Clone BO07420 Report

Search the DGRC for BO07420

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG8336-RA
Protein status:BO07420.pep: validated full length
Sequenced Size:1183

Clone Sequence Records

BO07420.3prime Sequence

886 bp (787 high quality bases) assembled on 2006-01-06

> BO07420.3prime
ATGGTCTAGAAAGCTTGCGGCAAAAAGATTTTTAAGGGCATTTCGTTGTT
GTCGGTTGTACTGGGCCAGGAGCTGCTTGGTGCTGTTCAGTTCATTTAGG
ATCTGTTTATTCTCCGGCAGGAGATTGTGAGCCGTTTTCAGATCGTTTAT
GGCCTCCTCGTAGTTGCGCAATCCGCGCTGCGCCTGGGCGCGTCGATAGA
AAGCCTTGCTACATTTCGGATCTAGACGAATGGCTTCGTTGCAAACTTCT
CTAGCGCTCGTATAGTTGCCAACTTTTAGGTCCACAGCGGCTGCATTAAT
GTTGTTTACCACGGAGAAGCCGTCGACCTTGAGCAGATCCTCATCTACAA
GGTGTTTTTTGAGAGGATTCAGCTGCTGCCAACCGAACTGTCTGCTCAGG
TAATGATAGTATCGATTCGCCTTGCGATATTTTGCCCGTGCTTCGTGATA
GCGTCCAAGCTGATAGAAGTGATTGCCCGATTGGCGAATGCCCGTGAGAA
GTTCCACCGCCCCATCTCCTGTGAACTTGTCGAGCTTGCGCGGCCAGTCT
TGGGGATAGGCAGGCAACTTGTCCGTCGTCTCGTCGTTGCACTCGATGCC
CCAGTCCTCGTTGTGAGCTATCTCTCCGCAGTCCCGTATCACGATCGGCG
CCGTGGGATCGCCCTCGTCAGTGCAGTTTTGTTCCATTTCAGCTACGATA
CCCAGGCCGCGTAAAACACGACCTACGACTACGTTTGTTCCATTCAGATT
TTCACAGCCCGCGGCGGAAATGAAAAACTGCGAGTTGTTGGAGTTTGGCT
TGCCGTAGTTGGCCATGCTGACCACGCCCTCTTCGTTGTGTGAGAGTTCA
AAGTTCTCGTCATCGAAAACTGGTCCGTAGATGCTC

BO07420.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-PB 1152 CG8336-RB 282..1149 886..19 4315 99.8 Minus
CG8336-PA 1152 CG8336-RA 282..1149 886..19 4315 99.8 Minus
CG8336-PC 1152 CG8336-RC 282..1149 886..19 4315 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-RD 1395 CG8336-RD 426..1293 886..19 4325 99.9 Minus
CG8336-RC 1445 CG8336-RC 476..1343 886..19 4325 99.9 Minus
CG8336-RA 1500 CG8336-RA 531..1398 886..19 4325 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9631193..9631693 519..19 2505 100 Minus
3L 28110227 3L 9630818..9631139 840..519 1610 100 Minus
3L 28110227 3L 9630579..9630624 886..841 215 97.8 Minus
Blast to na_te.dros performed on 2015-02-11 05:15:22 has no hits.

BO07420.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:03 Download gff for BO07420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-PA 282..1152 18..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:00 Download gff for BO07420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-PC 282..1152 18..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:22:09 Download gff for BO07420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 531..1403 12..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:10 Download gff for BO07420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 531..1403 12..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:10 Download gff for BO07420.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9630579..9630624 841..886 97 -> Minus
3L 9630818..9631138 520..840 100 -> Minus
3L 9631193..9631698 12..519 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:22:09 Download gff for BO07420.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9623679..9623724 841..886 97 -> Minus
arm_3L 9623918..9624238 520..840 100 -> Minus
arm_3L 9624293..9624798 12..519 99   Minus

BO07420.5prime Sequence

834 bp (790 high quality bases) assembled on 2006-01-06

> BO07420.5prime
GAAGTTATCAGTCGACATGGAAGAACGCAAGCTGCTCCGCGCGGTGAAAT
CAACTAATCCACTGGTCTACCTGGACATTTCCATTGGCAAGGAGGATGCG
GGTCGAATGATAATTGAACTGCGCAAGGATGTTGTGCCGAAGACAGCGGA
AAATTTCCGTGCCCTGTGCACGGGCGAATGTGGTATCGGTACTCTGGGCA
AACCGCTCCACTACAAGGGCACAAAGTTCCACAAGATCAAGCGAGTCTTC
GTCGTCCAGAGTGGGGATGTGGTGAAGAACGATGGAAGCAGCGGCGAGAG
CATCTACGGACCAGTTTTCGATGACGAGAACTTCGAACTCTCACACAACG
AAGAGGGCGTGGTCAGCATGGCCAACTACGGCAAGCCAAACTCCAACAAC
TCGCAGTTTTTCATTTCCGCCGCGGGCTGTGAAAATCTGAATGGAACAAA
CGTAGTCGTAGGTCGTGTTTTACGCGGCCTGGGTATCGTAGCTGAAATGG
AACAAAACTGCACTGACGAGGGCGATCCCACGGCGCCGATCGTGATACGG
GACTGCGGAGAGATAGCTCACAACGAGGACTGGGGCATCGAGTGCAACGA
CGAGACGACGGACAAGTTGCCTGCCTATCCCCAAGACTGGCCGCGCAAGC
TCGACAAGTTCACAGGAGATGGGGCGGTGGAACTTCTCACGGGCATTCGC
CAATCGGGCAATCACTTCTATCAGCTTGGACGCTATCACGAAGCACGGGC
AAAATATCGCAAGGCGAATCGATACTATCATTACCTGAGCAGACAGTTCG
GTTGGCAGCAGCTGAATCCTCTCAAAAAACACCT

BO07420.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-PB 1152 CG8336-RB 1..818 17..834 4090 100 Plus
CG8336-PA 1152 CG8336-RA 1..818 17..834 4090 100 Plus
CG8336-PC 1152 CG8336-RC 1..818 17..834 4090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-RD 1395 CG8336-RD 145..962 17..834 4090 100 Plus
CG8336-RC 1445 CG8336-RC 195..1012 17..834 4090 100 Plus
CG8336-RA 1500 CG8336-RA 250..1067 17..834 4090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9630818..9631139 344..665 1610 100 Plus
3L 28110227 3L 9630379..9630624 98..343 1230 100 Plus
3L 28110227 3L 9631193..9631362 665..834 850 100 Plus
3L 28110227 3L 9630221..9630302 17..98 410 100 Plus
Blast to na_te.dros performed on 2015-02-11 21:56:01 has no hits.

BO07420.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:04 Download gff for BO07420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:01 Download gff for BO07420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-PC 1..818 17..834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:22 Download gff for BO07420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 250..1067 17..834 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:45:47 Download gff for BO07420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 250..1067 17..834 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:45:47 Download gff for BO07420.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9630818..9631138 344..664 100 -> Plus
3L 9631193..9631362 665..834 100   Plus
3L 9630221..9630302 17..98 100 -> Plus
3L 9630380..9630624 99..343 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:22 Download gff for BO07420.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9623321..9623402 17..98 100 -> Plus
arm_3L 9623480..9623724 99..343 100 -> Plus
arm_3L 9623918..9624238 344..664 100 -> Plus
arm_3L 9624293..9624462 665..834 100   Plus

BO07420.complete Sequence

1183 bp (1183 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630779

> BO07420.complete
GAAGTTATCAGTCGACATGGAAGAACGCAAGCTGCTCCGCGCGGTGAAAT
CAACTAATCCACTGGTCTACCTGGACATTTCCATTGGCAAGGAGGATGCG
GGTCGAATGATAATTGAACTGCGCAAGGATGTTGTGCCGAAGACAGCGGA
AAATTTCCGTGCCCTGTGCACGGGCGAATGTGGTATCGGTACTCTGGGCA
AACCGCTCCACTACAAGGGCACAAAGTTCCACAAGATCAAGCGAGTCTTC
GTCGTCCAGAGTGGGGATGTGGTGAAGAACGATGGAAGCAGCGGCGAGAG
CATCTACGGACCAGTTTTCGATGACGAGAACTTCGAACTCTCACACAACG
AAGAGGGCGTGGTCAGCATGGCCAACTACGGCAAGCCAAACTCCAACAAC
TCGCAGTTTTTCATTTCCGCCGCGGGCTGTGAAAATCTGAATGGAACAAA
CGTAGTCGTAGGTCGTGTTTTACGCGGCCTGGGTATCGTAGCTGAAATGG
AACAAAACTGCACTGACGAGGGCGATCCCACGGCGCCGATCGTGATACGG
GACTGCGGAGAGATAGCTCACAACGAGGACTGGGGCATCGAGTGCAACGA
CGAGACGACGGACAAGTTGCCTGCCTATCCCCAAGACTGGCCGCGCAAGC
TCGACAAGTTCACAGGAGATGGGGCGGTGGAACTTCTCACGGGCATTCGC
CAATCGGGCAATCACTTCTATCAGCTTGGACGCTATCACGAAGCACGGGC
AAAATATCGCAAGGCGAATCGATACTATCATTACCTGAGCAGACAGTTCG
GTTGGCAGCAGCTGAATCCTCTCAAAAAACACCTTGTAGATGAGGATCTG
CTCAAGGTCGACGGCTTCTCCGTGGTAAACAACATTAATGCAGCCGCTGT
GGACCTAAAAGTTGGCAACTATACGAGCGCTAGAGAAGTTTGCAACGAAG
CCATTCGTCTAGATCCGAAATGTAGCAAGGCTTTCTATCGACGCGCCCAG
GCGCAGCGCGGATTGCGCAACTACGAGGAGGCCATAAACGATCTGAAAAC
GGCTCACAATCTCCTGCCGGAGAATAAACAGATCCTAAATGAACTGAACA
GCACCAAGCAGCTCCTGGCCCAGTACAACCGACAACAACGAAATGCCCTT
AAAAATCTTTTTGCCGCAAGCTTTCTAGACCAT

BO07420.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-RD 1152 CG8336-PD 1..1149 17..1165 5745 100 Plus
CG8336-RC 1152 CG8336-PC 1..1149 17..1165 5745 100 Plus
CG8336-RA 1152 CG8336-PA 1..1149 17..1165 5745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-RD 1395 CG8336-RD 145..1293 17..1165 5745 100 Plus
CG8336-RC 1445 CG8336-RC 195..1343 17..1165 5745 100 Plus
CG8336-RA 1500 CG8336-RA 250..1398 17..1165 5745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9631193..9631693 665..1165 2505 100 Plus
3L 28110227 3L 9630818..9631139 344..665 1610 100 Plus
3L 28110227 3L 9630379..9630624 98..343 1230 100 Plus
3L 28110227 3L 9630221..9630302 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:19:14 has no hits.

BO07420.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:38 Download gff for BO07420.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RC 1..1152 17..1166 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:38 Download gff for BO07420.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RC 193..1346 17..1172 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:27:50 Download gff for BO07420.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 250..1398 17..1167 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:38 Download gff for BO07420.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RC 193..1346 17..1172 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:43 Download gff for BO07420.complete
Subject Subject Range Query Range Percent Splice Strand
CG8336-RA 250..1398 17..1167 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:43 Download gff for BO07420.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9630221..9630302 17..98 100 -> Plus
3L 9630380..9630624 99..343 100 -> Plus
3L 9630818..9631138 344..664 100 -> Plus
3L 9631193..9631693 665..1167 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:27:50 Download gff for BO07420.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9623321..9623402 17..98 100 -> Plus
arm_3L 9623480..9623724 99..343 100 -> Plus
arm_3L 9623918..9624238 344..664 100 -> Plus
arm_3L 9624293..9624793 665..1167 99   Plus

BO07420.pep Sequence

Translation from 16 to 1183

> BO07420.pep
MEERKLLRAVKSTNPLVYLDISIGKEDAGRMIIELRKDVVPKTAENFRAL
CTGECGIGTLGKPLHYKGTKFHKIKRVFVVQSGDVVKNDGSSGESIYGPV
FDDENFELSHNEEGVVSMANYGKPNSNNSQFFISAAGCENLNGTNVVVGR
VLRGLGIVAEMEQNCTDEGDPTAPIVIRDCGEIAHNEDWGIECNDETTDK
LPAYPQDWPRKLDKFTGDGAVELLTGIRQSGNHFYQLGRYHEARAKYRKA
NRYYHYLSRQFGWQQLNPLKKHLVDEDLLKVDGFSVVNNINAAAVDLKVG
NYTSAREVCNEAIRLDPKCSKAFYRRAQAQRGLRNYEEAINDLKTAHNLL
PENKQILNELNSTKQLLAQYNRQQRNALKNLFAASFLDH

BO07420.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8336-PD 383 CG8336-PD 1..383 1..383 2021 100 Plus
CG8336-PC 383 CG8336-PC 1..383 1..383 2021 100 Plus
CG8336-PA 383 CG8336-PA 1..383 1..383 2021 100 Plus
CG8336-PB 383 CG8336-PB 1..383 1..383 2021 100 Plus
CG17266-PB 183 CG17266-PB 14..183 12..183 398 48 Plus