Clone Sequence Records
BO07422.3prime Sequence
942 bp (810 high quality bases) assembled on 2006-01-06
> BO07422.3prime
ATGGTCTAGAAAGCTTGCCAGCTTGGGCAGACCCGCCGAAATGGAGCTCT
CGATGCCGCAATGATCCTGGCCACGCAGGATGCGGAAGAAACCATGATCG
CCCCAATCGGTGTTCCACGAGTTACCAATTAGCCAGTACGGAATCTTCTC
CTCGCCCCAAACGCCCCAGCCCAAAATGCGAATGGCATGACCGCCCAGCT
CCTTGCCATGCTCGTGCTGATAGACACCGTCCTTGTACAGAATGAGATCC
TCATAAACGGTGAAGGCGCCCTCAACCGGTCCATTGGTCATGATCTCCTC
CTGAATTTCACGCACATTACGCCTCACCGAGTACGACTTGGAGCCGAAGT
GCTTGTCCTTGGCATAATCGACGGTGTAACCGCTCTGGCAGACGTGCGAA
CACTTGGGCGTTCTACCGCCATGGGCACATGGTGGTCGGGTTCCATTCAC
ATGGTGCTCACAGGGAGAAATCTCGTAAGGACGGCAGCCCTGATTAGATC
CGTAGGGTCCTCCGCTGACGATTCCCTTGCGCGTCCAGTAGCTCCAGGCG
GCGCCGGGGAAACCGCCATTGCAGCCAAATCCGCAGGTGTGGCAGCAGGA
GACGAGATCATCGGCCGAAAAGTGGAAATTCACCTTGCCGCCGGAATGGA
TGCACACGCGATCGGACATGGCTTCCACGGCACCAAAGGCCCAGCAGGAG
CCGCATGAACCCTGGTCGCGAATCTCGCCAATGGTTGGGCAGTTTGGCCA
TTGCTTGCGGGAATCGAACTCTTCGGGAAGTTCGTCAACGCTATTCACGT
ATAGATCGCCAAGAACTTCACGCTTGTCGGGCAGTGCGAACTTGTGCGCA
TCCGGATGGACGCCCATCAGGCGGCGAATATGTCCCTCCGTTACGGATGC
ATCGAAATTGCGACCCACCGTCCAGGTTTTGGCCTTACTGCG
BO07422.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10992-PA | 1023 | CG10992-RA | 97..1020 | 942..19 | 4620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtsB1-RC | 1594 | CG10992-RC | 338..1261 | 942..19 | 4620 | 100 | Minus |
CtsB1-RA | 1425 | CG10992-RA | 338..1261 | 942..19 | 4620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13780180..13780653 | 19..492 | 2370 | 100 | Plus |
X | 23542271 | X | 13781471..13781734 | 656..919 | 1320 | 100 | Plus |
X | 23542271 | X | 13781158..13781326 | 489..657 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:45:22 has no hits.
BO07422.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:05 Download gff for
BO07422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10992-PA | 97..1023 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:03 Download gff for
BO07422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10992-PA | 97..1023 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:26 Download gff for
BO07422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtsB1-RA | 247..1178 | 11..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:23 Download gff for
BO07422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtsB1-RA | 338..1269 | 11..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:23 Download gff for
BO07422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13781159..13781326 | 490..657 | 100 | <- | Plus |
X | 13781473..13781733 | 658..918 | 100 | <- | Plus |
X | 13781810..13781833 | 919..942 | 100 | | Plus |
X | 13780172..13780650 | 11..489 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:26 Download gff for
BO07422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13675506..13675766 | 658..918 | 100 | <- | Plus |
arm_X | 13674205..13674683 | 11..489 | 99 | <- | Plus |
arm_X | 13675192..13675359 | 490..657 | 100 | <- | Plus |
arm_X | 13675843..13675866 | 919..942 | 100 | | Plus |
BO07422.5prime Sequence
891 bp (751 high quality bases) assembled on 2006-01-06
> BO07422.5prime
GAAGTTATCAGTCGACATGAATCTATTGCTCCTGGTGGCCACCGCGGCCT
CCGTGGCGGCACTCACGTCCGGTGAGCCGTCACTGCTCTCGGATGAGTTC
ATCGAGGTGGTGCGCAGTAAGGCCAAAACCTGGACGGTGGGTCGCAATTT
CGATGCATCCGTAACGGAGGGACATATTCGCCGCCTGATGGGCGTCCATC
CGGATGCGCACAAGTTCGCACTGCCCGACAAGCGTGAAGTTCTTGGCGAT
CTATACGTGAATAGCGTTGACGAACTTCCCGAAGAGTTCGATTCCCGCAA
GCAATGGCCAAACTGCCCAACCATTGGCGAGATTCGCGACCAGGGTTCAT
GCGGCTCCTGCTGGGCCTTTGGTGCCGTGGAAGCCATGTCCGATCGCGTG
TGCATCCATTCCGGCGGCAAGGTGAATTTCCACTTTTCGGCCGATGATCT
CGTCTCCTGCTGCCACACCTGCGGATTTGGCTGCAATGGCGGTTTCCCCG
GCGCCGCCTGGAGCTACTGGACGCGCAAGGGAATCGTCAGCGGAGGACCC
TACGGATCTAATCAGGGCTGCCGTCCTTACGAGATTTCTCCCTGTGAGCA
CCATGTGAATGGAACCCGACCACCATGTGCCCATGGCGGTAGAACGCCCA
AGTGTTCGCACGTCTGCCAGAGCGGTTACACCGTCGATTATGCCAAGGAC
AAGCACTTCGGCTCCAAGTCGTACTCGGTGAGGCGTAATGTGCGTGAAAT
TCANGAGGAGATCATGACCAATGGACCGGTTGAGGGCGCCTTCACCGTTT
ATGAGGATCTCATTCTGTACAAGGACGGTGTCTATCAGCACGAGCATGGC
AAGGAGCTGGGCGGTCATGCCATTCGCATTTTGGGCTGGGG
BO07422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10992-PA | 1023 | CG10992-RA | 1..875 | 17..891 | 4356 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtsB1-RC | 1594 | CG10992-RC | 242..1116 | 17..891 | 4364 | 99.9 | Plus |
CtsB1-RA | 1425 | CG10992-RA | 242..1116 | 17..891 | 4364 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13780325..13780653 | 891..563 | 1634 | 99.7 | Minus |
X | 23542271 | X | 13781471..13781734 | 399..136 | 1320 | 100 | Minus |
X | 23542271 | X | 13781158..13781326 | 566..398 | 845 | 100 | Minus |
X | 23542271 | X | 13781808..13781929 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 14:08:22 has no hits.
BO07422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:06 Download gff for
BO07422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10992-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:04 Download gff for
BO07422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10992-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:12 Download gff for
BO07422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtsB1-RA | 151..1025 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:29 Download gff for
BO07422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtsB1-RA | 242..1116 | 17..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:29 Download gff for
BO07422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13781473..13781733 | 137..397 | 100 | <- | Minus |
X | 13781810..13781929 | 17..136 | 100 | | Minus |
X | 13780325..13780650 | 566..891 | 99 | <- | Minus |
X | 13781159..13781326 | 398..565 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:12 Download gff for
BO07422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13674358..13674683 | 566..891 | 99 | <- | Minus |
arm_X | 13675192..13675359 | 398..565 | 100 | <- | Minus |
arm_X | 13675506..13675766 | 137..397 | 100 | <- | Minus |
arm_X | 13675843..13675962 | 17..136 | 100 | | Minus |
BO07422.complete Sequence
1054 bp (1054 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630780
> BO07422.complete
GAAGTTATCAGTCGACATGAATCTATTGCTCCTGGTGGCCACCGCGGCCT
CCGTGGCGGCACTCACGTCCGGTGAGCCGTCACTGCTCTCGGATGAGTTC
ATCGAGGTGGTGCGCAGTAAGGCCAAAACCTGGACGGTGGGTCGCAATTT
CGATGCATCCGTAACGGAGGGACATATTCGCCGCCTGATGGGCGTCCATC
CGGATGCGCACAAGTTCGCACTGCCCGACAAGCGTGAAGTTCTTGGCGAT
CTATACGTGAATAGCGTTGACGAACTTCCCGAAGAGTTCGATTCCCGCAA
GCAATGGCCAAACTGCCCAACCATTGGCGAGATTCGCGACCAGGGTTCAT
GCGGCTCCTGCTGGGCCTTTGGTGCCGTGGAAGCCATGTCCGATCGCGTG
TGCATCCATTCCGGCGGCAAGGTGAATTTCCACTTTTCGGCCGATGATCT
CGTCTCCTGCTGCCACACCTGCGGATTTGGCTGCAATGGCGGTTTCCCCG
GCGCCGCCTGGAGCTACTGGACGCGCAAGGGAATCGTCAGCGGAGGACCC
TACGGATCTAATCAGGGCTGCCGTCCTTACGAGATTTCTCCCTGTGAGCA
CCATGTGAATGGAACCCGACCACCATGTGCCCATGGCGGTAGAACGCCCA
AGTGTTCGCACGTCTGCCAGAGCGGTTACACCGTCGATTATGCCAAGGAC
AAGCACTTCGGCTCCAAGTCGTACTCGGTGAGGCGTAATGTGCGTGAAAT
TCAGGAGGAGATCATGACCAATGGACCGGTTGAGGGCGCCTTCACCGTTT
ATGAGGATCTCATTCTGTACAAGGACGGTGTCTATCAGCACGAGCATGGC
AAGGAGCTGGGCGGTCATGCCATTCGCATTTTGGGCTGGGGCGTTTGGGG
CGAGGAGAAGATTCCGTACTGGCTAATTGGTAACTCGTGGAACACCGATT
GGGGCGATCATGGTTTCTTCCGCATCCTGCGTGGCCAGGATCATTGCGGC
ATCGAGAGCTCCATTTCGGCGGGTCTGCCCAAGCTGGCAAGCTTTCTAGA
CCAT
BO07422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtsB1-RC | 1023 | CG10992-PC | 1..1020 | 17..1036 | 5100 | 100 | Plus |
CtsB1-RA | 1023 | CG10992-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtsB1-RC | 1594 | CG10992-RC | 242..1261 | 17..1036 | 5100 | 100 | Plus |
CtsB1-RA | 1425 | CG10992-RA | 242..1261 | 17..1036 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13780180..13780653 | 1036..563 | 2370 | 100 | Minus |
X | 23542271 | X | 13781471..13781734 | 399..136 | 1320 | 100 | Minus |
X | 23542271 | X | 13781158..13781326 | 566..398 | 845 | 100 | Minus |
X | 23542271 | X | 13781808..13781929 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:08:08 has no hits.
BO07422.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:39 Download gff for
BO07422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10992-RA | 1..1023 | 17..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:41 Download gff for
BO07422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10992-RA | 253..1280 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:49 Download gff for
BO07422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtsB1-RA | 151..1170 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:39 Download gff for
BO07422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10992-RA | 253..1280 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:39 Download gff for
BO07422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtsB1-RA | 242..1261 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:39 Download gff for
BO07422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13780178..13780650 | 566..1038 | 99 | <- | Minus |
X | 13781159..13781326 | 398..565 | 100 | <- | Minus |
X | 13781473..13781733 | 137..397 | 100 | <- | Minus |
X | 13781810..13781929 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:49 Download gff for
BO07422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13674211..13674683 | 566..1038 | 99 | <- | Minus |
arm_X | 13675192..13675359 | 398..565 | 100 | <- | Minus |
arm_X | 13675506..13675766 | 137..397 | 100 | <- | Minus |
arm_X | 13675843..13675962 | 17..136 | 100 | | Minus |
BO07422.pep Sequence
Translation from 16 to 1054
> BO07422.pep
MNLLLLVATAASVAALTSGEPSLLSDEFIEVVRSKAKTWTVGRNFDASVT
EGHIRRLMGVHPDAHKFALPDKREVLGDLYVNSVDELPEEFDSRKQWPNC
PTIGEIRDQGSCGSCWAFGAVEAMSDRVCIHSGGKVNFHFSADDLVSCCH
TCGFGCNGGFPGAAWSYWTRKGIVSGGPYGSNQGCRPYEISPCEHHVNGT
RPPCAHGGRTPKCSHVCQSGYTVDYAKDKHFGSKSYSVRRNVREIQEEIM
TNGPVEGAFTVYEDLILYKDGVYQHEHGKELGGHAIRILGWGVWGEEKIP
YWLIGNSWNTDWGDHGFFRILRGQDHCGIESSISAGLPKLASFLDH
BO07422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtsB1-PC | 340 | CG10992-PC | 1..340 | 1..340 | 1893 | 100 | Plus |
CtsB1-PA | 340 | CG10992-PA | 1..340 | 1..340 | 1893 | 100 | Plus |
Swim-PA | 431 | CG3074-PA | 182..425 | 82..343 | 370 | 34.9 | Plus |
Swim-PB | 431 | CG3074-PB | 182..425 | 82..343 | 370 | 34.9 | Plus |
CG12163-PB | 475 | CG12163-PB | 254..473 | 86..337 | 236 | 27.6 | Plus |