Clone Sequence Records
BO07419.3prime Sequence
830 bp (829 high quality bases) assembled on 2006-01-06
> BO07419.3prime
ATGGTCTAGAAAGCTTGCTTCTGGCTTCTCTTTTAGCTCCAGTCTCTCAG
TTGACTCGCTATCCGGTTCCACCTGCTCCTCCTCGATGTTGCCATGCATT
ACATTGGGATTGGCCTTTAGCACAGAGCCACCGGTGAAGCCGAGGATGCC
ACATCCTACTGCCGCCAATCCTCCAGCTTTCATGCCCGCCACCAGACCAA
TGGGTCCTCCCACACAGGTGCCCAGAAGAGCTCCGACTACGGGGTACATG
GCCTTCTTGTAGGTGAGCGCCCGGCGCAGATTCAATTCGCCCTGCTGGAC
ATTCTCCAGAGCTTCCTCCGCATTGTCTGCTATCTTTTCCACCGCCACTG
ATTGCTCTGCAGTCAGTTGACGCATTCCCTGGAACATCCCGTGCAGATCG
TAGATCTCCTGTTGCAGGTTCTCCATCTGATCCAGGCAGGCTTGCCTCTG
CGCCAATTGGTGTTCCTCCAGCTGGAAATTGAGTTGCAGCTGGGGCATGT
GGCGGTGTGCGGGTAGACTGTTCATATCCACCTCCTGTGGCTGATTGTCC
AGATCGTCGTCGTACTGAGAACTCAAAGTGGAGGTGGGTGATTTGAGTTG
GAGCTCCGCAAATTCCTTCATGCCAGCGAAGGCAGTATCCCTGCCAGGTT
TCATTAGGTCGTCGAAACGTTCCAGATCCTCCTCCCGTACTTTTTCTCGC
AGTGCATCCATTTCCAGAAGTAGATTCTTGATCTGCTTAATGACCCTCAT
AGCATTGAGTTCCTCCTTTTTGATTTTTTGCCAGTCGCCGAGCGCCAGGC
TTTTTTCTATATTGCTGCGATGGTTTTTCA
BO07419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7452-PA | 906 | Syx17-RA | 92..903 | 830..19 | 4060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx17-RB | 1566 | CG7452-RB | 432..1243 | 830..19 | 4060 | 100 | Minus |
Syx17-RA | 1566 | CG7452-RA | 432..1243 | 830..19 | 4060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4404258..4404845 | 606..19 | 2940 | 100 | Minus |
3L | 28110227 | 3L | 4403973..4404197 | 830..606 | 1125 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:22:56 has no hits.
BO07419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:01 Download gff for
BO07419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-PA | 93..906 | 16..829 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:57 Download gff for
BO07419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7452-PA | 93..906 | 16..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:29 Download gff for
BO07419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 433..1243 | 19..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:48:27 Download gff for
BO07419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 433..1243 | 19..829 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:48:27 Download gff for
BO07419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4403974..4404197 | 606..829 | 100 | -> | Minus |
3L | 4404259..4404845 | 19..605 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:29 Download gff for
BO07419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4403974..4404197 | 606..829 | 100 | -> | Minus |
arm_3L | 4404259..4404845 | 19..605 | 100 | | Minus |
BO07419.5prime Sequence
910 bp (755 high quality bases) assembled on 2006-01-06
> BO07419.5prime
GAAGTTATCAGTCGACATGACGCGCGATGAGAAACTGCCACTTAAACAGG
CGGAGGTCTCCATCCAAAGGTTTCAGGATGTGGCGGTGCCCCACCATCTG
AGCCTACTGAAAAACCATCGCAGCAATATAGAAAAAAGCCTGGCGCTCGG
CGACTGGCAAAAAATCAAAAAGGAGGAACTCAATGCTATGAGGGTCATTA
AGCAGATCAAGAATCTACTTCTGGAAATGGATGCACTGCGAGAAAAAGTA
CGGGAGGAGGATCTGGAACGTTTCGACGACCTAATGAAACCTGGCAGGGA
TACTGCCTTCGCTGGCATGAAGGAATTTGCGGAGCTCCAACTCAAATCAC
CCACCTCCACTTTGAGTTCTCAGTACGACGACGATCTGGACAATCAGCCA
CAGGAGGTGGATATGAACAGTCTACCCGCACACCGCCACATGCCCCAGCT
GCAACTCAATTTCCAGCTGGAGGAACACCAATTGGCGCAGAGGCAAGCCT
GCCTGGATCAGATGGAGAACCTGCAACAGGAGATCTACGATCTGCACGGG
ATGTTCCAGGGAATGCGTCAACTGACTGCAGAGCAATCAGTGGCGGTGGA
AAAGATAGCAGACAATGCGGAGGAAGCTCTGGAGAATGTCCAGCAGGGCG
AATTGAATCTGCGCCGGGCGCTCACCTACAAGAAGGCCATGTACCCCGTA
GTCGGAGCTCTTCTGGGCACCTGTGTGGGAGGACCCATTGGTCTGGTGGC
GGGCATGAAAGCTGGAGGATTGGCGGCAGTAGGATGTGGCATCCTCGGCT
TCACCGGTGGCTCTGTGCTAAAGGCCAATCCCAATGTAATGCATGGCAAC
ATCGAGGAGGAGCAGGTGGAACCGGATAGCGAGTCAACTGAGAGACTGGA
GCTAAAAGAG
BO07419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7452-PA | 906 | Syx17-RA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx17-RB | 1566 | CG7452-RB | 341..1234 | 17..910 | 4470 | 100 | Plus |
Syx17-RA | 1566 | CG7452-RA | 341..1234 | 17..910 | 4470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:53:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4404258..4404836 | 332..910 | 2895 | 100 | Plus |
3L | 28110227 | 3L | 4403950..4404197 | 85..332 | 1240 | 100 | Plus |
3L | 28110227 | 3L | 4403827..4403897 | 17..87 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:53:11 has no hits.
BO07419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:02 Download gff for
BO07419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:58 Download gff for
BO07419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7452-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:05:15 Download gff for
BO07419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 325..1234 | 2..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:37:37 Download gff for
BO07419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 325..1234 | 2..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:37:37 Download gff for
BO07419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4403811..4403895 | 2..85 | 94 | -> | Plus |
3L | 4403951..4404197 | 86..332 | 100 | -> | Plus |
3L | 4404259..4404836 | 333..910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:05:15 Download gff for
BO07419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4403811..4403895 | 2..85 | 94 | -> | Plus |
arm_3L | 4403951..4404197 | 86..332 | 100 | -> | Plus |
arm_3L | 4404259..4404836 | 333..910 | 100 | | Plus |
BO07419.complete Sequence
937 bp (937 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630778
> BO07419.complete
GAAGTTATCAGTCGACATGACGCGCGATGAGAAACTGCCACTTAAACAGG
CGGAGGTCTCCATCCAAAGGTTTCAGGATGTGGCGGTGCCCCACCATCTG
AGCCTACTGAAAAACCATCGCAGCAATATAGAAAAAAGCCTGGCGCTCGG
CGACTGGCAAAAAATCAAAAAGGAGGAACTCAATGCTATGAGGGTCATTA
AGCAGATCAAGAATCTACTTCTGGAAATGGATGCACTGCGAGAAAAAGTA
CGGGAGGAGGATCTGGAACGTTTCGACGACCTAATGAAACCTGGCAGGGA
TACTGCCTTCGCTGGCATGAAGGAATTTGCGGAGCTCCAACTCAAATCAC
CCACCTCCACTTTGAGTTCTCAGTACGACGACGATCTGGACAATCAGCCA
CAGGAGGTGGATATGAACAGTCTACCCGCACACCGCCACATGCCCCAGCT
GCAACTCAATTTCCAGCTGGAGGAACACCAATTGGCGCAGAGGCAAGCCT
GCCTGGATCAGATGGAGAACCTGCAACAGGAGATCTACGATCTGCACGGG
ATGTTCCAGGGAATGCGTCAACTGACTGCAGAGCAATCAGTGGCGGTGGA
AAAGATAGCAGACAATGCGGAGGAAGCTCTGGAGAATGTCCAGCAGGGCG
AATTGAATCTGCGCCGGGCGCTCACCTACAAGAAGGCCATGTACCCCGTA
GTCGGAGCTCTTCTGGGCACCTGTGTGGGAGGACCCATTGGTCTGGTGGC
GGGCATGAAAGCTGGAGGATTGGCGGCAGTAGGATGTGGCATCCTCGGCT
TCACCGGTGGCTCTGTGCTAAAGGCCAATCCCAATGTAATGCATGGCAAC
ATCGAGGAGGAGCAGGTGGAACCGGATAGCGAGTCAACTGAGAGACTGGA
GCTAAAAGAGAAGCCAGAAGCAAGCTTTCTAGACCAT
BO07419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx17-RB | 1041 | CG7452-PB | 1..903 | 17..919 | 4515 | 100 | Plus |
Syx17-RA | 906 | CG7452-PA | 1..903 | 17..919 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx17-RB | 1566 | CG7452-RB | 341..1243 | 17..919 | 4515 | 100 | Plus |
Syx17-RA | 1566 | CG7452-RA | 341..1243 | 17..919 | 4515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4404258..4404845 | 332..919 | 2940 | 100 | Plus |
3L | 28110227 | 3L | 4403950..4404197 | 85..332 | 1240 | 100 | Plus |
3L | 28110227 | 3L | 4403827..4403897 | 17..87 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:42:12 has no hits.
BO07419.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:37 Download gff for
BO07419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:36 Download gff for
BO07419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 312..1230 | 2..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:12 Download gff for
BO07419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 341..1243 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:37 Download gff for
BO07419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 312..1230 | 2..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:03 Download gff for
BO07419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx17-RA | 341..1243 | 17..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:03 Download gff for
BO07419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4403951..4404197 | 86..332 | 100 | -> | Plus |
3L | 4403827..4403895 | 17..85 | 100 | -> | Plus |
3L | 4404259..4404845 | 333..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:12 Download gff for
BO07419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4403827..4403895 | 17..85 | 100 | -> | Plus |
arm_3L | 4403951..4404197 | 86..332 | 100 | -> | Plus |
arm_3L | 4404259..4404845 | 333..921 | 99 | | Plus |
BO07419.pep Sequence
Translation from 16 to 937
> BO07419.pep
MTRDEKLPLKQAEVSIQRFQDVAVPHHLSLLKNHRSNIEKSLALGDWQKI
KKEELNAMRVIKQIKNLLLEMDALREKVREEDLERFDDLMKPGRDTAFAG
MKEFAELQLKSPTSTLSSQYDDDLDNQPQEVDMNSLPAHRHMPQLQLNFQ
LEEHQLAQRQACLDQMENLQQEIYDLHGMFQGMRQLTAEQSVAVEKIADN
AEEALENVQQGELNLRRALTYKKAMYPVVGALLGTCVGGPIGLVAGMKAG
GLAAVGCGILGFTGGSVLKANPNVMHGNIEEEQVEPDSESTERLELKEKP
EASFLDH
BO07419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx17-PA | 301 | CG7452-PA | 1..301 | 1..301 | 1534 | 100 | Plus |
Syx17-PB | 346 | CG7452-PB | 1..301 | 1..301 | 1534 | 100 | Plus |