Clone Sequence Records
BO07413.3prime Sequence
901 bp (873 high quality bases) assembled on 2006-01-06
> BO07413.3prime
ATGGTCTAGAAAGCTTGCGAGCGCGAGCAGATCCTCTTCGGCGCCCGGTT
TCTTTGGTGTCTTTCGTAAGCTATCGGCTCCTGCCGATCCTGTCGTGGCA
CTGGCGGCGGAGTTCGATGCACTGATCGTTGGAAGATTCTCGGCGGCAGC
GGCTCTCTCCTCTAGGAATTTGTCAAACTCCGAGCTGGTCAGCTCCTCAA
TTCCCTCGATGTGTGAGCTGCCCAACCACGCCTCCATCTCGTCGATCTCA
TTCTCTTTCGTCGATTTACTTACCACCGGCGGTTCGCCGGCTGAGCGCTG
TGCCTGCTGCGGTTGATTTGGTTTGTAAGGCGAGGCGGTGGCAGTCACAC
TCCCAGCAGCAGCGTCCACCGAGGGAATGTCCCGCAGCAAGTCCGATTTA
TGGTTGCCATCGGTGCGCGACTGTGCCAGCATATCGAATTCATCGGCAGG
TCGTGCGCTCCTCTGCACCCCAATGGGTGCTCCACCACCCAGGCTGATCT
GTCCCAAACTCTGTGGCAGTTGGGCTTCCTCGCTGCTTTCGATTAGATCG
ATCAGCAGTTGGTCACTTTGCGGCGTATTGCTCACGGCGGTAGTTGTGGG
CGGAGGTGGTAGCGTAGCCACCGTGGTGGCTCCTGCTCCAGCTGCTCCCA
CACCGGGCAGGCCCATGGCTGCGCCCAGCACAGCCGAGGGCGAGGTAACA
CCAGCACCCTGGCCCTGCGAACGATTTTTCTCGTAACGCTGGTGGCGCAA
GAACACATTGTTCAGCTCGTCATTGATGCGCAGGAACTCCGCGGTGAGCT
CGTCGTCCTGGACACGTCCAATCAGATCCACGATGCGAGACTGCATCTCC
TTGCAGGTCGAGGTGAGCTCATTGAGCAGGGCATAGTCATCGGGCGACTC
C
BO07413.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3529-PB | 1632 | CG3529-RB | 747..1629 | 901..19 | 4415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3529-RB | 2120 | CG3529-RB | 879..1761 | 901..19 | 4415 | 100 | Minus |
CG3529-RD | 2111 | CG3529-RD | 879..1752 | 901..19 | 4270 | 99 | Minus |
CG3529-RC | 2069 | CG3529-RC | 879..1515 | 901..265 | 3185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9449128..9449628 | 901..401 | 2505 | 100 | Minus |
3L | 28110227 | 3L | 9450232..9450426 | 213..19 | 975 | 100 | Minus |
3L | 28110227 | 3L | 9449689..9449824 | 400..265 | 680 | 100 | Minus |
3L | 28110227 | 3L | 9450018..9450068 | 264..214 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:12:54 has no hits.
BO07413.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:50 Download gff for
BO07413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-PB | 747..1632 | 16..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:41 Download gff for
BO07413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-PB | 747..1632 | 16..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:04 Download gff for
BO07413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 879..1761 | 19..901 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:52 Download gff for
BO07413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 879..1761 | 19..901 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:52 Download gff for
BO07413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9450232..9450426 | 19..213 | 100 | | Minus |
3L | 9449128..9449628 | 401..901 | 100 | -> | Minus |
3L | 9449689..9449824 | 265..400 | 100 | -> | Minus |
3L | 9450018..9450068 | 214..264 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:04 Download gff for
BO07413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9442228..9442728 | 401..901 | 100 | -> | Minus |
arm_3L | 9442789..9442924 | 265..400 | 100 | -> | Minus |
arm_3L | 9443118..9443168 | 214..264 | 100 | -> | Minus |
arm_3L | 9443332..9443526 | 19..213 | 100 | | Minus |
BO07413.5prime Sequence
951 bp (856 high quality bases) assembled on 2006-01-06
> BO07413.5prime
GAAGTTATCAGTCGACATGGCTTCATTTTTCAACGTTGGCGCCTTGGGAA
ATGTTTTCTCCACTCCAGTTGGCCAGCGCATAGAGGCCGCCACCGATGCC
AACCTGGCCTCGGAGAACTGGGCCGCCAACATGGAGATCTGCGACATGAT
CAACGAATCCTCCGACACTGCACGCGATGCTATGCGTGCCATTCGCAAAC
GCCTCTCCCAGAACGCCGGCAAAAACAACCAGGTGGTGATGTACACGCTG
ACCGTCCTGGAGACATGCGTGAAGAACTGCGGCAAGGCCTTCCATGTCCT
GGTGGCCCAGAAGGACTTCATCAACGAGCTGGTCAAGCTGATTGGGCCCA
AGAACGATCCACCAGCCGCCATGCAGGAGAAGGTTCTCAGTCTGATACAA
ATCTGGGCGGATGCGTTTAAGAACCAACCGGATCTCAACGGCGTCACCCA
GATGTACATGGAATTGAAAAACAAGGGCATCGAGTTTCCAGCCAACGATC
TGGATGCCATGGCACCCATTTACACGCCACAGAGGAGTGTTCCCGAGATG
CCCCCTCAGCTGGTGGCCGCTCAGCAGCACACAATCTCGCCTCAACACAT
GGCTGCCGCTGCTGCCGCCGCAGCTGCAGCCGCAGCTCCACCCAGCACAG
GTCCTTTGCATTTGACTCCCGAGCAAGCGGCTAAGCTGCGCTCCGAACTG
GAGATCGTTAGCAACAATATGTCCATCCTCAGCGAGATGCTCAGTGTTCT
GAAGCCCGGCCAGGAGTCGCCCGATGACTATGCCCTGCTCAATGAGCTCA
CCTCGACCTGCAAGGAGATGCAGTCTCGCATCGTGGATCTGATTGGACGT
GTCCAGGACGACGAGCTCACCGCGGAGTTCCTGCGCATCAATGACGAGCT
GAACAATGTGTTCTTTGCGCACCAGCGTTACGAGAAAAATCGTTCGCAAG
G
BO07413.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3529-PB | 1632 | CG3529-RB | 1..899 | 17..915 | 4495 | 100 | Plus |
CG3529-PB | 1632 | CG3529-RB | 904..932 | 920..948 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3529-RD | 2111 | CG3529-RD | 133..1064 | 17..948 | 4615 | 99.8 | Plus |
CG3529-RC | 2069 | CG3529-RC | 133..1064 | 17..948 | 4615 | 99.8 | Plus |
CG3529-RB | 2120 | CG3529-RB | 133..1064 | 17..948 | 4615 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9448386..9448839 | 82..535 | 2270 | 100 | Plus |
3L | 28110227 | 3L | 9448900..9449313 | 535..948 | 2010 | 99 | Plus |
3L | 28110227 | 3L | 9446996..9447062 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:18:36 has no hits.
BO07413.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:51 Download gff for
BO07413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-PB | 1..934 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:42 Download gff for
BO07413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-PB | 1..934 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:08 Download gff for
BO07413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 125..1066 | 8..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:30 Download gff for
BO07413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 125..1066 | 8..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:30 Download gff for
BO07413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9446988..9447062 | 8..83 | 94 | -> | Plus |
3L | 9448388..9448839 | 84..535 | 100 | -> | Plus |
3L | 9448901..9449315 | 536..951 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:08 Download gff for
BO07413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9440088..9440162 | 8..83 | 94 | -> | Plus |
arm_3L | 9441488..9441939 | 84..535 | 100 | -> | Plus |
arm_3L | 9442001..9442415 | 536..951 | 99 | | Plus |
BO07413.complete Sequence
1663 bp (1663 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630776
> BO07413.complete
GAAGTTATCAGTCGACATGGCTTCATTTTTCAACGTTGGCGCCTTGGGAA
ATGTTTTCTCCACTCCAGTTGGCCAGCGCATAGAGGCCGCCACCGATGCC
AACCTGGCCTCGGAGAACTGGGCCGCCAACATGGAGATCTGCGACATGAT
CAACGAATCCTCCGACACTGCACGCGATGCTATGCGTGCCATTCGCAAAC
GCCTCTCCCAGAACGCCGGCAAAAACAACCAGGTGGTGATGTACACGCTG
ACCGTCCTGGAGACATGCGTGAAGAACTGCGGCAAGGCCTTCCATGTCCT
GGTGGCCCAGAAGGACTTCATCAACGAGCTGGTCAAGCTGATTGGGCCCA
AGAACGATCCACCAGCCGCCATGCAGGAGAAGGTTCTCAGTCTGATACAA
ATCTGGGCGGATGCGTTTAAGAACCAACCGGATCTCAACGGCGTCACCCA
GATGTACATGGAATTGAAAAACAAGGGCATCGAGTTTCCAGCCAACGATC
TGGATGCCATGGCACCCATTTACACGCCACAGAGGAGTGTTCCCGAGATG
CCCCCTCAGCTGGTGGCCGCTCAGCAGCACACAATCTCGCCTCAACACAT
GGCTGCCGCTGCTGCCGCCGCAGCTGCAGCCGCAGCTCCACCCAGCACAG
GTCCTTTGCATTTGACTCCCGAGCAAGCGGCTAAGCTGCGCTCCGAACTG
GAGATCGTTAGCAACAATATGTCCATCCTCAGCGAGATGCTCAGTGTTCT
GAAGCCCGGCCAGGAGTCGCCCGATGACTATGCCCTGCTCAATGAGCTCA
CCTCGACCTGCAAGGAGATGCAGTCTCGCATCGTGGATCTGATTGGACGT
GTCCAGGACGACGAGCTCACCGCGGAGTTCCTGCGCATCAATGACGAGCT
GAACAATGTGTTCTTGCGCCACCAGCGTTACGAGAAAAATCGTTCGCAGG
GCCAGGGTGCTGGTGTTACCTCGCCCTCGGCTGTGCTGGGCGCAGCCATG
GGCCTGCCCGGTGTGGGAGCAGCTGGAGCAGGAGCCACCACGGTGGCTAC
GCTACCACCTCCGCCCACAACTACCGCCGTGAGCAATACGCCGCAAAGTG
ACCAACTGCTGATCGATCTAATCGAAAGCAGCGAGGAAGCCCAACTGCCA
CAGAGTTTGGGACAGATCAGCCTGGGTGGTGGAGCACCCATTGGGGTGCA
GAGGAGCGCACGACCTGCCGATGAATTCGATATGCTGGCACAGTCGCGCA
CCGATGGCAACCATAAATCGGACTTGCTGCGGGACATTCCCTCGGTGGAC
GCTGCTGCTGGGAGTGTGACTGCCACCGCCTCGCCTTACAAACCAAATCA
ACCGCAGCAGGCACAGCGCTCAGCCGGCGAACCGCCGGTGGTAAGTAAAT
CGACGAAAGAGAATGAGATCGACGAGATGGAGGCGTGGTTGGGCAGCTCA
CACATCGAGGGAATTGAGGAGCTGACCAGCTCGGAGTTTGACAAATTCCT
AGAGGAGAGAGCCGCTGCCGCCGAGAATCTTCCAACGATCAGTGCATCGA
ACTCCGCCGCCAGTGCCACGACAGGATCGGCAGGAGCCGATAGCTTACGA
AAGACACCAAAGAAACCGGGCGCCGAAGAGGATCTGCTCGCGCTCGCAAG
CTTTCTAGACCAT
BO07413.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3529-RB | 1632 | CG3529-PB | 1..1629 | 17..1645 | 8145 | 100 | Plus |
CG3529-RD | 1623 | CG3529-PD | 1..1620 | 17..1645 | 7975 | 99.4 | Plus |
CG3529-RC | 1581 | CG3529-PC | 1..1383 | 17..1399 | 6915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3529-RB | 2120 | CG3529-RB | 133..1761 | 17..1645 | 8145 | 100 | Plus |
CG3529-RD | 2111 | CG3529-RD | 133..1752 | 17..1645 | 7975 | 99.4 | Plus |
CG3529-RC | 2069 | CG3529-RC | 133..1515 | 17..1399 | 6915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9448900..9449628 | 535..1263 | 3645 | 100 | Plus |
3L | 28110227 | 3L | 9448386..9448839 | 82..535 | 2270 | 100 | Plus |
3L | 28110227 | 3L | 9450232..9450426 | 1451..1645 | 975 | 100 | Plus |
3L | 28110227 | 3L | 9449689..9449824 | 1264..1399 | 680 | 100 | Plus |
3L | 28110227 | 3L | 9446996..9447062 | 17..83 | 335 | 100 | Plus |
3L | 28110227 | 3L | 9450018..9450068 | 1400..1450 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:17:13 has no hits.
BO07413.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:48 Download gff for
BO07413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 1..1632 | 17..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:52 Download gff for
BO07413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 114..1750 | 8..1645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:53 Download gff for
BO07413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 133..1761 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:48 Download gff for
BO07413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 114..1750 | 8..1645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:45 Download gff for
BO07413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3529-RB | 133..1761 | 17..1647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:45 Download gff for
BO07413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9449689..9449824 | 1264..1399 | 100 | -> | Plus |
3L | 9450018..9450068 | 1400..1450 | 100 | -> | Plus |
3L | 9450232..9450426 | 1451..1647 | 98 | | Plus |
3L | 9446996..9447062 | 17..83 | 100 | -> | Plus |
3L | 9448388..9448839 | 84..535 | 100 | -> | Plus |
3L | 9448901..9449628 | 536..1263 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:53 Download gff for
BO07413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9440096..9440162 | 17..83 | 100 | -> | Plus |
arm_3L | 9441488..9441939 | 84..535 | 100 | -> | Plus |
arm_3L | 9442001..9442728 | 536..1263 | 100 | -> | Plus |
arm_3L | 9442789..9442924 | 1264..1399 | 100 | -> | Plus |
arm_3L | 9443118..9443168 | 1400..1450 | 100 | -> | Plus |
arm_3L | 9443332..9443526 | 1451..1647 | 98 | | Plus |
BO07413.pep Sequence
Translation from 16 to 1663
> BO07413.pep
MASFFNVGALGNVFSTPVGQRIEAATDANLASENWAANMEICDMINESSD
TARDAMRAIRKRLSQNAGKNNQVVMYTLTVLETCVKNCGKAFHVLVAQKD
FINELVKLIGPKNDPPAAMQEKVLSLIQIWADAFKNQPDLNGVTQMYMEL
KNKGIEFPANDLDAMAPIYTPQRSVPEMPPQLVAAQQHTISPQHMAAAAA
AAAAAAAPPSTGPLHLTPEQAAKLRSELEIVSNNMSILSEMLSVLKPGQE
SPDDYALLNELTSTCKEMQSRIVDLIGRVQDDELTAEFLRINDELNNVFL
RHQRYEKNRSQGQGAGVTSPSAVLGAAMGLPGVGAAGAGATTVATLPPPP
TTTAVSNTPQSDQLLIDLIESSEEAQLPQSLGQISLGGGAPIGVQRSARP
ADEFDMLAQSRTDGNHKSDLLRDIPSVDAAAGSVTATASPYKPNQPQQAQ
RSAGEPPVVSKSTKENEIDEMEAWLGSSHIEGIEELTSSEFDKFLEERAA
AAENLPTISASNSAASATTGSAGADSLRKTPKKPGAEEDLLALASFLDH
BO07413.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3529-PB | 543 | CG3529-PB | 1..543 | 1..543 | 2735 | 100 | Plus |
CG3529-PD | 540 | CG3529-PD | 1..540 | 1..543 | 2708 | 99.4 | Plus |
CG3529-PC | 526 | CG3529-PC | 1..526 | 1..543 | 2619 | 96.9 | Plus |
Stam-PA | 689 | CG6521-PA | 7..173 | 15..187 | 200 | 27 | Plus |
Hrs-PC | 760 | CG2903-PC | 1..149 | 13..165 | 177 | 30.5 | Plus |