Clone Sequence Records
BO07427.3prime Sequence
848 bp (838 high quality bases) assembled on 2006-01-06
> BO07427.3prime
ATGGTCTAGAAAGCTTGCTCTGGGCTCGCCGGGCAAGGAAATTGGCGGAA
AATCGGGATCGAAATCGGGTGGACAGGCCGCCACGTAGGCCTCTACCGCA
GCCTTTTTGGCCTCCTCCGTATACGCTCCATCGCCGGTGGCCATGAAAGC
CGCCAATGCGGCCTTTTCCGGATCCGTGACAGCCTGCAGGAGCTGCGCTT
GATTCTCACTCTCGTCCTCGCTCTCCCCTGCACTGCTGATTGTATCCAGC
CGTCCCATCTCGCTTCCCATCTTGCATTTGGCCGAGGACTTTCCCCTCTG
CTGATCCTTGTCCTCCGTGTCCTGTGCCTCAGGTCCTTCAAGCTCCTCGG
TGAGATCGATGTAGCGTTGCAGGCGCTTTGGCAACCTCAACGTGTCGATG
CCGCTTGGCAGTTGATTGTGCATCCGCATGACGTCGCGGATACAGCAGCG
GCATAAATGACGTAGACTGGGCACTCCGTAGACCTGCTCTTTGCCGATAA
TCTTGTCCATTAAAAGGCGGCCATAGCGATCGAAGAACATTTCCCTTCGG
GCAGCGTATAAAAGGGGCTTGAAGGGCATCTCAATCATGACCACATTGCG
CAGCAGAATCTTGAGGCACATGACCAGTTCGAAGCTGTAATTGCGGCCAT
CCTCGATGAGTTTGTCGAGCAGCGCTATAATTACGGAGGCGCCTCCGTCT
GGCGGCTGCGGTGCGGCGCCGTATCTCAGCAGTATGAGCAGCAGTTCGGG
AGCGTTCGCCTGTAGGGCAATGCGAAGGGGCGAGGACTTGCCGCATGACT
CAATGGGGACATCAATGAATCTGAGCTGTCGCTCCTGCTCGAAGCGCG
BO07427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31006-PB | 1338 | CG31006-RB | 506..1335 | 848..19 | 4150 | 100 | Minus |
| CG31006-PA | 1566 | CG31006-RA | 734..1563 | 848..19 | 4150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:56:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stops-RC | 2154 | CG31006-RC | 1049..1878 | 848..19 | 4150 | 100 | Minus |
| stops-RA | 1970 | CG31006-RA | 865..1694 | 848..19 | 4150 | 100 | Minus |
| stops-RB | 2109 | CG31006-RB | 1004..1833 | 848..19 | 4150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31158432..31158862 | 19..449 | 2155 | 100 | Plus |
| 3R | 32079331 | 3R | 31161173..31161331 | 568..726 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 31160958..31161078 | 449..569 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 31163540..31163638 | 725..823 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 21:56:13 has no hits.
BO07427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:13 Download gff for
BO07427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31006-PA | 734..1566 | 18..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:15 Download gff for
BO07427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31006-PA | 734..1566 | 18..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:26 Download gff for
BO07427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RB | 1001..1836 | 15..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:46:24 Download gff for
BO07427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RB | 1004..1839 | 15..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:46:24 Download gff for
BO07427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31163540..31163635 | 725..820 | 100 | <- | Plus |
| 3R | 31166176..31166203 | 821..848 | 100 | | Plus |
| 3R | 31158426..31158861 | 15..448 | 99 | <- | Plus |
| 3R | 31160958..31161076 | 449..567 | 100 | <- | Plus |
| 3R | 31161173..31161329 | 568..724 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:26 Download gff for
BO07427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26984148..26984583 | 15..448 | 99 | <- | Plus |
| arm_3R | 26986680..26986798 | 449..567 | 100 | <- | Plus |
| arm_3R | 26986895..26987051 | 568..724 | 100 | <- | Plus |
| arm_3R | 26989262..26989357 | 725..820 | 100 | <- | Plus |
| arm_3R | 26991898..26991925 | 821..848 | 100 | | Plus |
BO07427.5prime Sequence
874 bp (768 high quality bases) assembled on 2006-01-06
> BO07427.5prime
GAAGTTATCAGTCGACATGGACTACATCTTCGAGTGCTTCTTCGACGACA
CCTTCGAGCAGATCTCCCGCAACGGACTGCAGGACCGCCAGTCGCGGCGA
GATGTCCTCGACCACCTGAGCTCCATCATCAAGGGCTGCAGCGGCGGCCA
GAACTCGCAGACGGATGAGGTGGCCGCCATCGCGGTGACGGCGGCCATGA
GGTACCACCGAATGGCCAAGGAGCAGAACGGCCAGGTCTGCCTCATGGGC
AAGTATCACAACATCCTGTACATCGGACTGCGCACCTGCTGGGATTGGGG
AGTCCGGGACTCGGAGGTGGTCGTCAAGCTGCTGGTGGCCATTTACGAGT
GCGAGAAGACATATGAGCGCATTTTCCTGGGCGCCCTGTTTGGACCACAT
GCTCCGCACTTCATCGCCGGCTGGCGCAGTGACTTTCAGGATCAGCACGA
GAATGTCCGGGCTATGGTTTACTTTCTGAAGCACGCCACACGCGAACAGC
TCACATTGCCCGTCTGGATTCCGCGCTTCGAGCAGGAGCGACAGCTCAGA
TTCATTGATGTCCCCATTGAGTCATGCGGCAAGTCCTCGCCCCTTCGCAT
TGCCCTACAGGCGAACGCTCCCGAACTGCTGCTCATACTGCTGAGATACG
GCGCCGCACCGCAGCCGCCAGACGGAGGCGCCTCCGTAATTATAGCGCTG
CTCGACAAACTCATCGAGGATGGCCGCAATTACAGCTTCGAACTGGTCAT
GTGCCTCAAGATTCTGCTGCGNCATGTGGTCATGATTGAGATGCCCTTNC
AGCCCCTTTTATACGCTGCCCGAAGGGAAATGTTTCTCGATCGCTATGGC
CGCCTTTTTATGGACNAGATTATC
BO07427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31006-PA | 1566 | CG31006-RA | 228..1086 | 16..874 | 4113 | 99 | Plus |
| CG31006-PB | 1338 | CG31006-RB | 1..858 | 17..874 | 4108 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stops-RC | 2154 | CG31006-RC | 543..1401 | 16..874 | 4187 | 99.1 | Plus |
| stops-RA | 1970 | CG31006-RA | 359..1217 | 16..874 | 4187 | 99.1 | Plus |
| stops-RB | 2109 | CG31006-RB | 498..1356 | 16..874 | 4187 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31168025..31168246 | 237..16 | 1110 | 100 | Minus |
| 3R | 32079331 | 3R | 31161177..31161331 | 798..644 | 749 | 98.7 | Minus |
| 3R | 32079331 | 3R | 31166350..31166460 | 445..335 | 555 | 100 | Minus |
| 3R | 32079331 | 3R | 31166176..31166282 | 549..443 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 31167326..31167429 | 335..232 | 520 | 100 | Minus |
| 3R | 32079331 | 3R | 31163540..31163638 | 645..547 | 495 | 100 | Minus |
| 3R | 32079331 | 3R | 31161005..31161079 | 874..800 | 319 | 94.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:45:41 has no hits.
BO07427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:14 Download gff for
BO07427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31006-PA | 221..1086 | 7..874 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:16 Download gff for
BO07427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31006-PA | 221..1086 | 7..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:28 Download gff for
BO07427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RB | 488..1353 | 7..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:12:15 Download gff for
BO07427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RB | 491..1356 | 7..874 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:12:15 Download gff for
BO07427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31166350..31166459 | 336..445 | 100 | <- | Minus |
| 3R | 31167326..31167425 | 236..335 | 100 | <- | Minus |
| 3R | 31168027..31168253 | 7..235 | 98 | | Minus |
| 3R | 31161005..31161076 | 803..874 | 94 | <- | Minus |
| 3R | 31161173..31161329 | 646..802 | 97 | <- | Minus |
| 3R | 31163540..31163635 | 550..645 | 100 | <- | Minus |
| 3R | 31166176..31166279 | 446..549 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:28 Download gff for
BO07427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26986727..26986798 | 803..874 | 94 | <- | Minus |
| arm_3R | 26986895..26987051 | 646..802 | 97 | <- | Minus |
| arm_3R | 26989262..26989357 | 550..645 | 100 | <- | Minus |
| arm_3R | 26991898..26992001 | 446..549 | 100 | <- | Minus |
| arm_3R | 26992072..26992181 | 336..445 | 100 | <- | Minus |
| arm_3R | 26993048..26993147 | 236..335 | 100 | <- | Minus |
| arm_3R | 26993749..26993975 | 7..235 | 98 | | Minus |
BO07427.complete Sequence
1369 bp (1369 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630783
> BO07427.complete
GAAGTTATCAGTCGACATGGACTACATCTTCGAGTGCTTCTTCGACGACA
CCTTCGAGCAGATCTCCCGCAACGGACTGCAGGACCGCCAGTCGCGGCGA
GATGTCCTCGACCACCTGAGCTCCATCATCAAGGGCTGCAGCGGCGGCCA
GAACTCGCAGACGGATGAGGTGGCCGCCATCGCGGTGACGGCGGCCATGA
GGTACCACCGAATGGCCAAGGAGCAGAACGGCCAGGTCTGCCTCATGGGC
AAGTATCACAACATCCTGTACATCGGACTGCGCACCTGCTGGGATTGGGG
AGTCCGGGACTCGGAGGTGGTCGTCAAGCTGCTGGTGGCCATTTACGAGT
GCGAGAAGACATATGAGCGCATTTTCCTGGGCGCCCTGTTTGGACCACAT
GCTCCGCACTTCATCGCCGGCTGGCGCAGTGACTTTCAGGATCAGCACGA
GAATGTCCGGGCTATGGTTTACTTTCTGAAGCACGCCACACGCGAACAGC
TCACATTGCCCGTCTGGATTCCGCGCTTCGAGCAGGAGCGACAGCTCAGA
TTCATTGATGTCCCCATTGAGTCATGCGGCAAGTCCTCGCCCCTTCGCAT
TGCCCTACAGGCGAACGCTCCCGAACTGCTGCTCATACTGCTGAGATACG
GCGCCGCACCGCAGCCGCCAGACGGAGGCGCCTCCGTAATTATAGCGCTG
CTCGACAAACTCATCGAGGATGGCCGCAATTACAGCTTCGAACTGGTCAT
GTGCCTCAAGATTCTGCTGCGCAATGTGGTCATGATTGAGATGCCCTTCA
AGCCCCTTTTATACGCTGCCCGAAGGGAAATGTTCTTCGATCGCTATGGC
CGCCTTTTAATGGACAAGATTATCGGCAAAGAGCAGGTCTACGGAGTGCC
CAGTCTACGTCATTTATGCCGCTGCTGTATCCGCGACGTCATGCGGATGC
ACAATCAACTGCCAAGCGGCATCGACACGTTGAGGTTGCCAAAGCGCCTG
CAACGCTACATCGATCTCACCGAGGAGCTTGAAGGACCTGAGGCACAGGA
CACGGAGGACAAGGATCAGCAGAGGGGAAAGTCCTCGGCCAAATGCAAGA
TGGGAAGCGAGATGGGACGGCTGGATACAATCAGCAGTGCAGGGGAGAGC
GAGGACGAGAGTGAGAATCAAGCGCAGCTCCTGCAGGCTGTCACGGATCC
GGAAAAGGCCGCATTGGCGGCTTTCATGGCCACCGGCGATGGAGCGTATA
CGGAGGAGGCCAAAAAGGCTGCGGTAGAGGCCTACGTGGCGGCCTGTCCA
CCCGATTTCGATCCCGATTTTCCGCCAATTTCCTTGCCCGGCGAGCCCAG
AGCAAGCTTTCTAGACCAT
BO07427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stops-RA | 1566 | CG31006-PA | 228..1563 | 16..1351 | 6680 | 100 | Plus |
| stops-RC | 1338 | CG31006-PC | 1..1335 | 17..1351 | 6675 | 100 | Plus |
| stops-RB | 1338 | CG31006-PB | 1..1335 | 17..1351 | 6675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stops-RC | 2154 | CG31006-RC | 543..1878 | 16..1351 | 6680 | 100 | Plus |
| stops-RA | 1970 | CG31006-RA | 359..1694 | 16..1351 | 6680 | 100 | Plus |
| stops-RB | 2109 | CG31006-RB | 498..1833 | 16..1351 | 6680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31158432..31158862 | 1351..921 | 2155 | 100 | Minus |
| 3R | 32079331 | 3R | 31168025..31168246 | 237..16 | 1110 | 100 | Minus |
| 3R | 32079331 | 3R | 31161173..31161331 | 802..644 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 31160958..31161078 | 921..801 | 605 | 100 | Minus |
| 3R | 32079331 | 3R | 31166350..31166460 | 445..335 | 555 | 100 | Minus |
| 3R | 32079331 | 3R | 31166176..31166282 | 549..443 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 31167326..31167429 | 335..232 | 520 | 100 | Minus |
| 3R | 32079331 | 3R | 31163540..31163638 | 645..547 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:18:50 has no hits.
BO07427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:42 Download gff for
BO07427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RA | 221..1566 | 7..1352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:44 Download gff for
BO07427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RA | 352..1700 | 7..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:24 Download gff for
BO07427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RB | 496..1830 | 17..1353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:42 Download gff for
BO07427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RA | 352..1700 | 7..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:34 Download gff for
BO07427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RB | 499..1833 | 17..1353 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:34 Download gff for
BO07427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31158428..31158861 | 922..1353 | 99 | <- | Minus |
| 3R | 31160958..31161076 | 803..921 | 100 | <- | Minus |
| 3R | 31161173..31161329 | 646..802 | 100 | <- | Minus |
| 3R | 31163540..31163635 | 550..645 | 100 | <- | Minus |
| 3R | 31166176..31166279 | 446..549 | 100 | <- | Minus |
| 3R | 31166350..31166459 | 336..445 | 100 | <- | Minus |
| 3R | 31167326..31167425 | 236..335 | 100 | <- | Minus |
| 3R | 31168027..31168245 | 17..235 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:24 Download gff for
BO07427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26993048..26993147 | 236..335 | 100 | <- | Minus |
| arm_3R | 26984150..26984583 | 922..1353 | 99 | <- | Minus |
| arm_3R | 26986680..26986798 | 803..921 | 100 | <- | Minus |
| arm_3R | 26986895..26987051 | 646..802 | 100 | <- | Minus |
| arm_3R | 26989262..26989357 | 550..645 | 100 | <- | Minus |
| arm_3R | 26991898..26992001 | 446..549 | 100 | <- | Minus |
| arm_3R | 26992072..26992181 | 336..445 | 100 | <- | Minus |
| arm_3R | 26993749..26993967 | 17..235 | 100 | | Minus |
BO07427.pep Sequence
Translation from 16 to 1369
> BO07427.pep
MDYIFECFFDDTFEQISRNGLQDRQSRRDVLDHLSSIIKGCSGGQNSQTD
EVAAIAVTAAMRYHRMAKEQNGQVCLMGKYHNILYIGLRTCWDWGVRDSE
VVVKLLVAIYECEKTYERIFLGALFGPHAPHFIAGWRSDFQDQHENVRAM
VYFLKHATREQLTLPVWIPRFEQERQLRFIDVPIESCGKSSPLRIALQAN
APELLLILLRYGAAPQPPDGGASVIIALLDKLIEDGRNYSFELVMCLKIL
LRNVVMIEMPFKPLLYAARREMFFDRYGRLLMDKIIGKEQVYGVPSLRHL
CRCCIRDVMRMHNQLPSGIDTLRLPKRLQRYIDLTEELEGPEAQDTEDKD
QQRGKSSAKCKMGSEMGRLDTISSAGESEDESENQAQLLQAVTDPEKAAL
AAFMATGDGAYTEEAKKAAVEAYVAACPPDFDPDFPPISLPGEPRASFLD
H
BO07427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stops-PC | 445 | CG31006-PC | 1..445 | 1..445 | 2332 | 100 | Plus |
| stops-PA | 521 | CG31006-PA | 77..521 | 1..445 | 2332 | 100 | Plus |
| stops-PB | 445 | CG31006-PB | 1..445 | 1..445 | 2332 | 100 | Plus |
