Clone Sequence Records
BO07435.3prime Sequence
909 bp (861 high quality bases) assembled on 2006-01-06
> BO07435.3prime
ATGGTCTAGAAAGCTTGCGTTGGCCGCCTTCTTCGACTTCTTCATTCGCT
CGCCCTCATTCTCGTTCTCATCTAATTTGGCGCTCTCCGTGCTGCTGGAC
TCGGCATCGTACTCGAGCTCGGGATCTGGAACCTCGGCGTAGTGCACGTG
ACCCACCATGGTGGCTCCGGCCAACACTCCGTCCTTGAACTCCTCGGGAC
CGCCCAGCTGGGAGGCGTGGGTGCCATCGCCGTACTTCTCGAGGGTGCGA
CGCACCAGCTCCTTGGATGGCTGCTTCATGTTCCAGGCCCACCCCAACTT
GTGGAACGCATCCAGCACCATGGTGGTGAAGTTCACGGTGTAGTTGCCCA
GCTCAGCTGCTTTGTAGTCCCAGGGGAATACGTGGTGGTAGTTGTGCCAT
CCCTCGCCCATGGCCAGCAGGGACACATAGATGTTCTCGCTGGGCATGAT
CCGCTTATCGTATGGACGGGATCCCCACAGATGGGCGGCACTGTTCACAG
ACCAAGTGAAGTTCAAGCTGCTCACGTAGCGGAAGAGGCACTGCTGGATA
AAGGCCAGGGTCCAGGTCTCGCCCCAGCAGTAGACTGGGATCACGGTGGG
CAAGATGAAGCAGAAGAAGGTCTTCAGGGGGATGAAGTACTTCTGGTGGA
AGCGGACCACGGGATCAGCCAGAATGTCGCTCATGTCGATCTGGCGACCA
CGACGAAGTACCTCCGGATGCTTCAGCATCATTAGCCAGCCCACGTGGGA
GAAGAAGAATCCCCTGTTAGCATTGTGGGGATCCGCATCCGTCTCCGAGT
ATTTGTGATGAACTCGATGGTCGCGAACCCAGTCGTACAGGGTGTTCTGT
CCAGCCACGCAGTAGCAGACCATCAGGATGGATCGCAGCACGGTGTTGGG
CTTGTAGCT
BO07435.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9747-PA | 1386 | CG9747-RA | 493..1383 | 909..19 | 4430 | 99.8 | Minus |
| CG9743-PA | 1263 | CG9743-RA | 955..1016 | 423..362 | 235 | 95.1 | Minus |
| CG8630-PA | 1227 | CG8630-RA | 856..925 | 408..339 | 225 | 92.8 | Minus |
| CG5887-PA | 1152 | desat1-RA | 883..926 | 405..362 | 145 | 93.1 | Minus |
| CG5887-PC | 1152 | desat1-RC | 883..926 | 405..362 | 145 | 93.1 | Minus |
| CG5887-PE | 1152 | desat1-RE | 883..926 | 405..362 | 145 | 93.1 | Minus |
| CG5887-PB | 1152 | desat1-RB | 883..926 | 405..362 | 145 | 93.1 | Minus |
| CG5887-PD | 1152 | desat1-RD | 883..926 | 405..362 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9747-RB | 2318 | CG9747-RB | 1004..1894 | 909..19 | 4440 | 99.9 | Minus |
| CG9747-RA | 2138 | CG9747-RA | 824..1714 | 909..19 | 4440 | 99.9 | Minus |
| CG9743-RA | 1733 | CG9743-RA | 1144..1249 | 427..322 | 305 | 85.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30185847..30186282 | 19..454 | 2180 | 100 | Plus |
| 3R | 32079331 | 3R | 30186429..30186824 | 454..849 | 1980 | 100 | Plus |
| 3R | 32079331 | 3R | 30196909..30197014 | 322..427 | 305 | 85.8 | Plus |
| 3R | 32079331 | 3R | 30187389..30187451 | 847..909 | 300 | 98.4 | Plus |
| 3R | 32079331 | 3R | 13283516..13283594 | 417..339 | 290 | 91.1 | Minus |
| 3R | 32079331 | 3R | 12436889..12436977 | 822..734 | 250 | 85.4 | Minus |
| 3R | 32079331 | 3R | 12446124..12446221 | 831..734 | 250 | 83.7 | Minus |
| 3R | 32079331 | 3R | 12446639..12446755 | 438..322 | 210 | 78.6 | Minus |
| 3R | 32079331 | 3R | 30197376..30197452 | 734..810 | 205 | 84.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:41:36 has no hits.
BO07435.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:30 Download gff for
BO07435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-PA | 493..1386 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:37 Download gff for
BO07435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-PA | 493..1386 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:55:52 Download gff for
BO07435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-RA | 831..1721 | 19..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:40 Download gff for
BO07435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-RA | 824..1714 | 19..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:40 Download gff for
BO07435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30185847..30186282 | 19..454 | 100 | <- | Plus |
| 3R | 30186430..30186821 | 455..846 | 100 | <- | Plus |
| 3R | 30187389..30187451 | 847..909 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:55:52 Download gff for
BO07435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26011569..26012004 | 19..454 | 100 | <- | Plus |
| arm_3R | 26012152..26012543 | 455..846 | 100 | <- | Plus |
| arm_3R | 26013111..26013173 | 847..909 | 98 | | Plus |
BO07435.5prime Sequence
919 bp (782 high quality bases) assembled on 2006-01-06
> BO07435.5prime
GAAGTTATCAGTCGACATGGGTCACCTGTCCACCTCGGAGCGAGTGTGCA
GCAAGACGCCAGCCATCGCGACGGACTCCAGTCCTCCGCTTGTGGCCAGG
AGGTCGAAGTTCCCCAATGGAGACGCCCAGCAGCAGGTGCGCAGGGGAGA
GGACTCCTCGCCCGAGCTGCCGCCCCGTGGCAAGCTCCAACTGCCCCCGA
AGCGGGAGGAGCTGCCCAGGTCGGTGGTGCCCAAGGAGATCGCCAATCAT
GTGCCCAAGGATGCAATTGATCTCGAGGAGTACACCCGCACCTTCGTCGG
AGATCGAGTGTTGGGTTGGCAGTTTCAGGCTCCGCTCAAGTGGGACAAAG
TCATCCAGATCTCGCTCCTGCACATCGTGGCCGGAATCTGCCTGCTGACG
TATCCGCTGCGGGAGCTCAATCCATACACCACCATCTGGTCCTTCTTCGT
TGGCGGCGTGGCCGGATTCGGAGTTACGGCCGGAGCCCATAGGTTCTGGA
CCCACAAGAGCTACAAGGCCAACACCGTGCTGCGATCCATCCTGATGGTC
TGCTACTGCGTGGCTGGACAGAACACCCTGTACGACTGGGTTCGCGACCA
TCGAGTTCATCACAAATACTCGGAGACGGATGCGGATCCCCACAATGCTA
ACAGGGGATTCTTCTTCTCCCACGTGGGCTGGCTAATGATGCTGAAGCAT
CCGGAGGTACTTCGTCGTGGTCGCCAGATCGACATGAGCGACATTCTGGC
TGATCCCGTGGTCCGCTTCCACCAGAAGTACTTCATCCCCCTGAAGACCT
TCTTCTGCTTCATCTTGCCCACCGTGATCCCAGTCTACTGCTGGGGCGAG
ACCTGGACCCTGGCCTTTATCCAGCAGTGCCTCTTCCGCTACGTGAGCAG
CTTGAACTTCACTTGGTCT
BO07435.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9747-PA | 1386 | CG9747-RA | 1..903 | 17..919 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9747-RB | 2318 | CG9747-RB | 512..1414 | 17..919 | 4515 | 100 | Plus |
| CG9747-RA | 2138 | CG9747-RA | 332..1234 | 17..919 | 4515 | 100 | Plus |
| Desat1-RD | 1934 | CG5887-RD | 564..685 | 587..708 | 265 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30190318..30190741 | 440..17 | 2120 | 100 | Minus |
| 3R | 32079331 | 3R | 30186474..30186824 | 919..569 | 1755 | 100 | Minus |
| 3R | 32079331 | 3R | 30187389..30187519 | 571..441 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 12436889..12436977 | 596..684 | 250 | 85.4 | Plus |
| 3R | 32079331 | 3R | 12446124..12446221 | 587..684 | 250 | 83.7 | Plus |
| 3R | 32079331 | 3R | 30197376..30197452 | 684..608 | 205 | 84.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:19:33 has no hits.
BO07435.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:31 Download gff for
BO07435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-PA | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:39 Download gff for
BO07435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-PA | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:13 Download gff for
BO07435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-RA | 339..1241 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:49 Download gff for
BO07435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-RA | 332..1234 | 17..919 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:49 Download gff for
BO07435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30187389..30187519 | 441..571 | 100 | <- | Minus |
| 3R | 30186474..30186821 | 572..919 | 100 | <- | Minus |
| 3R | 30190318..30190741 | 17..440 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:13 Download gff for
BO07435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26012196..26012543 | 572..919 | 100 | <- | Minus |
| arm_3R | 26013111..26013241 | 441..571 | 100 | <- | Minus |
| arm_3R | 26016040..26016463 | 17..440 | 100 | | Minus |
BO07435.complete Sequence
1417 bp (1417 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630785
> BO07435.complete
GAAGTTATCAGTCGACATGGGTCACCTGTCCACCTCGGAGCGAGTGTGCA
GCAAGACGCCAGCCATCGCGACGGACTCCAGTCCTCCGCTTGTGGCCAGG
AGGTCGAAGTTCCCCAATGGAGACGCCCAGCAGCAGGTGCGCAGGGGAGA
GGACTCCTCGCCCGAGCTGCCGCCCCGTGGCAAGCTCCAACTGCCCCCGA
AGCGGGAGGAGCTGCCCAGGTCGGTGGTGCCCAAGGAGATCGCCAATCAT
GTGCCCAAGGATGCAATTGATCTCGAGGAGTACACCCGCACCTTCGTCGG
AGATCGAGTGTTGGGTTGGCAGTTTCAGGCTCCGCTCAAGTGGGACAAAG
TCATCCAGATCTCGCTCCTGCACATCGTGGCCGGAATCTGCCTGCTGACG
TATCCGCTGCGGGAGCTCAATCCATACACCACCATCTGGTCCTTCTTCGT
TGGCGGCGTGGCCGGATTCGGAGTTACGGCCGGAGCCCATAGGTTCTGGA
CCCACAAGAGCTACAAGGCCAACACCGTGCTGCGATCCATCCTGATGGTC
TGCTACTGCGTGGCTGGACAGAACACCCTGTACGACTGGGTTCGCGACCA
TCGAGTTCATCACAAATACTCGGAGACGGATGCGGATCCCCACAATGCTA
ACAGGGGATTCTTCTTCTCCCACGTGGGCTGGCTAATGATGCTGAAGCAT
CCGGAGGTACTTCGTCGTGGTCGCCAGATCGACATGAGCGACATTCTGGC
TGATCCCGTGGTCCGCTTCCACCAGAAGTACTTCATCCCCCTGAAGACCT
TCTTCTGCTTCATCTTGCCCACCGTGATCCCAGTCTACTGCTGGGGCGAG
ACCTGGACCCTGGCCTTTATCCAGCAGTGCCTCTTCCGCTACGTGAGCAG
CTTGAACTTCACTTGGTCTGTGAACAGTGCCGCCCATCTGTGGGGATCCC
GTCCATACGATAAGCGGATCATGCCCAGCGAGAACATCTATGTGTCCCTG
CTGGCCATGGGCGAGGGATGGCACAACTACCACCACGTATTCCCCTGGGA
CTACAAAGCAGCTGAGCTGGGCAACTACACCGTGAACTTCACCACCATGG
TGCTGGATGCGTTCCACAAGTTGGGGTGGGCCTGGAACATGAAGCAGCCA
TCCAAGGAGCTGGTGCGTCGCACCCTCGAGAAGTACGGCGATGGCACCCA
CGCCTCCCAGCTGGGCGGTCCCGAGGAGTTCAAGGACGGAGTGTTGGCCG
GAGCCACCATGGTGGGTCACGTGCACTACGCCGAGGTTCCAGATCCCGAG
CTCGAGTACGATGCCGAGTCCAGCAGCACGGAGAGCGCCAAATTAGATGA
GAACGAGAATGAGGGCGAGCGAATGAAGAAGTCGAAGAAGGCGGCCAACG
CAAGCTTTCTAGACCAT
BO07435.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9747-RB | 1386 | CG9747-PB | 1..1383 | 17..1399 | 6915 | 100 | Plus |
| CG9747-RA | 1386 | CG9747-PA | 1..1383 | 17..1399 | 6915 | 100 | Plus |
| CG9743-RA | 1263 | CG9743-PA | 951..1056 | 991..1096 | 305 | 85.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9747-RB | 2318 | CG9747-RB | 512..1894 | 17..1399 | 6915 | 100 | Plus |
| CG9747-RA | 2138 | CG9747-RA | 332..1714 | 17..1399 | 6915 | 100 | Plus |
| CG9743-RA | 1733 | CG9743-RA | 1144..1249 | 991..1096 | 305 | 85.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30185847..30186282 | 1399..964 | 2180 | 100 | Minus |
| 3R | 32079331 | 3R | 30190318..30190741 | 440..17 | 2120 | 100 | Minus |
| 3R | 32079331 | 3R | 30186429..30186824 | 964..569 | 1980 | 100 | Minus |
| 3R | 32079331 | 3R | 30187389..30187519 | 571..441 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 30196909..30197014 | 1096..991 | 305 | 85.8 | Minus |
| 3R | 32079331 | 3R | 13283516..13283594 | 1001..1079 | 290 | 91.1 | Plus |
| 3R | 32079331 | 3R | 12436889..12436977 | 596..684 | 250 | 85.4 | Plus |
| 3R | 32079331 | 3R | 12446124..12446221 | 587..684 | 250 | 83.7 | Plus |
| 3R | 32079331 | 3R | 12446639..12446755 | 980..1096 | 210 | 78.6 | Plus |
| 3R | 32079331 | 3R | 30197376..30197452 | 684..608 | 205 | 84.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:05:31 has no hits.
BO07435.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:27 Download gff for
BO07435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-RA | 1..1386 | 17..1400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:21 Download gff for
BO07435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-RA | 337..1719 | 17..1399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:01 Download gff for
BO07435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-RA | 339..1721 | 17..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:27 Download gff for
BO07435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-RA | 337..1719 | 17..1399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:27 Download gff for
BO07435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9747-RA | 332..1714 | 17..1401 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:27 Download gff for
BO07435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30187389..30187519 | 441..571 | 100 | <- | Minus |
| 3R | 30185845..30186282 | 964..1401 | 99 | <- | Minus |
| 3R | 30186430..30186821 | 572..963 | 100 | <- | Minus |
| 3R | 30190318..30190741 | 17..440 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:01 Download gff for
BO07435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26011567..26012004 | 964..1401 | 99 | <- | Minus |
| arm_3R | 26012152..26012543 | 572..963 | 100 | <- | Minus |
| arm_3R | 26013111..26013241 | 441..571 | 100 | <- | Minus |
| arm_3R | 26016040..26016463 | 17..440 | 100 | | Minus |
BO07435.pep Sequence
Translation from 16 to 1417
> BO07435.pep
MGHLSTSERVCSKTPAIATDSSPPLVARRSKFPNGDAQQQVRRGEDSSPE
LPPRGKLQLPPKREELPRSVVPKEIANHVPKDAIDLEEYTRTFVGDRVLG
WQFQAPLKWDKVIQISLLHIVAGICLLTYPLRELNPYTTIWSFFVGGVAG
FGVTAGAHRFWTHKSYKANTVLRSILMVCYCVAGQNTLYDWVRDHRVHHK
YSETDADPHNANRGFFFSHVGWLMMLKHPEVLRRGRQIDMSDILADPVVR
FHQKYFIPLKTFFCFILPTVIPVYCWGETWTLAFIQQCLFRYVSSLNFTW
SVNSAAHLWGSRPYDKRIMPSENIYVSLLAMGEGWHNYHHVFPWDYKAAE
LGNYTVNFTTMVLDAFHKLGWAWNMKQPSKELVRRTLEKYGDGTHASQLG
GPEEFKDGVLAGATMVGHVHYAEVPDPELEYDAESSSTESAKLDENENEG
ERMKKSKKAANASFLDH
BO07435.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9747-PB | 461 | CG9747-PB | 1..461 | 1..461 | 2507 | 100 | Plus |
| CG9747-PA | 461 | CG9747-PA | 1..461 | 1..461 | 2507 | 100 | Plus |
| Desat1-PD | 383 | CG5887-PD | 70..377 | 107..410 | 887 | 51.8 | Plus |
| Desat1-PB | 383 | CG5887-PB | 70..377 | 107..410 | 887 | 51.8 | Plus |
| Desat1-PE | 383 | CG5887-PE | 70..377 | 107..410 | 887 | 51.8 | Plus |
