Clone Sequence Records
BO07424.3prime Sequence
918 bp (766 high quality bases) assembled on 2006-01-06
> BO07424.3prime
ATGGTCTAGAAAGCTTGCGTTAGCAAATGCCGCCAGTCCGGTGATGGCTC
GGCCCAGGATCAACGCGTGTATATCGTGCGTGCCCTCATAGGTGTTAACT
GACTCCAGGTTGATTACATGGCGGATCACATGATATTCGTCGCTGATTCC
GTTTGCACCCAGCATGTCCCTCATTTGGCGCGCTATATCAAGCGATTTGC
CAGTATTGTTTCGCTTTAGAAGGGAAATCATGTCGGGCGTGTGCAGCTTC
TGATCCTTGAGGCGACCCACATGCAGGCAAGCCTGCAGACCCAACGCAAT
CTCTGTGATGGCATCGGCCAGCTTCTTTTGGATCAACTGATTTGCAGCCA
AAGGACGACCGAATTGTTTGCGATCCAGTGTATACTGGCGAGCAATCTCC
ACGCAGGTTTCAGCTGCTCCCAGGGCTCCCCACGCGATTCCATAGCGAGC
GTTGTTCAGACAGCTGAAGGGTCCACTAAAGCCGGCCACATTGGGTAGCA
ACTGCTCCTCTGGCACACGGACCTCGTCCATCAGGATCATACCCGTGGGC
GAAGCACGCAGAGAGAACTTGCCCTCGATCTTTGGCGTCTCCAAACCCTT
GCCGGATATCTTGCGATCCACCAGGAAGCCGCGTACCTTGCCATCCTCGC
ATTTTGCCCATACGACTATGACGTCTGCGATGGGCGCACTAGTAATCCAC
GTCTTAGATCCGTTCAGGATGTATGTCTTGCTTTTGCTATCGTACTTGGC
ACGGGTCTCCATGCCAGCGGGGTCACTACCGTGGTTGGGTTCAGTTAGGC
CAAAGGCACCAATCAGCTTGCCCTCCGCCATGCTGGGGCAATAGCGTTGC
TTCTGCTCCTCGGATCCAAAGTCGTAGATGGCGCCCATGGCCAGCGAGCT
CTGGACACTGACAGCAGA
BO07424.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9547-PA | 1260 | CG9547-RA | 358..1257 | 918..19 | 4450 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9547-RA | 1441 | CG9547-RA | 452..1351 | 918..19 | 4470 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:56:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6493064..6493855 | 19..810 | 3960 | 100 | Plus |
| 2L | 23513712 | 2L | 6493970..6494081 | 807..918 | 530 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 21:56:09 has no hits.
BO07424.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:09 Download gff for
BO07424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-PA | 359..1260 | 15..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:09 Download gff for
BO07424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-PA | 359..1260 | 15..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:24 Download gff for
BO07424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-RA | 453..1354 | 15..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:46:08 Download gff for
BO07424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-RA | 453..1354 | 15..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:46:08 Download gff for
BO07424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6493973..6494080 | 810..917 | 98 | | Plus |
| 2L | 6493061..6493854 | 15..809 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:24 Download gff for
BO07424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6493061..6493854 | 15..809 | 99 | <- | Plus |
| arm_2L | 6493973..6494080 | 810..917 | 98 | | Plus |
BO07424.5prime Sequence
858 bp (779 high quality bases) assembled on 2006-01-06
> BO07424.5prime
GAAGTTATCAGTCGACATGATTGCGCAAAGTGTAATCAGCAAACTGCGAC
CGTGTGCCCGCCGCTTGGCCAGCACGAGCTCCAAAGCCGCAGCTCCCAAA
TTCAACTGGCAGGATCCGCTGAATTTGGAGAGCCAATTGACCGAGGAAGA
GGTGGCCATTCGGGATGCGTTCCGTGGATACTGTCAGGCCGAGCTGCAGC
CGCGCGTCAAGATGGCCAATCGCCTGGAGACGTTCGACAAGAAAATTATG
GAGGAGATCGGCAGTCTGGGTGTCCTCGGCTGCACCATTAAGGGATACGG
CTGCGCCGGAGTCTCTAGCGTTGCCTACGGCTTGCTCACCCGCGAGGTGG
AGCGCGTGGACTCCGCTTATCGGTCTGCTGTCAGTGTCCAGAGCTCGCTG
GCCATGGGCGCCATCTACGACTTTGGATCCGAGGAGCAGAAGCAACGCTA
TTTGCCCAGCATGGCGGAGGGCAAGCTGATTGGTGCCTTTGGCCTAACTG
AACCCAACCACGGTAGTGACCCCGCTGGCATGGAGACCCGTGCCAAGTAC
GATAGCAAAAGCAAGACATACATCCTGAACGGATCTAAGACGTGGATTAC
TAGTGCGCCCATCGCAGACGTCATAGTCGTATGGGCAAAATGCGAGGATG
GCAAGGTACGCGGCTTCCTGGTGGATCGCAAGATATCCGGCAAGGGTTTG
GAGACGCCAAAGATCGAGGGCAAGTTCTCTCTGCGTGCTTCGCCCACGGG
TATGATCCTGATGGACGAGGTCCGTGTGCCAGAGGAGCAGTTGCTACCCA
ATGTGGCCGGCTTTAGTGGACCCTTCAGCTGTCTGAACAACGCTCGCTAT
GGAATCGC
BO07424.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9547-PA | 1260 | CG9547-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9547-RA | 1441 | CG9547-RA | 95..936 | 17..858 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6493970..6494438 | 485..17 | 2345 | 100 | Minus |
| 2L | 23513712 | 2L | 6493479..6493855 | 858..482 | 1885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:34:00 has no hits.
BO07424.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:10 Download gff for
BO07424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:10 Download gff for
BO07424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:06:30 Download gff for
BO07424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-RA | 95..936 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:18 Download gff for
BO07424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-RA | 95..936 | 17..858 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:18 Download gff for
BO07424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6493479..6493854 | 483..858 | 100 | <- | Minus |
| 2L | 6493973..6494436 | 19..482 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:06:30 Download gff for
BO07424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6493479..6493854 | 483..858 | 100 | <- | Minus |
| arm_2L | 6493973..6494436 | 19..482 | 100 | <- | Minus |
BO07424.complete Sequence
1291 bp (1291 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630782
> BO07424.complete
GAAGTTATCAGTCGACATGATTGCGCAAAGTGTAATCAGCAAACTGCGAC
CGTGTGCCCGCCGCTTGGCCAGCACGAGCTCCAAAGCCGCAGCTCCCAAA
TTCAACTGGCAGGATCCGCTGAATTTGGAGAGCCAATTGACCGAGGAAGA
GGTGGCCATTCGGGATGCGTTCCGTGGATACTGTCAGGCCGAGCTGCAGC
CGCGCGTCAAGATGGCCAATCGCCTGGAGACGTTCGACAAGAAAATTATG
GAGGAGATCGGCAGTCTGGGTGTCCTCGGCTGCACCATTAAGGGATACGG
CTGCGCCGGAGTCTCTAGCGTTGCCTACGGCTTGCTCACCCGCGAGGTGG
AGCGCGTGGACTCCGCTTATCGGTCTGCTGTCAGTGTCCAGAGCTCGCTG
GCCATGGGCGCCATCTACGACTTTGGATCCGAGGAGCAGAAGCAACGCTA
TTTGCCCAGCATGGCGGAGGGCAAGCTGATTGGTGCCTTTGGCCTAACTG
AACCCAACCACGGTAGTGACCCCGCTGGCATGGAGACCCGTGCCAAGTAC
GATAGCAAAAGCAAGACATACATCCTGAACGGATCTAAGACGTGGATTAC
TAGTGCGCCCATCGCAGACGTCATAGTCGTATGGGCAAAATGCGAGGATG
GCAAGGTACGCGGCTTCCTGGTGGATCGCAAGATATCCGGCAAGGGTTTG
GAGACGCCAAAGATCGAGGGCAAGTTCTCTCTGCGTGCTTCGCCCACGGG
TATGATCCTGATGGACGAGGTCCGTGTGCCAGAGGAGCAGTTGCTACCCA
ATGTGGCCGGCTTTAGTGGACCCTTCAGCTGTCTGAACAACGCTCGCTAT
GGAATCGCGTGGGGAGCCCTGGGAGCAGCTGAAACCTGCGTGGAGATTGC
TCGCCAGTATACACTGGATCGCAAACAATTCGGTCGTCCTTTGGCTGCAA
ATCAGTTGATCCAAAAGAAGCTGGCCGATGCCATCACAGAGATTGCGTTG
GGTCTGCAGGCTTGCCTGCATGTGGGTCGCCTCAAGGATCAGAAGCTGCA
CACGCCCGACATGATTTCCCTTCTAAAGCGAAACAATACTGGCAAATCGC
TTGATATAGCGCGCCAAATGAGGGACATGCTGGGTGCAAACGGAATCAGC
GACGAATATCATGTGATCCGCCATGTAATCAACCTGGAGTCAGTTAACAC
CTATGAGGGCACGCACGATATACACGCGTTGATCCTGGGCCGAGCCATCA
CCGGACTGGCGGCATTTGCTAACGCAAGCTTTCTAGACCAT
BO07424.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9547-RA | 1260 | CG9547-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9547-RA | 1441 | CG9547-RA | 95..1351 | 17..1273 | 6285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6493064..6493855 | 1273..482 | 3960 | 100 | Minus |
| 2L | 23513712 | 2L | 6493970..6494438 | 485..17 | 2345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:41:12 has no hits.
BO07424.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:40 Download gff for
BO07424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-RA | 1..1260 | 17..1277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:43 Download gff for
BO07424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-RA | 90..1349 | 17..1277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:40 Download gff for
BO07424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-RA | 95..1351 | 17..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:40 Download gff for
BO07424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-RA | 90..1349 | 17..1277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:38 Download gff for
BO07424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-RA | 95..1351 | 17..1275 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:38 Download gff for
BO07424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6493062..6493854 | 483..1275 | 99 | <- | Minus |
| 2L | 6493973..6494438 | 17..482 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:40 Download gff for
BO07424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6493062..6493854 | 483..1275 | 99 | <- | Minus |
| arm_2L | 6493973..6494438 | 17..482 | 100 | | Minus |
BO07424.pep Sequence
Translation from 16 to 1291
> BO07424.pep
MIAQSVISKLRPCARRLASTSSKAAAPKFNWQDPLNLESQLTEEEVAIRD
AFRGYCQAELQPRVKMANRLETFDKKIMEEIGSLGVLGCTIKGYGCAGVS
SVAYGLLTREVERVDSAYRSAVSVQSSLAMGAIYDFGSEEQKQRYLPSMA
EGKLIGAFGLTEPNHGSDPAGMETRAKYDSKSKTYILNGSKTWITSAPIA
DVIVVWAKCEDGKVRGFLVDRKISGKGLETPKIEGKFSLRASPTGMILMD
EVRVPEEQLLPNVAGFSGPFSCLNNARYGIAWGALGAAETCVEIARQYTL
DRKQFGRPLAANQLIQKKLADAITEIALGLQACLHVGRLKDQKLHTPDMI
SLLKRNNTGKSLDIARQMRDMLGANGISDEYHVIRHVINLESVNTYEGTH
DIHALILGRAITGLAAFANASFLDH
BO07424.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9547-PA | 419 | CG9547-PA | 1..419 | 1..419 | 2141 | 100 | Plus |
| CG4860-PA | 415 | CG4860-PA | 37..408 | 41..411 | 419 | 29.7 | Plus |
| CG3902-PA | 414 | CG3902-PA | 37..408 | 41..411 | 410 | 29.5 | Plus |
| Arc42-PA | 405 | CG4703-PA | 25..399 | 39..411 | 404 | 29 | Plus |
| CG12262-PA | 419 | CG12262-PA | 10..409 | 12..409 | 377 | 29.5 | Plus |
