Clone Sequence Records
BO07423.3prime Sequence
854 bp (845 high quality bases) assembled on 2006-01-06
> BO07423.3prime
ATGGTCTAGAAAGCTTGCCGAACGCTTGCTGCGCGCCTGCGCCTGCAGCA
GATCCACCGACGGCACGACAAACACAAACGACAGGCAACCGAATCGCAGC
AGGCTGCCGTGAGCCAGCACCGCCGATCCCTCCCAGGCGCCATCCACCAT
GGGCACTGGTCCGGCGTTCATGCAGCGGCAGGCGGGCTTAACAATGGGCG
CCAATCGTTCTTTGTCGATTTTCTTCGTCTCGAACTGGCGATTAATGTTC
CGACGCTTGTCCAGCATCTCATCGACGCGCTTCTTCAGCTCCGCATCGTC
AGGTCGCATCGGCTTGCCGGCGTGCGTTGTCATCCTTTCGGTCACGTCGC
AGGCATACAGCTGTCCATTCACCTCGGTGCCAAACTCTGAGTAATTGATC
AGCTCGTACGACTTGGAGAATTCGTCGTAGAAGATGATGGCGTGCTGCGG
TGAAATGCGACAACAGTAACCAATGGCCGACAGGTCCACGGTCTCCGTTT
GCGCCAGCGTCGTCGATGGCGAATAGTGTCCACCGTAGCCAATGTACAGC
GTGCGGTAGCGCATGAAAATCGAATGGTCCAGCCCCAGCGAACTGAACCA
GCGGCTATCCTCGAGCATGTCGCCCAGTGGCGTTATCACCGCACGCGCCT
GCACTTTGCACTGCAGCAGCTTGAGCTCCAGGCGCGATGCCAGCTCGTAT
GCCTTCTCCGTGTCGCTACGGGCACGCGGCGCATAGCTTTCGGCAGCGGC
ATCTGCTGCTGCAATGGCCGCCGCTGTGGCCAGTGCCGGATGCAGGGCCG
TTGCGGGATCTTCGTCGGCGGCATTGCCATTCTTTTGCGCCAGAATTGAG
GACG
BO07423.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-PA | 2637 | CG3815-RA | 1799..2634 | 854..19 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-RA | 3232 | CG3815-RA | 1916..2751 | 854..19 | 4180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:33:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6297583..6298231 | 854..206 | 3245 | 100 | Minus |
| X | 23542271 | X | 6298302..6298489 | 206..19 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:33:27 has no hits.
BO07423.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:07 Download gff for
BO07423.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-PA | 1799..2637 | 18..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:06 Download gff for
BO07423.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-PA | 1799..2637 | 18..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:06:27 Download gff for
BO07423.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 1916..2751 | 19..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:06 Download gff for
BO07423.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 1916..2751 | 19..854 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:06 Download gff for
BO07423.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6297583..6298231 | 206..854 | 100 | -> | Minus |
| X | 6298303..6298489 | 19..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:06:27 Download gff for
BO07423.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6191616..6192264 | 206..854 | 100 | -> | Minus |
| arm_X | 6192336..6192522 | 19..205 | 100 | | Minus |
BO07423.5prime Sequence
906 bp (760 high quality bases) assembled on 2006-01-06
> BO07423.5prime
GAAGTTATCAGTCGACATGTCAAAATTGGACCAGGACCCGAACGCCTCAC
TGAGCATCATGGAGCAAATCAAGCAGCTCATCCGCCCGCCGCCCAACGAG
GACGAGAAGATGATGCAGCGGTCCACCAACACGAAGCATCCGTACTACAG
GCGCCCGGGCAGGGGCCACAACCACGACTATTGTGACGCCTGCGAGGAGG
GCGGCAATCTGCTGTGCTGCGATCGATGCCCCTCCAGCTTCCACCTGCAA
TGCCATGATCCACCGTTGAGCGAGGAGGACATACCCAGTGGCCAGTGGCT
GTGCCACAGCTGTCGCATGAGCAAGCTCTCCCAGCCGCCGGCCTCCTCAT
CCAAGGCCAGTTCCGTGGAGCGTGTGCCTTCGGCGGGCAGTGGCTCACGG
GCGAATACTCCATCGTCTGGCGATCTGGAGTCCATACCGCTGAAGATCCG
CAACCTGCGCAAACGCAGCAACAGCGAACGCAATAGCACCGAGAAGCTGC
TGGCCAAAATGCCGATGTCCATACAGCGCGCCCTCGATCCGAACAAGAAG
CCAACGCCGCTGGACGATGTCATCAGGGCGGCCACCATGATGAATCCGCA
GCAATTCTCGCTGCCGCCGGAGCTCGAGCTGCACACCCAGTTCCCGGGCA
ATGGCAAGGTGCAACCCGTACAGCAGACGCATCCGCCGAGCGGAAATGGC
GGTAATCGCAGATGCGCCGGCAATCAGCGACGCAACTCCAAGCCGTTTGA
GCTGGATGCCCAGGGACTGGTGCCGCTGCCCGCCAAAACCTGTTTCTACT
GCACGCGCTCCTGCAAACGGGCGCCGCTCATCTCCTGCGACTACTGTCCG
CTCTACTTTCACCAGGATTGCCTGGATCCGCAACTGACGGGACTGCCAGC
TGGATT
BO07423.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-PA | 2637 | CG3815-RA | 1..890 | 17..906 | 4400 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-RA | 3232 | CG3815-RA | 118..1007 | 17..906 | 4420 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6295964..6296614 | 256..906 | 3225 | 99.7 | Plus |
| X | 23542271 | X | 6295708..6295900 | 63..255 | 965 | 100 | Plus |
| X | 23542271 | X | 6295506..6295553 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:23:00 has no hits.
BO07423.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:08 Download gff for
BO07423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:08 Download gff for
BO07423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:31 Download gff for
BO07423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 118..1007 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:48:39 Download gff for
BO07423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 118..1007 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:48:39 Download gff for
BO07423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6295710..6295900 | 65..255 | 100 | -> | Plus |
| X | 6295506..6295553 | 17..64 | 100 | -> | Plus |
| X | 6295964..6296614 | 256..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:31 Download gff for
BO07423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6189539..6189586 | 17..64 | 100 | -> | Plus |
| arm_X | 6189743..6189933 | 65..255 | 100 | -> | Plus |
| arm_X | 6189997..6190647 | 256..906 | 99 | | Plus |
BO07423.complete Sequence
2668 bp (2668 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630781
> BO07423.complete
GAAGTTATCAGTCGACATGTCAAAATTGGACCAGGACCCGAACGCCTCAC
TGAGCATCATGGAGCAAATCAAGCAGCTCATCCGCCCGCCGCCCAACGAG
GACGAGAAGATGATGCAGCGGTCCACCAACACGAAGCATCCGTACTACAG
GCGCCCGGGCAGGGGCCACAACCACGACTATTGTGACGCCTGCGAGGAGG
GCGGCAATCTGCTGTGCTGCGATCGATGCCCCTCCAGCTTCCACCTGCAA
TGCCATGATCCACCGTTGAGCGAGGAGGACATACCCAGTGGCCAGTGGCT
GTGCCACAGCTGTCGCATGAGCAAGCTCTCCCAGCCGCCGGCCTCCTCAT
CCAAGGCCAGTTCCGTGGAGCGTGTGCCTTCGGCGGGCAGTGGCTCACGG
GCGAATACTCCATCGTCTGGCGATCTGGAGTCCATACCGCTGAAGATCCG
CAACCTGCGCAAACGCAGCAACAGCGAACGCAATAGCACCGAGAAGCTGC
TGGCCAAAATGCCGATGTCCATACAGCGCGCCCTCGATCCGAACAAGAAG
CCAACGCCGCTGGACGATGTCATCAGGGCGGCCACCATGATGAATCCGCA
GCAATTCTCGCTGCCGCCGGAGCTCGAGCTGCACACCCAGTTCCCGGGCA
ATGGCAAGGTGCAACCCGTACAGCAGACGCATCCGCCGAGCGGAAATGGC
GGTAATCGCAGATGCGCCGGCAATCAGCGACGCAACTCCAAGCCGTTTGA
GCTGGATGCCCAGGGACTGGTGCCGCTGCCCGCCAAAACCTGTTTCTACT
GCACGCGCTCCTGCAAACGGGCGCCGCTCATCTCCTGCGACTACTGTCCG
CTCTACTTTCACCAGGATTGCCTGGATCCGCCACTGACGGCACTGCCAGC
TGGATTGTGGATGTGCCCCAATCATGCCGAGAATTTTATCGATGCCAATA
TGACCAATAGCATTTCGGCCACGGAGCGGGTGCGTCTCTGGAATCGCTTC
CACCAGCCACTTGACCATGAAAATGTCAAGCTTGAGTTCTTCCGGCGTGT
CAACACGCGCAATCCGCCCTTTCGCACCAAGAGAAATCTGCGTGCTCGCG
CCCACATCGAGGTGCCAGCCATTGTGCGCTACCACTACGATCATCCGCCG
CCGCTGTTGCCCTCCATGCGCCAAACGTTGCGCTACGATCGGGTAAAGCG
GCGCAATAACCTGCCCACCGAAGTCGAGGAGATATCCCGTGAGTCGGTCA
CCGAATCGCTGCTCAAGGATCTGGAGGCCTTGCGCACGGCTCACGCCAAA
TTCCGTGAGATTCAGAGGGAATTCGGAACCTTGGAGACGGCCATAGATGG
CGATAGCGACAGCGATCCCAGTCCTGAAGAGAAAAGGACCGAGACGAACA
CTCCCGCCGATAAAGTGAATGGCGAAGTGGATACGGAGAATCCCAATACA
GAATCGAATGCGCAGGCCAGCGAACAGCCGTCGGTTGTCAAGGTGGAGTC
CAAGACCAGCCTAGAGGTGGAGGCTAGCTTCGAGGAGGACGAGGAGGACA
GCAAGAAATCAACGGGTATTATCGATGCAGACCTCTTACACCTGGACGTC
GATATAATCAAGAAGCTGGCGCACCAGCGTCTGCAGCAGCTGGTCGAAGA
GCATCCGGAGATTGTGACACAGTACAAGAATCGCACGGCCGCTCGTCGCC
TGCGTCAACTGGCGTCAGTCGATGGCACACATGTGGCTGGCGAAACTGCT
GCCCTGCAAGGCCAACTGGCGCCGGAGGATATGAACCGTTTCTCGCTGCT
CTTCACCAGCGAAACGTCCTCAATTCTGGCGCAAAAGAATGGCAATGCCG
CCGACGAAGATCCCGCAACGGCCCTGCATCCGGCACTGGCCACAGCGGCG
GCCATTGCAGCAGCAGATGCCGCTGCCGAAAGCTATGCGCCGCGTGCCCG
TAGCGACACGGAGAAGGCATACGAGCTGGCATCGCGCCTGGAGCTCAAGC
TGCTGCAGTGCAAAGTGCAGGCGCGTGCGGTGATAACGCCACTGGGCGAC
ATGCTCGAGGATAGCCGCTGGTTCAGTTCGCTGGGGCTGGACCATTCGAT
TTTCATGCGCTACCGCACGCTGTACATTGGCTACGGTGGACACTATTCGC
CATCGACGACGCTGGCGCAAACGGAGACCGTGGACCTGTCGGCCATTGGT
TACTGTTGTCGCATTTCACCGCAGCACGCCATCATCTTCTACGACGAATT
CTCCAAGTCGTACGAGCTGATCAATTACTCAGAGTTTGGCACCGAGGTGA
ATGGACAGCTGTATGCCTGCGACGTGACCGAAAGGATGACAACGCACGCC
GGCAAGCCGATGCGACCTGACGATGCGGAGCTGAAGAAGCGCGTCGATGA
GATGCTGGACAAGCGTCGGAACATTAATCGCCAGTTCGAGACGAAGAAAA
TCGACAAAGAACGATTGGCGCCCATTGTTAAGCCCGCCTGCCGCTGCATG
AACGCCGGACCAGTGCCCATGGTGGATGGCGCCTGGGAGGGATCGGCGGT
GCTGGCTCACGGCAGCCTGCTGCGATTCGGTTGCCTGTCGTTTGTGTTTG
TCGTGCCGTCGGTGGATCTGCTGCAGGCGCAGGCGCGCAGCAAGCGTTCG
GCAAGCTTTCTAGACCAT
BO07423.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-RA | 2637 | CG3815-PA | 1..2634 | 17..2650 | 13170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-RA | 3232 | CG3815-RA | 118..2751 | 17..2650 | 13170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6296709..6298231 | 941..2463 | 7615 | 100 | Plus |
| X | 23542271 | X | 6295964..6296649 | 256..941 | 3430 | 100 | Plus |
| X | 23542271 | X | 6295708..6295900 | 63..255 | 965 | 100 | Plus |
| X | 23542271 | X | 6298302..6298489 | 2463..2650 | 940 | 100 | Plus |
| X | 23542271 | X | 6295506..6295553 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:38:41 has no hits.
BO07423.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:10 Download gff for
BO07423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 1..2637 | 17..2651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:11 Download gff for
BO07423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 116..2749 | 17..2650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:50 Download gff for
BO07423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 118..2751 | 17..2652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:10 Download gff for
BO07423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 116..2749 | 17..2650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:28 Download gff for
BO07423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3815-RA | 118..2751 | 17..2652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:28 Download gff for
BO07423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6295710..6295900 | 65..255 | 100 | -> | Plus |
| X | 6295506..6295553 | 17..64 | 100 | -> | Plus |
| X | 6295964..6296648 | 256..940 | 100 | -> | Plus |
| X | 6296709..6298231 | 941..2463 | 100 | -> | Plus |
| X | 6298303..6298489 | 2464..2652 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:50 Download gff for
BO07423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6189539..6189586 | 17..64 | 100 | -> | Plus |
| arm_X | 6189743..6189933 | 65..255 | 100 | -> | Plus |
| arm_X | 6189997..6190681 | 256..940 | 100 | -> | Plus |
| arm_X | 6190742..6192264 | 941..2463 | 100 | -> | Plus |
| arm_X | 6192336..6192522 | 2464..2652 | 98 | | Plus |
BO07423.pep Sequence
Translation from 16 to 2668
> BO07423.pep
MSKLDQDPNASLSIMEQIKQLIRPPPNEDEKMMQRSTNTKHPYYRRPGRG
HNHDYCDACEEGGNLLCCDRCPSSFHLQCHDPPLSEEDIPSGQWLCHSCR
MSKLSQPPASSSKASSVERVPSAGSGSRANTPSSGDLESIPLKIRNLRKR
SNSERNSTEKLLAKMPMSIQRALDPNKKPTPLDDVIRAATMMNPQQFSLP
PELELHTQFPGNGKVQPVQQTHPPSGNGGNRRCAGNQRRNSKPFELDAQG
LVPLPAKTCFYCTRSCKRAPLISCDYCPLYFHQDCLDPPLTALPAGLWMC
PNHAENFIDANMTNSISATERVRLWNRFHQPLDHENVKLEFFRRVNTRNP
PFRTKRNLRARAHIEVPAIVRYHYDHPPPLLPSMRQTLRYDRVKRRNNLP
TEVEEISRESVTESLLKDLEALRTAHAKFREIQREFGTLETAIDGDSDSD
PSPEEKRTETNTPADKVNGEVDTENPNTESNAQASEQPSVVKVESKTSLE
VEASFEEDEEDSKKSTGIIDADLLHLDVDIIKKLAHQRLQQLVEEHPEIV
TQYKNRTAARRLRQLASVDGTHVAGETAALQGQLAPEDMNRFSLLFTSET
SSILAQKNGNAADEDPATALHPALATAAAIAAADAAAESYAPRARSDTEK
AYELASRLELKLLQCKVQARAVITPLGDMLEDSRWFSSLGLDHSIFMRYR
TLYIGYGGHYSPSTTLAQTETVDLSAIGYCCRISPQHAIIFYDEFSKSYE
LINYSEFGTEVNGQLYACDVTERMTTHAGKPMRPDDAELKKRVDEMLDKR
RNINRQFETKKIDKERLAPIVKPACRCMNAGPVPMVDGAWEGSAVLAHGS
LLRFGCLSFVFVVPSVDLLQAQARSKRSASFLDH
BO07423.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3815-PA | 878 | CG3815-PA | 1..878 | 1..878 | 4615 | 100 | Plus |
| Chd3-PA | 892 | CG9594-PA | 14..79 | 26..99 | 165 | 40.5 | Plus |
