFLDH
BO07409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10139-PA | 224 | CG10139-PA | 1..224 | 1..224 | 1149 | 100 | Plus |
CG10139-PB | 210 | CG10139-PB | 1..210 | 15..224 | 1074 | 100 | Plus |
l(2)05714-PC | 260 | CG8886-PC | 15..244 | 2..213 | 150 | 22.6 | Plus |
l(2)05714-PA | 260 | CG8886-PA | 15..244 | 2..213 | 150 | 22.6 | Plus |