Clone BO07422 Report

Search the DGRC for BO07422

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCtsB1-RA
Protein status:BO07422.pep: validated full length
Sequenced Size:1054

Clone Sequence Records

BO07422.3prime Sequence

942 bp (810 high quality bases) assembled on 2006-01-06

> BO07422.3prime
ATGGTCTAGAAAGCTTGCCAGCTTGGGCAGACCCGCCGAAATGGAGCTCT
CGATGCCGCAATGATCCTGGCCACGCAGGATGCGGAAGAAACCATGATCG
CCCCAATCGGTGTTCCACGAGTTACCAATTAGCCAGTACGGAATCTTCTC
CTCGCCCCAAACGCCCCAGCCCAAAATGCGAATGGCATGACCGCCCAGCT
CCTTGCCATGCTCGTGCTGATAGACACCGTCCTTGTACAGAATGAGATCC
TCATAAACGGTGAAGGCGCCCTCAACCGGTCCATTGGTCATGATCTCCTC
CTGAATTTCACGCACATTACGCCTCACCGAGTACGACTTGGAGCCGAAGT
GCTTGTCCTTGGCATAATCGACGGTGTAACCGCTCTGGCAGACGTGCGAA
CACTTGGGCGTTCTACCGCCATGGGCACATGGTGGTCGGGTTCCATTCAC
ATGGTGCTCACAGGGAGAAATCTCGTAAGGACGGCAGCCCTGATTAGATC
CGTAGGGTCCTCCGCTGACGATTCCCTTGCGCGTCCAGTAGCTCCAGGCG
GCGCCGGGGAAACCGCCATTGCAGCCAAATCCGCAGGTGTGGCAGCAGGA
GACGAGATCATCGGCCGAAAAGTGGAAATTCACCTTGCCGCCGGAATGGA
TGCACACGCGATCGGACATGGCTTCCACGGCACCAAAGGCCCAGCAGGAG
CCGCATGAACCCTGGTCGCGAATCTCGCCAATGGTTGGGCAGTTTGGCCA
TTGCTTGCGGGAATCGAACTCTTCGGGAAGTTCGTCAACGCTATTCACGT
ATAGATCGCCAAGAACTTCACGCTTGTCGGGCAGTGCGAACTTGTGCGCA
TCCGGATGGACGCCCATCAGGCGGCGAATATGTCCCTCCGTTACGGATGC
ATCGAAATTGCGACCCACCGTCCAGGTTTTGGCCTTACTGCG

BO07422.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10992-PA 1023 CG10992-RA 97..1020 942..19 4620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
CtsB1-RC 1594 CG10992-RC 338..1261 942..19 4620 100 Minus
CtsB1-RA 1425 CG10992-RA 338..1261 942..19 4620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13780180..13780653 19..492 2370 100 Plus
X 23542271 X 13781471..13781734 656..919 1320 100 Plus
X 23542271 X 13781158..13781326 489..657 845 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:45:22 has no hits.

BO07422.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:05 Download gff for BO07422.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10992-PA 97..1023 15..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:03 Download gff for BO07422.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10992-PA 97..1023 15..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:26 Download gff for BO07422.3prime
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 247..1178 11..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:23 Download gff for BO07422.3prime
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 338..1269 11..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:23 Download gff for BO07422.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13781159..13781326 490..657 100 <- Plus
X 13781473..13781733 658..918 100 <- Plus
X 13781810..13781833 919..942 100   Plus
X 13780172..13780650 11..489 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:26 Download gff for BO07422.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13675506..13675766 658..918 100 <- Plus
arm_X 13674205..13674683 11..489 99 <- Plus
arm_X 13675192..13675359 490..657 100 <- Plus
arm_X 13675843..13675866 919..942 100   Plus

BO07422.5prime Sequence

891 bp (751 high quality bases) assembled on 2006-01-06

> BO07422.5prime
GAAGTTATCAGTCGACATGAATCTATTGCTCCTGGTGGCCACCGCGGCCT
CCGTGGCGGCACTCACGTCCGGTGAGCCGTCACTGCTCTCGGATGAGTTC
ATCGAGGTGGTGCGCAGTAAGGCCAAAACCTGGACGGTGGGTCGCAATTT
CGATGCATCCGTAACGGAGGGACATATTCGCCGCCTGATGGGCGTCCATC
CGGATGCGCACAAGTTCGCACTGCCCGACAAGCGTGAAGTTCTTGGCGAT
CTATACGTGAATAGCGTTGACGAACTTCCCGAAGAGTTCGATTCCCGCAA
GCAATGGCCAAACTGCCCAACCATTGGCGAGATTCGCGACCAGGGTTCAT
GCGGCTCCTGCTGGGCCTTTGGTGCCGTGGAAGCCATGTCCGATCGCGTG
TGCATCCATTCCGGCGGCAAGGTGAATTTCCACTTTTCGGCCGATGATCT
CGTCTCCTGCTGCCACACCTGCGGATTTGGCTGCAATGGCGGTTTCCCCG
GCGCCGCCTGGAGCTACTGGACGCGCAAGGGAATCGTCAGCGGAGGACCC
TACGGATCTAATCAGGGCTGCCGTCCTTACGAGATTTCTCCCTGTGAGCA
CCATGTGAATGGAACCCGACCACCATGTGCCCATGGCGGTAGAACGCCCA
AGTGTTCGCACGTCTGCCAGAGCGGTTACACCGTCGATTATGCCAAGGAC
AAGCACTTCGGCTCCAAGTCGTACTCGGTGAGGCGTAATGTGCGTGAAAT
TCANGAGGAGATCATGACCAATGGACCGGTTGAGGGCGCCTTCACCGTTT
ATGAGGATCTCATTCTGTACAAGGACGGTGTCTATCAGCACGAGCATGGC
AAGGAGCTGGGCGGTCATGCCATTCGCATTTTGGGCTGGGG

BO07422.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10992-PA 1023 CG10992-RA 1..875 17..891 4356 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
CtsB1-RC 1594 CG10992-RC 242..1116 17..891 4364 99.9 Plus
CtsB1-RA 1425 CG10992-RA 242..1116 17..891 4364 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13780325..13780653 891..563 1634 99.7 Minus
X 23542271 X 13781471..13781734 399..136 1320 100 Minus
X 23542271 X 13781158..13781326 566..398 845 100 Minus
X 23542271 X 13781808..13781929 138..17 610 100 Minus
Blast to na_te.dros performed on 2015-02-12 14:08:22 has no hits.

BO07422.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:06 Download gff for BO07422.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10992-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:04 Download gff for BO07422.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10992-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:12 Download gff for BO07422.5prime
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 151..1025 17..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:29 Download gff for BO07422.5prime
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 242..1116 17..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:29 Download gff for BO07422.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13781473..13781733 137..397 100 <- Minus
X 13781810..13781929 17..136 100   Minus
X 13780325..13780650 566..891 99 <- Minus
X 13781159..13781326 398..565 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:12 Download gff for BO07422.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13674358..13674683 566..891 99 <- Minus
arm_X 13675192..13675359 398..565 100 <- Minus
arm_X 13675506..13675766 137..397 100 <- Minus
arm_X 13675843..13675962 17..136 100   Minus

BO07422.complete Sequence

1054 bp (1054 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630780

> BO07422.complete
GAAGTTATCAGTCGACATGAATCTATTGCTCCTGGTGGCCACCGCGGCCT
CCGTGGCGGCACTCACGTCCGGTGAGCCGTCACTGCTCTCGGATGAGTTC
ATCGAGGTGGTGCGCAGTAAGGCCAAAACCTGGACGGTGGGTCGCAATTT
CGATGCATCCGTAACGGAGGGACATATTCGCCGCCTGATGGGCGTCCATC
CGGATGCGCACAAGTTCGCACTGCCCGACAAGCGTGAAGTTCTTGGCGAT
CTATACGTGAATAGCGTTGACGAACTTCCCGAAGAGTTCGATTCCCGCAA
GCAATGGCCAAACTGCCCAACCATTGGCGAGATTCGCGACCAGGGTTCAT
GCGGCTCCTGCTGGGCCTTTGGTGCCGTGGAAGCCATGTCCGATCGCGTG
TGCATCCATTCCGGCGGCAAGGTGAATTTCCACTTTTCGGCCGATGATCT
CGTCTCCTGCTGCCACACCTGCGGATTTGGCTGCAATGGCGGTTTCCCCG
GCGCCGCCTGGAGCTACTGGACGCGCAAGGGAATCGTCAGCGGAGGACCC
TACGGATCTAATCAGGGCTGCCGTCCTTACGAGATTTCTCCCTGTGAGCA
CCATGTGAATGGAACCCGACCACCATGTGCCCATGGCGGTAGAACGCCCA
AGTGTTCGCACGTCTGCCAGAGCGGTTACACCGTCGATTATGCCAAGGAC
AAGCACTTCGGCTCCAAGTCGTACTCGGTGAGGCGTAATGTGCGTGAAAT
TCAGGAGGAGATCATGACCAATGGACCGGTTGAGGGCGCCTTCACCGTTT
ATGAGGATCTCATTCTGTACAAGGACGGTGTCTATCAGCACGAGCATGGC
AAGGAGCTGGGCGGTCATGCCATTCGCATTTTGGGCTGGGGCGTTTGGGG
CGAGGAGAAGATTCCGTACTGGCTAATTGGTAACTCGTGGAACACCGATT
GGGGCGATCATGGTTTCTTCCGCATCCTGCGTGGCCAGGATCATTGCGGC
ATCGAGAGCTCCATTTCGGCGGGTCTGCCCAAGCTGGCAAGCTTTCTAGA
CCAT

BO07422.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
CtsB1-RC 1023 CG10992-PC 1..1020 17..1036 5100 100 Plus
CtsB1-RA 1023 CG10992-PA 1..1020 17..1036 5100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
CtsB1-RC 1594 CG10992-RC 242..1261 17..1036 5100 100 Plus
CtsB1-RA 1425 CG10992-RA 242..1261 17..1036 5100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13780180..13780653 1036..563 2370 100 Minus
X 23542271 X 13781471..13781734 399..136 1320 100 Minus
X 23542271 X 13781158..13781326 566..398 845 100 Minus
X 23542271 X 13781808..13781929 138..17 610 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:08:08 has no hits.

BO07422.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:39 Download gff for BO07422.complete
Subject Subject Range Query Range Percent Splice Strand
CG10992-RA 1..1023 17..1040 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:41 Download gff for BO07422.complete
Subject Subject Range Query Range Percent Splice Strand
CG10992-RA 253..1280 17..1044 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:49 Download gff for BO07422.complete
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 151..1170 17..1038 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:39 Download gff for BO07422.complete
Subject Subject Range Query Range Percent Splice Strand
CG10992-RA 253..1280 17..1044 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:39 Download gff for BO07422.complete
Subject Subject Range Query Range Percent Splice Strand
CtsB1-RA 242..1261 17..1038 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:39 Download gff for BO07422.complete
Subject Subject Range Query Range Percent Splice Strand
X 13780178..13780650 566..1038 99 <- Minus
X 13781159..13781326 398..565 100 <- Minus
X 13781473..13781733 137..397 100 <- Minus
X 13781810..13781929 17..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:49 Download gff for BO07422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13674211..13674683 566..1038 99 <- Minus
arm_X 13675192..13675359 398..565 100 <- Minus
arm_X 13675506..13675766 137..397 100 <- Minus
arm_X 13675843..13675962 17..136 100   Minus

BO07422.pep Sequence

Translation from 16 to 1054

> BO07422.pep
MNLLLLVATAASVAALTSGEPSLLSDEFIEVVRSKAKTWTVGRNFDASVT
EGHIRRLMGVHPDAHKFALPDKREVLGDLYVNSVDELPEEFDSRKQWPNC
PTIGEIRDQGSCGSCWAFGAVEAMSDRVCIHSGGKVNFHFSADDLVSCCH
TCGFGCNGGFPGAAWSYWTRKGIVSGGPYGSNQGCRPYEISPCEHHVNGT
RPPCAHGGRTPKCSHVCQSGYTVDYAKDKHFGSKSYSVRRNVREIQEEIM
TNGPVEGAFTVYEDLILYKDGVYQHEHGKELGGHAIRILGWGVWGEEKIP
YWLIGNSWNTDWGDHGFFRILRGQDHCGIESSISAGLPKLASFLDH

BO07422.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
CtsB1-PC 340 CG10992-PC 1..340 1..340 1893 100 Plus
CtsB1-PA 340 CG10992-PA 1..340 1..340 1893 100 Plus
Swim-PA 431 CG3074-PA 182..425 82..343 370 34.9 Plus
Swim-PB 431 CG3074-PB 182..425 82..343 370 34.9 Plus
CG12163-PB 475 CG12163-PB 254..473 86..337 236 27.6 Plus