Clone Sequence Records
BO07440.3prime Sequence
929 bp (831 high quality bases) assembled on 2006-01-06
> BO07440.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCCAAGCACTAGCCGACGAGGTCTTCG
AGTAGTTCTGACTCTTCTGCTGCTGGTAGTTCTGCTTGATGTCCGACTTC
TTGGTACTCGAGTAATTCGATCCCATGCCCGAATTGCTGCTGGTGCCATT
GTAGCTGAAGCTGGACTTAAAGGTGGGGTTGCCAATGCTCTTGAACATCG
GATGATTCTTGCCGGCGCCCACCGGCGGAGCCGACTGATTGTAGTAGCTC
TTCGTGCTATTCTGCTGTCCCTTGTCGTTGGACATTTGACGAACGTAGGA
GGAGAGTCCCAACCCCACAGCGCCCATGCCCATTCCGACGCCCACGCCAA
CGGTGCTCACGCCCACTCCGCCCATTCCCACGCCGTAGGACTGCTGCTTG
TGGCTGGTGCTGAAGGTGGCCGCCTGATGGTCACTGGCCAGAGATCCGCT
CTGTGTGTAGAACTGCTGCTGCACCTCCACTATGTAGCGATAGGCCTCCT
CCATGCTCTTGGGATTCCGGCGCAGGATCATCGAGTGCGTCGGCTCGGGC
AGATGATCTCGGAACACCTGCAGCGTGATGCGCTCTATGTCCTCGAGACT
GTACAGGGTGTCATTGTGCGTGAGCTTTCTATTGATCAGTCTGTGCTTGA
GTTTGGCCATCTTCTGGTAGTACAACTCTATGTTCGAGTCCAAGACAGCG
CTGCGTATCTTGTGTATCAGCGAGTAGCTAGACTCCCGCTCCGCATAGTT
GTACAGCAGTTGATCCTTGAGTTTTAGCCAGGACTCGGCCTTCAGGAGAT
GACCATTCCCGCCGCCATTGCCATTGCCATTGCCCACGGGAGCGCTCATT
TGTCGCGTGAAGACCGCCTCCTGCCGCGATCTGTGCACTTATTTTTGATA
TGTCCTATCAATTGAAACTTGTAGTAGTC
BO07440.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4680-PA | 1059 | CG4680-RA | 204..1056 | 871..19 | 4265 | 100 | Minus |
| CG4680-PA | 1059 | CG4680-RA | 145..199 | 929..875 | 275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grp-RB | 2295 | CG4680-RB | 509..1420 | 929..19 | 4520 | 99.8 | Minus |
| Grp-RA | 1505 | CG4680-RA | 257..1168 | 929..19 | 4520 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16395094..16396005 | 929..19 | 4495 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-04 20:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blood | 7410 | blood BLOOD 7410bp | 620..722 | 901..799 | 110 | 56.3 | Minus |
BO07440.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:39 Download gff for
BO07440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4680-PA | 145..1059 | 18..929 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:51 Download gff for
BO07440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4680-PA | 145..1059 | 18..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:25:19 Download gff for
BO07440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grp-RA | 466..1377 | 19..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:49:21 Download gff for
BO07440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grp-RA | 257..1168 | 19..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:49:21 Download gff for
BO07440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16395094..16396005 | 19..929 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:25:19 Download gff for
BO07440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16388194..16389105 | 19..929 | 99 | | Minus |
BO07440.5prime Sequence
801 bp (800 high quality bases) assembled on 2006-01-06
> BO07440.5prime
GAAGTTATCAGTCGACATGGATCCCGAGTTCGTGAACAAATACAATCAGG
TCCTTAGCCGTCTGAAGCTAGTGGAGAACTTCGATGGCAGTGATCCTGGC
AAGCTGCCGCAGTTCCTGCACAAAATCGAGGCCCTTATGCCGGCCATAAA
TAGTTTCGACGACTACTACAAGTTTCAATTGATAGGACATATCAAAAATA
AGTGCACAGATCGCGCCAGGGAGGCGGTCTTCACGCGACAAATGAGCGCT
CCCGTGGGCAATGGCAATGGCAATGGCGGCGGGAATGGTCATCTCCTGAA
GGCCGAGTCCTGGCTAAAACTCAAGGATCAACTGCTGTACAACTATGCGG
AGCGGGAGTCTAGCTACTCGCTGATACACAAGATACGCAGCGCTGTCTTG
GACTCGAACATAGAGTTGTACTACCAGAAGATGGCCAAACTCAAGCACAG
ACTGATCAATAGAAAGCTCACGCACAATGACACCCTGTACAGTCTCGAGG
ACATAGAGCGCATCACGCTGCAGGTGTTCCGAGATCATCTGCCCGAGCCG
ACGCACTCGATGATCCTGCGCCGGAATCCCAAGAGCATGGAGGAGGCCTA
TCGCTACATAGTGGAGGTGCAGCAGCAGTTCTACACACAGAGCGGATCTC
TGGCCAGTGACCATCAGGCGGCCACCTTCAGCACCAGCCACAAGCAGCAG
TCCTACGGCGTGGGAATGGGCGGAGTGGGCGTGAGCACCGTTGGCGTGGG
CGTCGGAATGGGCATGGGCGCTGTGGGGTTGGGACTCTCCTCCTACGTTC
G
BO07440.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4680-PA | 1059 | CG4680-RA | 1..785 | 17..801 | 3925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grp-RB | 2295 | CG4680-RB | 365..1149 | 17..801 | 3925 | 100 | Plus |
| Grp-RA | 1505 | CG4680-RA | 113..897 | 17..801 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16394950..16395734 | 17..801 | 3925 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:27:04 has no hits.
BO07440.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:40 Download gff for
BO07440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4680-PA | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:52 Download gff for
BO07440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4680-PA | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:25:42 Download gff for
BO07440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grp-RA | 311..1106 | 7..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:33 Download gff for
BO07440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grp-RA | 102..897 | 7..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:33 Download gff for
BO07440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16394939..16395734 | 7..801 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:25:42 Download gff for
BO07440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16388039..16388834 | 7..801 | 99 | | Plus |
BO07440.complete Sequence
1090 bp (1090 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638648
> BO07440.complete
GAAGTTATCAGTCGACATGGATCCCGAGTTCGTGAACAAATACAATCAGG
TCCTTAGCCGTCTGAAGCTAGTGGAGAACTTCGATGGCAGTGATCCTGGC
AAGCTGCCGCAGTTCCTGCACAAAATCGAGGCCCTTATGCCGGCCATAAA
TAGTTTCGACGACTACTACAAGTTTCAATTGATAGGACATATCAAAAATA
AGTGCACAGATCGCGCCAGGGAGGCGGTCTTCACGCGACAAATGAGCGCT
CCCGTGGGCAATGGCAATGGCAATGGCGGCGGGAATGGTCATCTCCTGAA
GGCCGAGTCCTGGCTAAAACTCAAGGATCAACTGCTGTACAACTATGCGG
AGCGGGAGTCTAGCTACTCGCTGATACACAAGATACGCAGCGCTGTCTTG
GACTCGAACATAGAGTTGTACTACCAGAAGATGGCCAAACTCAAGCACAG
ACTGATCAATAGAAAGCTCACGCACAATGACACCCTGTACAGTCTCGAGG
ACATAGAGCGCATCACGCTGCAGGTGTTCCGAGATCATCTGCCCGAGCCG
ACGCACTCGATGATCCTGCGCCGGAATCCCAAGAGCATGGAGGAGGCCTA
TCGCTACATAGTGGAGGTGCAGCAGCAGTTCTACACACAGAGCGGATCTC
TGGCCAGTGACCATCAGGCGGCCACCTTCAGCACCAGCCACAAGCAGCAG
TCCTACGGCGTGGGAATGGGCGGAGTGGGCGTGAGCACCGTTGGCGTGGG
CGTCGGAATGGGCATGGGCGCTGTGGGGTTGGGACTCTCCTCCTACGTTC
GTCAAATGTCCAACGACAAGGGACAGCAGAATAGCACGAAGAGCTACTAC
AATCAGTCGGCTCCGCCGGTGGGCGCCGGCAAGAATCATCCGATGTTCAA
GAGCATTGGCAACCCCACCTTTAAGTCCAGCTTCAGCTACAATGGCACCA
GCAGCAATTCGGGCATGGGATCGAATTACTCGAGTACCAAGAAGTCGGAC
ATCAAGCAGAACTACCAGCAGCAGAAGAGTCAGAACTACTCGAAGACCTC
GTCGGCTAGTGCTTGGAAGAAGGCAAGCTTTCTAGACCAT
BO07440.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grp-RB | 1059 | CG4680-PB | 1..1056 | 17..1072 | 5280 | 100 | Plus |
| Grp-RA | 1059 | CG4680-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grp-RB | 2295 | CG4680-RB | 365..1420 | 17..1072 | 5280 | 100 | Plus |
| Grp-RA | 1505 | CG4680-RA | 113..1168 | 17..1072 | 5280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16394950..16396005 | 17..1072 | 5280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:19:31 has no hits.
BO07440.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:28 Download gff for
BO07440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4680-RA | 1..1059 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:23 Download gff for
BO07440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4680-RA | 311..1377 | 7..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:11 Download gff for
BO07440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grp-RA | 322..1377 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:28 Download gff for
BO07440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4680-RA | 311..1377 | 7..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:50 Download gff for
BO07440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grp-RA | 113..1168 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:50 Download gff for
BO07440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16394950..16396005 | 17..1074 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:11 Download gff for
BO07440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16388050..16389105 | 17..1074 | 99 | | Plus |
BO07440.pep Sequence
Translation from 16 to 1090
> BO07440.pep
MDPEFVNKYNQVLSRLKLVENFDGSDPGKLPQFLHKIEALMPAINSFDDY
YKFQLIGHIKNKCTDRAREAVFTRQMSAPVGNGNGNGGGNGHLLKAESWL
KLKDQLLYNYAERESSYSLIHKIRSAVLDSNIELYYQKMAKLKHRLINRK
LTHNDTLYSLEDIERITLQVFRDHLPEPTHSMILRRNPKSMEEAYRYIVE
VQQQFYTQSGSLASDHQAATFSTSHKQQSYGVGMGGVGVSTVGVGVGMGM
GAVGLGLSSYVRQMSNDKGQQNSTKSYYNQSAPPVGAGKNHPMFKSIGNP
TFKSSFSYNGTSSNSGMGSNYSSTKKSDIKQNYQQQKSQNYSKTSSASAW
KKASFLDH
BO07440.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grp-PB | 352 | CG4680-PB | 1..352 | 1..352 | 1834 | 100 | Plus |
| Grp-PA | 352 | CG4680-PA | 1..352 | 1..352 | 1834 | 100 | Plus |
