Clone Sequence Records
BO07418.3prime Sequence
873 bp (765 high quality bases) assembled on 2006-01-06
> BO07418.3prime
ATGGTCTAGAAAGCTTGCGACAACGGTGAATACTGCACCCAAGGCGTAGT
GATCCGACCCCAGACGGTAATTGGGGATCTGTCCCGCCCCGATGCACCGG
TTGATTGAGGGCAGTGAGTAGACGCTGAGAGGCAAGAGCTTGTGCCTGCT
CCGCGATCCTAGCGAGCGCAGGATGTAGTCCACGATAACCCATTCGTTCT
GGTATGTGGAGGCAGTACCTTCGCCCGAATCGATGATCTCGAAATGCAGG
GGTTCTGGGCAAGCTGTGGAATCCACATCCCCATTCTTGCCAACGAGGAA
TTCAATAGGCGAGGAGTCGGGCAGACTGTTAAAGTCACCAGTCAGGACGA
TAGGTGTGTCGGTGGAGAACGACTGCAGCTCCTCCAAAATTCTTTCCACC
TGGGCGCAACGGACATCGCTCCGTTTCGTGTTGAACAGCAAGTGCGTGGT
GGCGACCACGAATTCCTTCTGCTGCTCCTGCTGCTTTTTGAATCGGAACC
TGGCAAACAAGGCCACATTGTCGCGATTGAGTAGAGCCACCGCCTGGTCG
TACAGCTCCACTGCTTGGTGGTCTAGCAACTCAAACTTTGAGGAGTCGTA
GACAATAGCGCATCCGTCCGTTCGACAGCCGGTCTTCTTTTTGTACACAT
AAGCCAACTTCTTGCCGTTGCCCATACGCAGTCGTTGGACGAGCACTGGA
AGGTGGTCGAACTGCATCTCCTGCAGGCACAGTATGTCCGGATCCAGTTT
GAGCAGTTCCCTGAGAAGGTTCTGCTGGCGGCGTTGCCAGCTGAGGAACT
CATGCGGGATCCCACGTACAGGAAGAGGTGCTCCAGAAGCAGATCCTGGG
CCAGGATGTTATATGAGACAACC
BO07418.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12273-PA | 1065 | angel-RA | 271..1062 | 810..19 | 3960 | 100 | Minus |
| CG12273-PA | 1065 | angel-RA | 207..270 | 873..810 | 320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| angel-RA | 1230 | CG12273-RA | 322..1177 | 873..19 | 4255 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23694324..23695179 | 873..19 | 4230 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-04 20:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3273..3422 | 717..557 | 120 | 58.4 | Minus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 5557..5620 | 717..654 | 113 | 64.1 | Minus |
BO07418.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:00 Download gff for
BO07418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-PA | 207..1065 | 18..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:54 Download gff for
BO07418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12273-PA | 207..1065 | 18..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:17 Download gff for
BO07418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 322..1177 | 19..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:49:19 Download gff for
BO07418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 322..1177 | 19..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:49:19 Download gff for
BO07418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23694324..23695179 | 19..873 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:17 Download gff for
BO07418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19581847..19582702 | 19..873 | 99 | | Minus |
BO07418.5prime Sequence
820 bp (776 high quality bases) assembled on 2006-01-06
> BO07418.5prime
GAAGTTATCAGTCGACATGTACAGGTCTCTGCTGCACAACGTTTCACTCA
AGGCGACATCAAGGATTATCAGGCGCAGCGTGAGCAGCCAGGCAAAAGGA
GCCAGCGGAAAGCGCAAACAAAAAGCGAAGGAGATGGAGTCGAGCCACGA
TCGGAATAGACGCTGGACGTCATTGGGGAATCAGGCTGAGGGTCGAGACC
CGCACAAGTGCTCCTCCTTCAAGGTTGTCTCATATAACATCCTGGCCCAG
GATCTGCTTCTGGAGCACCTCTTCCTGTACGTGGGAATCCCGCATGAGTT
CCTCAGCTGGCAACGCCGCCAGCAGAACCTTCTCAGGGAACTGCTCAAAC
TGGATCCGGACATACTGTGCCTGCAGGAGATGCAGTTCGACCACCTTCCA
GTGCTCGTCCAACGACTGCGTATGGGCAACGGCAAGAAGTTGGCTTATGT
GTACAAAAAGAAGACCGGCTGTCGAACGGACGGATGCGCTATTGTCTACG
ACTCCTCAAAGTTTGAGTTGCTAGACCACCAAGCAGTGGAGCTGTACGAC
CAGGCGGTGGCTCTACTCAATCGCGACAATGTGGCCTTGTTTGCCAGGTT
CCGATTCAAAAAGCAGCAGGAGCAGCAGAAGGAATTCGTGGTCGCCACCA
CGCACTTGCTGTTCAACACGAAACGGAGCGATGTCCGTTGCGCCCAGGTG
GAAAGAATTTTGGAGGAGCTGCAGTCGTTCTCCACCGACACACCTATCGT
CCTGACTGGTGACTTTAACAGTCTGCCCGACTCCTCGCCTATTGAATTCC
TCGTTGGGAAGAAATGGGGA
BO07418.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12273-PA | 1065 | angel-RA | 1..797 | 17..813 | 3960 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| angel-RA | 1230 | CG12273-RA | 116..918 | 17..820 | 3980 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23694118..23694914 | 17..813 | 3970 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-13 16:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3273..3422 | 380..540 | 120 | 58.4 | Plus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 5557..5620 | 380..443 | 113 | 64.1 | Plus |
BO07418.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:00 Download gff for
BO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-PA | 1..802 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:55 Download gff for
BO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12273-PA | 1..802 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:28 Download gff for
BO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 111..917 | 11..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:48:00 Download gff for
BO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 111..917 | 11..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:48:00 Download gff for
BO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23694113..23694919 | 11..819 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:28 Download gff for
BO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19581636..19582442 | 11..819 | 99 | | Plus |
BO07418.complete Sequence
1096 bp (1096 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630777
> BO07418.complete
GAAGTTATCAGTCGACATGTACAGGTCTCTGCTGCACAACGTTTCACTCA
AGGCGACATCAAGGATTATCAGGCGCAGCGTGAGCAGCCAGGCAAAAGGA
GCCAGCGGAAAGCGCAAACAAAAAGCGAAGGAGATGGAGTCGAGCCACGA
TCGGAATAGACGCTGGACGTCATTGGGGAATCAGGCTGAGGGTCGAGACC
CGCACAAGTGCTCCTCCTTCAAGGTTGTCTCATATAACATCCTGGCCCAG
GATCTGCTTCTGGAGCACCTCTTCCTGTACGTGGGAATCCCGCATGAGTT
CCTCAGCTGGCAACGCCGCCAGCAGAACCTTCTCAGGGAACTGCTCAAAC
TGGATCCGGACATACTGTGCCTGCAGGAGATGCAGTTCGACCACCTTCCA
GTGCTCGTCCAACGACTGCGTATGGGCAACGGCAAGAAGTTGGCTTATGT
GTACAAAAAGAAGACCGGCTGTCGAACGGACGGATGCGCTATTGTCTACG
ACTCCTCAAAGTTTGAGTTGCTAGACCACCAAGCAGTGGAGCTGTACGAC
CAGGCGGTGGCTCTACTCAATCGCGACAATGTGGCCTTGTTTGCCAGGTT
CCGATTCAAAAAGCAGCAGGAGCAGCAGAAGGAATTCGTGGTCGCCACCA
CGCACTTGCTGTTCAACACGAAACGGAGCGATGTCCGTTGCGCCCAGGTG
GAAAGAATTTTGGAGGAGCTGCAGTCGTTCTCCACCGACACACCTATCGT
CCTGACTGGTGACTTTAACAGTCTGCCCGACTCCTCGCCTATTGAATTCC
TCGTTGGCAAGAATGGGGATGTGGATTCCACAGCTTGCCCAGAACCCCTG
CATTTCGAGATCATCGATTCGGGCGAAGGTACTGCCTCCACATACCAGAA
CGAATGGGTTATCGTGGACTACATCCTGCGCTCGCTAGGATCGCGGAGCA
GGCACAAGCTCTTGCCTCTCAGCGTCTACTCACTGCCCTCAATCAACCGG
TGCATCGGGGCGGGACAGATCCCCAATTACCGTCTGGGGTCGGATCACTA
CGCCTTGGGTGCAGTATTCACCGTTGTCGCAAGCTTTCTAGACCAT
BO07418.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:57:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| angel-RA | 1065 | CG12273-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| angel-RA | 1230 | CG12273-RA | 116..1177 | 17..1078 | 5310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23694118..23695179 | 17..1078 | 5310 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3273..3422 | 380..540 | 120 | 58.4 | Plus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 5557..5620 | 380..443 | 113 | 64.1 | Plus |
BO07418.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:35 Download gff for
BO07418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 1..1065 | 17..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:34 Download gff for
BO07418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 116..1182 | 11..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:08 Download gff for
BO07418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 116..1177 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:36 Download gff for
BO07418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 116..1182 | 11..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:28 Download gff for
BO07418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| angel-RA | 116..1177 | 17..1080 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:28 Download gff for
BO07418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23694118..23695179 | 17..1080 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:08 Download gff for
BO07418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19581641..19582702 | 17..1080 | 99 | | Plus |
BO07418.pep Sequence
Translation from 16 to 1096
> BO07418.pep
MYRSLLHNVSLKATSRIIRRSVSSQAKGASGKRKQKAKEMESSHDRNRRW
TSLGNQAEGRDPHKCSSFKVVSYNILAQDLLLEHLFLYVGIPHEFLSWQR
RQQNLLRELLKLDPDILCLQEMQFDHLPVLVQRLRMGNGKKLAYVYKKKT
GCRTDGCAIVYDSSKFELLDHQAVELYDQAVALLNRDNVALFARFRFKKQ
QEQQKEFVVATTHLLFNTKRSDVRCAQVERILEELQSFSTDTPIVLTGDF
NSLPDSSPIEFLVGKNGDVDSTACPEPLHFEIIDSGEGTASTYQNEWVIV
DYILRSLGSRSRHKLLPLSVYSLPSINRCIGAGQIPNYRLGSDHYALGAV
FTVVASFLDH
BO07418.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| angel-PA | 354 | CG12273-PA | 1..354 | 1..354 | 1828 | 100 | Plus |
| cu-PH | 419 | CG31299-PH | 82..387 | 62..354 | 209 | 26.3 | Plus |
| cu-PF | 441 | CG31299-PF | 104..409 | 62..354 | 209 | 26.3 | Plus |
| cu-PE | 446 | CG31299-PE | 109..414 | 62..354 | 209 | 26.3 | Plus |
| cu-PC | 449 | CG31299-PC | 112..417 | 62..354 | 209 | 26.3 | Plus |
