Clone Sequence Records
BO07439.3prime Sequence
934 bp (852 high quality bases) assembled on 2006-01-06
> BO07439.3prime
ATGGTCTAGAAAGCTTGCTGGGTCTCGAAAGGAGATGGGCGGAAAAAGCC
GCGGCCACTGCACGAACTCGACGCCGTAGTGCAGGATGCCCGTGGCACTG
ACAGCGATCATTGCGCCCCAGAAGAGCATGAACAGCAGGTTCTCCGTGTT
AAACTCGGCCGGATAGGTCATCGTGATCATGAACATGGCCACAGCCACAA
GCAGCACCGAGGGGAAGGTGAAGAACCGCCAGCCATGCTTCGACTCCAGC
GGCGATGGCACGGCACCGCCCTCGTTGTCGTTGACCAGATACTTTCCAAG
GAAAAGATCGATGCTGTCTTGCCGCTGGCCATCGGCGAAGTTGTTCAGAT
AGTAGCGCATCAGCGAGTTCTTGCCGTCCTGCATGGCACCAGACTTGGTC
CTCTTGCCCGTCCTGGTGAAGTCGGTCTTGAGCGCACACGTTCCGGAATA
TTGTAGCGACACCAGATCCGCGTTGTCCGCCCACACGCCCTTGAAAATGC
TCTCGAAAATGTCGGAGGCATGTTCCACTTTCTGGCCCACATGAAGCACT
CCCAGCTTCTGGAGCACCGCAGTGAGGGACCTGCGGGCCAGCATGCTCTG
CACGACGTTCGTCCTATCGAGACAGTCGATACAATTCGTTCGGAAGACAC
CAGTCTGCGTGGACACCAATTTGCCGTCGTCGAAGACATGATAGACACCG
AACTGATCCTGCTCATGGGCGAGGCGATCGATGAGTATGTTCAGCCGGTC
CCAGCGCATCTTACGGCACTCGCTGTGGAAGTCGAAAGACTCGTATCGCA
CTTGTGGGATTTCCATTTCTCGAACCAGGCGGGCATAGGTCGCCTCGAGC
TCGCCTTCGGCACCTTTGTGATCCACTAGATTCACAGCCACATTGTTGCC
ATACAGCCGGATCTGTTCCTTAAGTGGAGCCCGC
BO07439.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9128-PA | 1779 | Sac1-RA | 872..1776 | 923..19 | 4450 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sac1-RB | 2327 | CG9128-RB | 1026..1942 | 934..19 | 4515 | 99.7 | Minus |
| Sac1-RA | 2365 | CG9128-RA | 1064..1980 | 934..19 | 4515 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1249150..1250066 | 934..19 | 4490 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:13:17 has no hits.
BO07439.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:37 Download gff for
BO07439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-PA | 860..1779 | 16..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:48 Download gff for
BO07439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9128-PA | 860..1779 | 16..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:10 Download gff for
BO07439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 1064..1987 | 11..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:35 Download gff for
BO07439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 1064..1987 | 11..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:35 Download gff for
BO07439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1249150..1250073 | 11..934 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:10 Download gff for
BO07439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1249150..1250073 | 11..934 | 99 | | Minus |
BO07439.5prime Sequence
912 bp (846 high quality bases) assembled on 2006-01-06
> BO07439.5prime
GAAGTTATCAGTCGACATGGACAGCAGGGAGGAGAACGCCGTGTACGATG
ACATGAACCTGTACATCGCACCGCAGAGCTTCATCATCGAGCCGAATGGA
GGAGATGAGTTGCTGGTCATCGGGCGCCACGACAAAGTCACCAGGGTTCA
GCCAGCGAGCGGAGGTCTTGTGGCCAACCTTCGCCCCACCAGGAGGATTT
GTGGTGTGCTGGGAACCATTCACCTACTGAGCTGCGACTACCTTCTGGTG
GCGACCCACCGCCTCTTCGTGGGCGTGCTCAATGGCGCAGTTGTGTGGAG
ATTAGCGGGCTATGACATCATACCTTACATTCCGAATTCCTTCCAGCGCA
AGGAGAACGAAAACTACTTGCGACTGCTACGCCAGACACTTGACACCAAG
TTCTTTTACTTCTCCTACCGCTACGACCTTACCAATTCGCTGCAGCGACA
GCGGGAGGTGGCACAATCGCGGCCTGAAGTATCCGGGTTGCTCCAGCGCG
CTGAGCAGCGATTCGTTTGGAATGGCTATGTGCTGCGGCAGTTCAACTGC
GATAAGATGGAGAAGTTCCAGCTGCCACTCGTCCTGGGCTTCGTGTCTAT
CAACCAGGTGCAGATCAACGGGCAGACATTCTTCTGGAGCATCATCACCA
GGCGTTCCGTGCAGCGGGCGGGCACACGGCTCTTCTGCCGAGGCAGCGAC
GAGCAGGGCCATGTTGCGAACTTCGTAGAGACCGAGCAAATAGTGGAGTT
CAACGGGCAGCTGACTGGATTCGTGCAGACACGAGGCAGCATGCCCTTCC
ACTGGCACCAGCTGCCCAATTTGCGCTATAAGCCACGACCCGTTCTGGTG
CCGGGCAAGGATCATTTTGGCGCCTGCGGGCTCCACTTTAAGGAACAGAT
CCGGCTGTATGG
BO07439.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9128-PA | 1779 | Sac1-RA | 1..896 | 17..912 | 4430 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sac1-RB | 2327 | CG9128-RB | 166..1062 | 16..912 | 4455 | 99.8 | Plus |
| Sac1-RA | 2365 | CG9128-RA | 204..1100 | 16..912 | 4455 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1248290..1249186 | 16..912 | 4455 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:20:43 has no hits.
BO07439.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:38 Download gff for
BO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:50 Download gff for
BO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9128-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:20 Download gff for
BO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 204..1100 | 16..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:37 Download gff for
BO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 204..1100 | 16..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:37 Download gff for
BO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1248290..1249186 | 16..912 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:20 Download gff for
BO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1248290..1249186 | 16..912 | 99 | | Plus |
BO07439.complete Sequence
1810 bp (1810 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630786
> BO07439.complete
GAAGTTATCAGTCGACATGGACAGCAGGGAGGAGAACGCCGTGTACGATG
ACATGAACCTGTACATCGCACCGCAGAGCTTCATCATCGAGCCGAATGGA
GGAGATGAGTTGCTGGTCATCGGGCGCCACGACAAAGTCACCAGGGTTCA
GCCAGCGAGCGGAGGTCTTGTGGCCAACCTTCGCCCCACCAGGAGGATTT
GTGGTGTGCTGGGAACCATTCACCTACTGAGCTGCGACTACCTTCTGGTG
GCGACCCACCGCCTCTTCGTGGGCGTGCTCAATGGCGCAGTTGTGTGGAG
ATTAGCGGGCTATGACATCATACCTTACATTCCGAATTCCTTCCAGCGCA
AGGAGAACGAAAACTACTTGCGACTGCTACGCCAGACACTTGACACCAAG
TTCTTTTACTTCTCCTACCGCTACGACCTTACCAATTCGCTGCAGCGACA
GCGGGAGGTGGCACAATCGCGGCCTGAAGTATCCGGGTTGCTCCAGCGCG
CTGAGCAGCGATTCGTTTGGAATGGCTATGTGCTGCGGCAGTTCAACTGC
GATAAGATGGAGAAGTTCCAGCTGCCACTCGTCCTGGGCTTCGTGTCTAT
CAACCAGGTGCAGATCAACGGGCAGACATTCTTCTGGAGCATCATCACCA
GGCGTTCCGTGCAGCGGGCGGGCACACGGCTCTTCTGCCGAGGCAGCGAC
GAGCAGGGCCATGTTGCGAACTTCGTAGAGACCGAGCAAATAGTGGAGTT
CAACGGGCAGCTGACTGGATTCGTGCAGACACGAGGCAGCATGCCCTTCC
ACTGGCACCAGCTGCCCAATTTGCGCTATAAGCCACGACCCGTTCTGGTG
CCGGGCAAGGATCATTTGGCCGCCTGCGGGCTCCACTTTAAGGAACAGAT
CCGGCTGTATGGCAACAATGTGGCTGTGAATCTAGTGGATCACAAAGGTG
CCGAAGGCGAGCTCGAGGCGACCTATGCCCGCCTGGTTCGAGAAATGGGA
AATCCACAAGTGCGATACGAGTCTTTCGACTTCCACAGCGAGTGCCGTAA
GATGCGCTGGGACCGGCTGAACATACTCATCGATCGCCTCGCCCATGAGC
AGGATCAGTTCGGTGTCTATCATGTCTTCGACGACGGCAAATTGGTGTCC
ACGCAGACTGGTGTCTTCCGAACGAATTGTATCGACTGTCTCGATAGGAC
GAACGTCGTGCAGAGCATGCTGGCCCGCAGGTCCCTCACTGCGGTGCTCC
AGAAGCTGGGAGTGCTTCATGTGGGCCAGAAAGTGGAACATGCCTCCGAC
ATTTTCGAGAGCATTTTCAAGGGCGTGTGGGCGGACAACGCGGATCTGGT
GTCGCTACAATATTCCGGAACGTGTGCGCTCAAGACCGACTTCACCAGGA
CGGGCAAGAGGACCAAGTCTGGTGCCATGCAGGACGGCAAGAACTCGCTG
ATGCGCTACTATCTGAACAACTTCGCCGATGGCCAGCGGCAAGACAGCAT
CGATCTTTTCCTTGGAAAGTATCTGGTCAACGACAACGAGGGCGGTGCCG
TGCCATCGCCGCTGGAGTCGAAGCATGGCTGGCGGTTCTTCACCTTCCCC
TCGGTGCTGCTTGTGGCTGTGGCCATGTTCATGATCACGATGACCTATCC
GGCCGAGTTTAACACGGAGAACCTGCTGTTCATGCTCTTCTGGGGCGCAA
TGATCGCTGTCAGTGCCACGGGCATCCTGCACTACGGCGTCGAGTTCGTG
CAGTGGCCGCGGCTTTTTCCGCCCATCTCCTTTCGAGACCCAGCAAGCTT
TCTAGACCAT
BO07439.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:04:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sac1-RB | 1779 | CG9128-PB | 1..1776 | 17..1792 | 8880 | 100 | Plus |
| Sac1-RA | 1779 | CG9128-PA | 1..1776 | 17..1792 | 8880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sac1-RB | 2327 | CG9128-RB | 166..1942 | 16..1792 | 8885 | 100 | Plus |
| Sac1-RA | 2365 | CG9128-RA | 204..1980 | 16..1792 | 8885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1248290..1250066 | 16..1792 | 8885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:04:15 has no hits.
BO07439.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:12 Download gff for
BO07439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 1..1779 | 17..1795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:13 Download gff for
BO07439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 205..1988 | 16..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:11:35 Download gff for
BO07439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 205..1980 | 17..1794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:12 Download gff for
BO07439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 205..1988 | 16..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:05 Download gff for
BO07439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sac1-RA | 205..1980 | 17..1794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:05 Download gff for
BO07439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1248291..1250066 | 17..1794 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:11:35 Download gff for
BO07439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1248291..1250066 | 17..1794 | 99 | | Plus |
BO07439.pep Sequence
Translation from 16 to 1810
> BO07439.pep
MDSREENAVYDDMNLYIAPQSFIIEPNGGDELLVIGRHDKVTRVQPASGG
LVANLRPTRRICGVLGTIHLLSCDYLLVATHRLFVGVLNGAVVWRLAGYD
IIPYIPNSFQRKENENYLRLLRQTLDTKFFYFSYRYDLTNSLQRQREVAQ
SRPEVSGLLQRAEQRFVWNGYVLRQFNCDKMEKFQLPLVLGFVSINQVQI
NGQTFFWSIITRRSVQRAGTRLFCRGSDEQGHVANFVETEQIVEFNGQLT
GFVQTRGSMPFHWHQLPNLRYKPRPVLVPGKDHLAACGLHFKEQIRLYGN
NVAVNLVDHKGAEGELEATYARLVREMGNPQVRYESFDFHSECRKMRWDR
LNILIDRLAHEQDQFGVYHVFDDGKLVSTQTGVFRTNCIDCLDRTNVVQS
MLARRSLTAVLQKLGVLHVGQKVEHASDIFESIFKGVWADNADLVSLQYS
GTCALKTDFTRTGKRTKSGAMQDGKNSLMRYYLNNFADGQRQDSIDLFLG
KYLVNDNEGGAVPSPLESKHGWRFFTFPSVLLVAVAMFMITMTYPAEFNT
ENLLFMLFWGAMIAVSATGILHYGVEFVQWPRLFPPISFRDPASFLDH
BO07439.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sac1-PB | 592 | CG9128-PB | 1..592 | 1..592 | 3127 | 100 | Plus |
| Sac1-PA | 592 | CG9128-PA | 1..592 | 1..592 | 3127 | 100 | Plus |
| CG7956-PG | 987 | CG7956-PG | 184..572 | 106..507 | 699 | 38.9 | Plus |
| CG7956-PA | 1000 | CG7956-PA | 184..572 | 106..507 | 699 | 38.9 | Plus |
| CG7956-PE | 662 | CG7956-PE | 184..568 | 106..503 | 692 | 39.1 | Plus |
