Clone Sequence Records
BO07420.3prime Sequence
886 bp (787 high quality bases) assembled on 2006-01-06
> BO07420.3prime
ATGGTCTAGAAAGCTTGCGGCAAAAAGATTTTTAAGGGCATTTCGTTGTT
GTCGGTTGTACTGGGCCAGGAGCTGCTTGGTGCTGTTCAGTTCATTTAGG
ATCTGTTTATTCTCCGGCAGGAGATTGTGAGCCGTTTTCAGATCGTTTAT
GGCCTCCTCGTAGTTGCGCAATCCGCGCTGCGCCTGGGCGCGTCGATAGA
AAGCCTTGCTACATTTCGGATCTAGACGAATGGCTTCGTTGCAAACTTCT
CTAGCGCTCGTATAGTTGCCAACTTTTAGGTCCACAGCGGCTGCATTAAT
GTTGTTTACCACGGAGAAGCCGTCGACCTTGAGCAGATCCTCATCTACAA
GGTGTTTTTTGAGAGGATTCAGCTGCTGCCAACCGAACTGTCTGCTCAGG
TAATGATAGTATCGATTCGCCTTGCGATATTTTGCCCGTGCTTCGTGATA
GCGTCCAAGCTGATAGAAGTGATTGCCCGATTGGCGAATGCCCGTGAGAA
GTTCCACCGCCCCATCTCCTGTGAACTTGTCGAGCTTGCGCGGCCAGTCT
TGGGGATAGGCAGGCAACTTGTCCGTCGTCTCGTCGTTGCACTCGATGCC
CCAGTCCTCGTTGTGAGCTATCTCTCCGCAGTCCCGTATCACGATCGGCG
CCGTGGGATCGCCCTCGTCAGTGCAGTTTTGTTCCATTTCAGCTACGATA
CCCAGGCCGCGTAAAACACGACCTACGACTACGTTTGTTCCATTCAGATT
TTCACAGCCCGCGGCGGAAATGAAAAACTGCGAGTTGTTGGAGTTTGGCT
TGCCGTAGTTGGCCATGCTGACCACGCCCTCTTCGTTGTGTGAGAGTTCA
AAGTTCTCGTCATCGAAAACTGGTCCGTAGATGCTC
BO07420.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8336-PB | 1152 | CG8336-RB | 282..1149 | 886..19 | 4315 | 99.8 | Minus |
CG8336-PA | 1152 | CG8336-RA | 282..1149 | 886..19 | 4315 | 99.8 | Minus |
CG8336-PC | 1152 | CG8336-RC | 282..1149 | 886..19 | 4315 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:15:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8336-RD | 1395 | CG8336-RD | 426..1293 | 886..19 | 4325 | 99.9 | Minus |
CG8336-RC | 1445 | CG8336-RC | 476..1343 | 886..19 | 4325 | 99.9 | Minus |
CG8336-RA | 1500 | CG8336-RA | 531..1398 | 886..19 | 4325 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9631193..9631693 | 519..19 | 2505 | 100 | Minus |
3L | 28110227 | 3L | 9630818..9631139 | 840..519 | 1610 | 100 | Minus |
3L | 28110227 | 3L | 9630579..9630624 | 886..841 | 215 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:15:22 has no hits.
BO07420.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:03 Download gff for
BO07420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-PA | 282..1152 | 18..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:00 Download gff for
BO07420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-PC | 282..1152 | 18..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:22:09 Download gff for
BO07420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RA | 531..1403 | 12..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:10 Download gff for
BO07420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RA | 531..1403 | 12..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:10 Download gff for
BO07420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9630579..9630624 | 841..886 | 97 | -> | Minus |
3L | 9630818..9631138 | 520..840 | 100 | -> | Minus |
3L | 9631193..9631698 | 12..519 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:22:09 Download gff for
BO07420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9623679..9623724 | 841..886 | 97 | -> | Minus |
arm_3L | 9623918..9624238 | 520..840 | 100 | -> | Minus |
arm_3L | 9624293..9624798 | 12..519 | 99 | | Minus |
BO07420.5prime Sequence
834 bp (790 high quality bases) assembled on 2006-01-06
> BO07420.5prime
GAAGTTATCAGTCGACATGGAAGAACGCAAGCTGCTCCGCGCGGTGAAAT
CAACTAATCCACTGGTCTACCTGGACATTTCCATTGGCAAGGAGGATGCG
GGTCGAATGATAATTGAACTGCGCAAGGATGTTGTGCCGAAGACAGCGGA
AAATTTCCGTGCCCTGTGCACGGGCGAATGTGGTATCGGTACTCTGGGCA
AACCGCTCCACTACAAGGGCACAAAGTTCCACAAGATCAAGCGAGTCTTC
GTCGTCCAGAGTGGGGATGTGGTGAAGAACGATGGAAGCAGCGGCGAGAG
CATCTACGGACCAGTTTTCGATGACGAGAACTTCGAACTCTCACACAACG
AAGAGGGCGTGGTCAGCATGGCCAACTACGGCAAGCCAAACTCCAACAAC
TCGCAGTTTTTCATTTCCGCCGCGGGCTGTGAAAATCTGAATGGAACAAA
CGTAGTCGTAGGTCGTGTTTTACGCGGCCTGGGTATCGTAGCTGAAATGG
AACAAAACTGCACTGACGAGGGCGATCCCACGGCGCCGATCGTGATACGG
GACTGCGGAGAGATAGCTCACAACGAGGACTGGGGCATCGAGTGCAACGA
CGAGACGACGGACAAGTTGCCTGCCTATCCCCAAGACTGGCCGCGCAAGC
TCGACAAGTTCACAGGAGATGGGGCGGTGGAACTTCTCACGGGCATTCGC
CAATCGGGCAATCACTTCTATCAGCTTGGACGCTATCACGAAGCACGGGC
AAAATATCGCAAGGCGAATCGATACTATCATTACCTGAGCAGACAGTTCG
GTTGGCAGCAGCTGAATCCTCTCAAAAAACACCT
BO07420.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8336-PB | 1152 | CG8336-RB | 1..818 | 17..834 | 4090 | 100 | Plus |
CG8336-PA | 1152 | CG8336-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
CG8336-PC | 1152 | CG8336-RC | 1..818 | 17..834 | 4090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8336-RD | 1395 | CG8336-RD | 145..962 | 17..834 | 4090 | 100 | Plus |
CG8336-RC | 1445 | CG8336-RC | 195..1012 | 17..834 | 4090 | 100 | Plus |
CG8336-RA | 1500 | CG8336-RA | 250..1067 | 17..834 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9630818..9631139 | 344..665 | 1610 | 100 | Plus |
3L | 28110227 | 3L | 9630379..9630624 | 98..343 | 1230 | 100 | Plus |
3L | 28110227 | 3L | 9631193..9631362 | 665..834 | 850 | 100 | Plus |
3L | 28110227 | 3L | 9630221..9630302 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 21:56:01 has no hits.
BO07420.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:04 Download gff for
BO07420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:01 Download gff for
BO07420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-PC | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:22 Download gff for
BO07420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RA | 250..1067 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:45:47 Download gff for
BO07420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RA | 250..1067 | 17..834 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:45:47 Download gff for
BO07420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9630818..9631138 | 344..664 | 100 | -> | Plus |
3L | 9631193..9631362 | 665..834 | 100 | | Plus |
3L | 9630221..9630302 | 17..98 | 100 | -> | Plus |
3L | 9630380..9630624 | 99..343 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:22 Download gff for
BO07420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9623321..9623402 | 17..98 | 100 | -> | Plus |
arm_3L | 9623480..9623724 | 99..343 | 100 | -> | Plus |
arm_3L | 9623918..9624238 | 344..664 | 100 | -> | Plus |
arm_3L | 9624293..9624462 | 665..834 | 100 | | Plus |
BO07420.complete Sequence
1183 bp (1183 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630779
> BO07420.complete
GAAGTTATCAGTCGACATGGAAGAACGCAAGCTGCTCCGCGCGGTGAAAT
CAACTAATCCACTGGTCTACCTGGACATTTCCATTGGCAAGGAGGATGCG
GGTCGAATGATAATTGAACTGCGCAAGGATGTTGTGCCGAAGACAGCGGA
AAATTTCCGTGCCCTGTGCACGGGCGAATGTGGTATCGGTACTCTGGGCA
AACCGCTCCACTACAAGGGCACAAAGTTCCACAAGATCAAGCGAGTCTTC
GTCGTCCAGAGTGGGGATGTGGTGAAGAACGATGGAAGCAGCGGCGAGAG
CATCTACGGACCAGTTTTCGATGACGAGAACTTCGAACTCTCACACAACG
AAGAGGGCGTGGTCAGCATGGCCAACTACGGCAAGCCAAACTCCAACAAC
TCGCAGTTTTTCATTTCCGCCGCGGGCTGTGAAAATCTGAATGGAACAAA
CGTAGTCGTAGGTCGTGTTTTACGCGGCCTGGGTATCGTAGCTGAAATGG
AACAAAACTGCACTGACGAGGGCGATCCCACGGCGCCGATCGTGATACGG
GACTGCGGAGAGATAGCTCACAACGAGGACTGGGGCATCGAGTGCAACGA
CGAGACGACGGACAAGTTGCCTGCCTATCCCCAAGACTGGCCGCGCAAGC
TCGACAAGTTCACAGGAGATGGGGCGGTGGAACTTCTCACGGGCATTCGC
CAATCGGGCAATCACTTCTATCAGCTTGGACGCTATCACGAAGCACGGGC
AAAATATCGCAAGGCGAATCGATACTATCATTACCTGAGCAGACAGTTCG
GTTGGCAGCAGCTGAATCCTCTCAAAAAACACCTTGTAGATGAGGATCTG
CTCAAGGTCGACGGCTTCTCCGTGGTAAACAACATTAATGCAGCCGCTGT
GGACCTAAAAGTTGGCAACTATACGAGCGCTAGAGAAGTTTGCAACGAAG
CCATTCGTCTAGATCCGAAATGTAGCAAGGCTTTCTATCGACGCGCCCAG
GCGCAGCGCGGATTGCGCAACTACGAGGAGGCCATAAACGATCTGAAAAC
GGCTCACAATCTCCTGCCGGAGAATAAACAGATCCTAAATGAACTGAACA
GCACCAAGCAGCTCCTGGCCCAGTACAACCGACAACAACGAAATGCCCTT
AAAAATCTTTTTGCCGCAAGCTTTCTAGACCAT
BO07420.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:19:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8336-RD | 1152 | CG8336-PD | 1..1149 | 17..1165 | 5745 | 100 | Plus |
CG8336-RC | 1152 | CG8336-PC | 1..1149 | 17..1165 | 5745 | 100 | Plus |
CG8336-RA | 1152 | CG8336-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8336-RD | 1395 | CG8336-RD | 145..1293 | 17..1165 | 5745 | 100 | Plus |
CG8336-RC | 1445 | CG8336-RC | 195..1343 | 17..1165 | 5745 | 100 | Plus |
CG8336-RA | 1500 | CG8336-RA | 250..1398 | 17..1165 | 5745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9631193..9631693 | 665..1165 | 2505 | 100 | Plus |
3L | 28110227 | 3L | 9630818..9631139 | 344..665 | 1610 | 100 | Plus |
3L | 28110227 | 3L | 9630379..9630624 | 98..343 | 1230 | 100 | Plus |
3L | 28110227 | 3L | 9630221..9630302 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:19:14 has no hits.
BO07420.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:38 Download gff for
BO07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RC | 1..1152 | 17..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:38 Download gff for
BO07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RC | 193..1346 | 17..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:27:50 Download gff for
BO07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RA | 250..1398 | 17..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:38 Download gff for
BO07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RC | 193..1346 | 17..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:43 Download gff for
BO07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8336-RA | 250..1398 | 17..1167 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:43 Download gff for
BO07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9630221..9630302 | 17..98 | 100 | -> | Plus |
3L | 9630380..9630624 | 99..343 | 100 | -> | Plus |
3L | 9630818..9631138 | 344..664 | 100 | -> | Plus |
3L | 9631193..9631693 | 665..1167 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:27:50 Download gff for
BO07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9623321..9623402 | 17..98 | 100 | -> | Plus |
arm_3L | 9623480..9623724 | 99..343 | 100 | -> | Plus |
arm_3L | 9623918..9624238 | 344..664 | 100 | -> | Plus |
arm_3L | 9624293..9624793 | 665..1167 | 99 | | Plus |
BO07420.pep Sequence
Translation from 16 to 1183
> BO07420.pep
MEERKLLRAVKSTNPLVYLDISIGKEDAGRMIIELRKDVVPKTAENFRAL
CTGECGIGTLGKPLHYKGTKFHKIKRVFVVQSGDVVKNDGSSGESIYGPV
FDDENFELSHNEEGVVSMANYGKPNSNNSQFFISAAGCENLNGTNVVVGR
VLRGLGIVAEMEQNCTDEGDPTAPIVIRDCGEIAHNEDWGIECNDETTDK
LPAYPQDWPRKLDKFTGDGAVELLTGIRQSGNHFYQLGRYHEARAKYRKA
NRYYHYLSRQFGWQQLNPLKKHLVDEDLLKVDGFSVVNNINAAAVDLKVG
NYTSAREVCNEAIRLDPKCSKAFYRRAQAQRGLRNYEEAINDLKTAHNLL
PENKQILNELNSTKQLLAQYNRQQRNALKNLFAASFLDH
BO07420.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8336-PD | 383 | CG8336-PD | 1..383 | 1..383 | 2021 | 100 | Plus |
CG8336-PC | 383 | CG8336-PC | 1..383 | 1..383 | 2021 | 100 | Plus |
CG8336-PA | 383 | CG8336-PA | 1..383 | 1..383 | 2021 | 100 | Plus |
CG8336-PB | 383 | CG8336-PB | 1..383 | 1..383 | 2021 | 100 | Plus |
CG17266-PB | 183 | CG17266-PB | 14..183 | 12..183 | 398 | 48 | Plus |