Clone BO07413 Report

Search the DGRC for BO07413

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG3529-RB
Protein status:BO07413.pep: validated full length
Sequenced Size:1663

Clone Sequence Records

BO07413.3prime Sequence

901 bp (873 high quality bases) assembled on 2006-01-06

> BO07413.3prime
ATGGTCTAGAAAGCTTGCGAGCGCGAGCAGATCCTCTTCGGCGCCCGGTT
TCTTTGGTGTCTTTCGTAAGCTATCGGCTCCTGCCGATCCTGTCGTGGCA
CTGGCGGCGGAGTTCGATGCACTGATCGTTGGAAGATTCTCGGCGGCAGC
GGCTCTCTCCTCTAGGAATTTGTCAAACTCCGAGCTGGTCAGCTCCTCAA
TTCCCTCGATGTGTGAGCTGCCCAACCACGCCTCCATCTCGTCGATCTCA
TTCTCTTTCGTCGATTTACTTACCACCGGCGGTTCGCCGGCTGAGCGCTG
TGCCTGCTGCGGTTGATTTGGTTTGTAAGGCGAGGCGGTGGCAGTCACAC
TCCCAGCAGCAGCGTCCACCGAGGGAATGTCCCGCAGCAAGTCCGATTTA
TGGTTGCCATCGGTGCGCGACTGTGCCAGCATATCGAATTCATCGGCAGG
TCGTGCGCTCCTCTGCACCCCAATGGGTGCTCCACCACCCAGGCTGATCT
GTCCCAAACTCTGTGGCAGTTGGGCTTCCTCGCTGCTTTCGATTAGATCG
ATCAGCAGTTGGTCACTTTGCGGCGTATTGCTCACGGCGGTAGTTGTGGG
CGGAGGTGGTAGCGTAGCCACCGTGGTGGCTCCTGCTCCAGCTGCTCCCA
CACCGGGCAGGCCCATGGCTGCGCCCAGCACAGCCGAGGGCGAGGTAACA
CCAGCACCCTGGCCCTGCGAACGATTTTTCTCGTAACGCTGGTGGCGCAA
GAACACATTGTTCAGCTCGTCATTGATGCGCAGGAACTCCGCGGTGAGCT
CGTCGTCCTGGACACGTCCAATCAGATCCACGATGCGAGACTGCATCTCC
TTGCAGGTCGAGGTGAGCTCATTGAGCAGGGCATAGTCATCGGGCGACTC
C

BO07413.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-PB 1632 CG3529-RB 747..1629 901..19 4415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-RB 2120 CG3529-RB 879..1761 901..19 4415 100 Minus
CG3529-RD 2111 CG3529-RD 879..1752 901..19 4270 99 Minus
CG3529-RC 2069 CG3529-RC 879..1515 901..265 3185 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9449128..9449628 901..401 2505 100 Minus
3L 28110227 3L 9450232..9450426 213..19 975 100 Minus
3L 28110227 3L 9449689..9449824 400..265 680 100 Minus
3L 28110227 3L 9450018..9450068 264..214 255 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:12:54 has no hits.

BO07413.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:50 Download gff for BO07413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-PB 747..1632 16..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:41 Download gff for BO07413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-PB 747..1632 16..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:04 Download gff for BO07413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 879..1761 19..901 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:52 Download gff for BO07413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 879..1761 19..901 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:52 Download gff for BO07413.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9450232..9450426 19..213 100   Minus
3L 9449128..9449628 401..901 100 -> Minus
3L 9449689..9449824 265..400 100 -> Minus
3L 9450018..9450068 214..264 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:04 Download gff for BO07413.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9442228..9442728 401..901 100 -> Minus
arm_3L 9442789..9442924 265..400 100 -> Minus
arm_3L 9443118..9443168 214..264 100 -> Minus
arm_3L 9443332..9443526 19..213 100   Minus

BO07413.5prime Sequence

951 bp (856 high quality bases) assembled on 2006-01-06

> BO07413.5prime
GAAGTTATCAGTCGACATGGCTTCATTTTTCAACGTTGGCGCCTTGGGAA
ATGTTTTCTCCACTCCAGTTGGCCAGCGCATAGAGGCCGCCACCGATGCC
AACCTGGCCTCGGAGAACTGGGCCGCCAACATGGAGATCTGCGACATGAT
CAACGAATCCTCCGACACTGCACGCGATGCTATGCGTGCCATTCGCAAAC
GCCTCTCCCAGAACGCCGGCAAAAACAACCAGGTGGTGATGTACACGCTG
ACCGTCCTGGAGACATGCGTGAAGAACTGCGGCAAGGCCTTCCATGTCCT
GGTGGCCCAGAAGGACTTCATCAACGAGCTGGTCAAGCTGATTGGGCCCA
AGAACGATCCACCAGCCGCCATGCAGGAGAAGGTTCTCAGTCTGATACAA
ATCTGGGCGGATGCGTTTAAGAACCAACCGGATCTCAACGGCGTCACCCA
GATGTACATGGAATTGAAAAACAAGGGCATCGAGTTTCCAGCCAACGATC
TGGATGCCATGGCACCCATTTACACGCCACAGAGGAGTGTTCCCGAGATG
CCCCCTCAGCTGGTGGCCGCTCAGCAGCACACAATCTCGCCTCAACACAT
GGCTGCCGCTGCTGCCGCCGCAGCTGCAGCCGCAGCTCCACCCAGCACAG
GTCCTTTGCATTTGACTCCCGAGCAAGCGGCTAAGCTGCGCTCCGAACTG
GAGATCGTTAGCAACAATATGTCCATCCTCAGCGAGATGCTCAGTGTTCT
GAAGCCCGGCCAGGAGTCGCCCGATGACTATGCCCTGCTCAATGAGCTCA
CCTCGACCTGCAAGGAGATGCAGTCTCGCATCGTGGATCTGATTGGACGT
GTCCAGGACGACGAGCTCACCGCGGAGTTCCTGCGCATCAATGACGAGCT
GAACAATGTGTTCTTTGCGCACCAGCGTTACGAGAAAAATCGTTCGCAAG
G

BO07413.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-PB 1632 CG3529-RB 1..899 17..915 4495 100 Plus
CG3529-PB 1632 CG3529-RB 904..932 920..948 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-RD 2111 CG3529-RD 133..1064 17..948 4615 99.8 Plus
CG3529-RC 2069 CG3529-RC 133..1064 17..948 4615 99.8 Plus
CG3529-RB 2120 CG3529-RB 133..1064 17..948 4615 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9448386..9448839 82..535 2270 100 Plus
3L 28110227 3L 9448900..9449313 535..948 2010 99 Plus
3L 28110227 3L 9446996..9447062 17..83 335 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:18:36 has no hits.

BO07413.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:17:51 Download gff for BO07413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-PB 1..934 17..951 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:42 Download gff for BO07413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-PB 1..934 17..951 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:08 Download gff for BO07413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 125..1066 8..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:30 Download gff for BO07413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 125..1066 8..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:30 Download gff for BO07413.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9446988..9447062 8..83 94 -> Plus
3L 9448388..9448839 84..535 100 -> Plus
3L 9448901..9449315 536..951 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:08 Download gff for BO07413.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9440088..9440162 8..83 94 -> Plus
arm_3L 9441488..9441939 84..535 100 -> Plus
arm_3L 9442001..9442415 536..951 99   Plus

BO07413.complete Sequence

1663 bp (1663 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630776

> BO07413.complete
GAAGTTATCAGTCGACATGGCTTCATTTTTCAACGTTGGCGCCTTGGGAA
ATGTTTTCTCCACTCCAGTTGGCCAGCGCATAGAGGCCGCCACCGATGCC
AACCTGGCCTCGGAGAACTGGGCCGCCAACATGGAGATCTGCGACATGAT
CAACGAATCCTCCGACACTGCACGCGATGCTATGCGTGCCATTCGCAAAC
GCCTCTCCCAGAACGCCGGCAAAAACAACCAGGTGGTGATGTACACGCTG
ACCGTCCTGGAGACATGCGTGAAGAACTGCGGCAAGGCCTTCCATGTCCT
GGTGGCCCAGAAGGACTTCATCAACGAGCTGGTCAAGCTGATTGGGCCCA
AGAACGATCCACCAGCCGCCATGCAGGAGAAGGTTCTCAGTCTGATACAA
ATCTGGGCGGATGCGTTTAAGAACCAACCGGATCTCAACGGCGTCACCCA
GATGTACATGGAATTGAAAAACAAGGGCATCGAGTTTCCAGCCAACGATC
TGGATGCCATGGCACCCATTTACACGCCACAGAGGAGTGTTCCCGAGATG
CCCCCTCAGCTGGTGGCCGCTCAGCAGCACACAATCTCGCCTCAACACAT
GGCTGCCGCTGCTGCCGCCGCAGCTGCAGCCGCAGCTCCACCCAGCACAG
GTCCTTTGCATTTGACTCCCGAGCAAGCGGCTAAGCTGCGCTCCGAACTG
GAGATCGTTAGCAACAATATGTCCATCCTCAGCGAGATGCTCAGTGTTCT
GAAGCCCGGCCAGGAGTCGCCCGATGACTATGCCCTGCTCAATGAGCTCA
CCTCGACCTGCAAGGAGATGCAGTCTCGCATCGTGGATCTGATTGGACGT
GTCCAGGACGACGAGCTCACCGCGGAGTTCCTGCGCATCAATGACGAGCT
GAACAATGTGTTCTTGCGCCACCAGCGTTACGAGAAAAATCGTTCGCAGG
GCCAGGGTGCTGGTGTTACCTCGCCCTCGGCTGTGCTGGGCGCAGCCATG
GGCCTGCCCGGTGTGGGAGCAGCTGGAGCAGGAGCCACCACGGTGGCTAC
GCTACCACCTCCGCCCACAACTACCGCCGTGAGCAATACGCCGCAAAGTG
ACCAACTGCTGATCGATCTAATCGAAAGCAGCGAGGAAGCCCAACTGCCA
CAGAGTTTGGGACAGATCAGCCTGGGTGGTGGAGCACCCATTGGGGTGCA
GAGGAGCGCACGACCTGCCGATGAATTCGATATGCTGGCACAGTCGCGCA
CCGATGGCAACCATAAATCGGACTTGCTGCGGGACATTCCCTCGGTGGAC
GCTGCTGCTGGGAGTGTGACTGCCACCGCCTCGCCTTACAAACCAAATCA
ACCGCAGCAGGCACAGCGCTCAGCCGGCGAACCGCCGGTGGTAAGTAAAT
CGACGAAAGAGAATGAGATCGACGAGATGGAGGCGTGGTTGGGCAGCTCA
CACATCGAGGGAATTGAGGAGCTGACCAGCTCGGAGTTTGACAAATTCCT
AGAGGAGAGAGCCGCTGCCGCCGAGAATCTTCCAACGATCAGTGCATCGA
ACTCCGCCGCCAGTGCCACGACAGGATCGGCAGGAGCCGATAGCTTACGA
AAGACACCAAAGAAACCGGGCGCCGAAGAGGATCTGCTCGCGCTCGCAAG
CTTTCTAGACCAT

BO07413.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-RB 1632 CG3529-PB 1..1629 17..1645 8145 100 Plus
CG3529-RD 1623 CG3529-PD 1..1620 17..1645 7975 99.4 Plus
CG3529-RC 1581 CG3529-PC 1..1383 17..1399 6915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-RB 2120 CG3529-RB 133..1761 17..1645 8145 100 Plus
CG3529-RD 2111 CG3529-RD 133..1752 17..1645 7975 99.4 Plus
CG3529-RC 2069 CG3529-RC 133..1515 17..1399 6915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9448900..9449628 535..1263 3645 100 Plus
3L 28110227 3L 9448386..9448839 82..535 2270 100 Plus
3L 28110227 3L 9450232..9450426 1451..1645 975 100 Plus
3L 28110227 3L 9449689..9449824 1264..1399 680 100 Plus
3L 28110227 3L 9446996..9447062 17..83 335 100 Plus
3L 28110227 3L 9450018..9450068 1400..1450 255 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:17:13 has no hits.

BO07413.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:48 Download gff for BO07413.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 1..1632 17..1648 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:52 Download gff for BO07413.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 114..1750 8..1645 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:53 Download gff for BO07413.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 133..1761 17..1647 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:48 Download gff for BO07413.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 114..1750 8..1645 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:45 Download gff for BO07413.complete
Subject Subject Range Query Range Percent Splice Strand
CG3529-RB 133..1761 17..1647 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:45 Download gff for BO07413.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9449689..9449824 1264..1399 100 -> Plus
3L 9450018..9450068 1400..1450 100 -> Plus
3L 9450232..9450426 1451..1647 98   Plus
3L 9446996..9447062 17..83 100 -> Plus
3L 9448388..9448839 84..535 100 -> Plus
3L 9448901..9449628 536..1263 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:53 Download gff for BO07413.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9440096..9440162 17..83 100 -> Plus
arm_3L 9441488..9441939 84..535 100 -> Plus
arm_3L 9442001..9442728 536..1263 100 -> Plus
arm_3L 9442789..9442924 1264..1399 100 -> Plus
arm_3L 9443118..9443168 1400..1450 100 -> Plus
arm_3L 9443332..9443526 1451..1647 98   Plus

BO07413.pep Sequence

Translation from 16 to 1663

> BO07413.pep
MASFFNVGALGNVFSTPVGQRIEAATDANLASENWAANMEICDMINESSD
TARDAMRAIRKRLSQNAGKNNQVVMYTLTVLETCVKNCGKAFHVLVAQKD
FINELVKLIGPKNDPPAAMQEKVLSLIQIWADAFKNQPDLNGVTQMYMEL
KNKGIEFPANDLDAMAPIYTPQRSVPEMPPQLVAAQQHTISPQHMAAAAA
AAAAAAAPPSTGPLHLTPEQAAKLRSELEIVSNNMSILSEMLSVLKPGQE
SPDDYALLNELTSTCKEMQSRIVDLIGRVQDDELTAEFLRINDELNNVFL
RHQRYEKNRSQGQGAGVTSPSAVLGAAMGLPGVGAAGAGATTVATLPPPP
TTTAVSNTPQSDQLLIDLIESSEEAQLPQSLGQISLGGGAPIGVQRSARP
ADEFDMLAQSRTDGNHKSDLLRDIPSVDAAAGSVTATASPYKPNQPQQAQ
RSAGEPPVVSKSTKENEIDEMEAWLGSSHIEGIEELTSSEFDKFLEERAA
AAENLPTISASNSAASATTGSAGADSLRKTPKKPGAEEDLLALASFLDH

BO07413.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3529-PB 543 CG3529-PB 1..543 1..543 2735 100 Plus
CG3529-PD 540 CG3529-PD 1..540 1..543 2708 99.4 Plus
CG3529-PC 526 CG3529-PC 1..526 1..543 2619 96.9 Plus
Stam-PA 689 CG6521-PA 7..173 15..187 200 27 Plus
Hrs-PC 760 CG2903-PC 1..149 13..165 177 30.5 Plus