Clone Sequence Records
BO07445.3prime Sequence
910 bp (763 high quality bases) assembled on 2006-01-06
> BO07445.3prime
ATGGTCTAGAAAGCTTGCCCACCGGGGACTACGTCGATTTGGTTCGGAAC
GCTCGTATTGGATGCTCTTGAAGCGGCTACTTGCCTCCAGATGCAGCTGC
TGCTGTTTCGGTTCCGGATGTCCACGAGTGACAATGTCTTTCCAAATCAT
GGTCAAAAGTATGAAGATAGCACCCACAATCTTGTTCAGAAACTCGATTA
GTTTAAACACTATTGGAGTGGCTGTATGTGTGAAACGACTCAGCTCAAAC
AGGAATCGCACAGCAAATACGCCTAGGAATCGTAGCGCTAGTGCGGCTCC
ACCCAAGGCAGAGAAAATTAGTAGACCCAGAAACCGAATGGTGCCCAAAA
TGTTCCTCTTGTTGACATCGTTGGTCATGAAGTCGTACACGGTTTGTTTG
ACTCCATCACCCCACTGTTGCAGCACAGCCAAAAAATCATTAAGGCCCAG
CTGAATTTGCTCCGCCACTTCATCCGGCTTGGAGGAGGAGTTTTCCCCAC
CCGCTGTGATCGCCTTAACAGGGCTACTTCTATTAAGAATCAGTGATCTC
CTCGGCGTCGCCATCAGCTCTGGCTCCACGGGCCTTATCATCTTCAGTTT
GAACTGGACTTCATGGTCCCGGAAGCGAAGGGTCTTGATGCTAAACCAAT
ACTCTCCAAAAGCCAGATCATTCATCTCTGTCCAGATGCAGGTTTCCAGT
TGACCAGGATCTGCTTTGTGCTGGTAACTTCCGTAACTCCCATAGGTGAT
GCCCACCCACATATTGGGCACGAAGCGTTGATAAAACTTTTGTAATTGGC
CGGCACTCGAGTGCAGCAGCTTCTCCAACTCTCGCTCACTGCGTTGAAGC
ACCACCACGTCCCGGTAGCCGGACACCTGCTCCACCAAGCAGCGTTCCAT
ATAATAACCG
BO07445.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-PA | 1002 | CG4287-RA | 108..999 | 910..19 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-RB | 1644 | CG4287-RB | 379..1270 | 910..19 | 4460 | 100 | Minus |
| CG4287-RA | 1648 | CG4287-RA | 383..1274 | 910..19 | 4460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15962541..15963432 | 19..910 | 4460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:42:03 has no hits.
BO07445.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:48 Download gff for
BO07445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-PA | 108..1002 | 16..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:03 Download gff for
BO07445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-PA | 108..1002 | 16..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:55:55 Download gff for
BO07445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RA | 365..1256 | 19..910 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:14 Download gff for
BO07445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RA | 383..1274 | 19..910 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:14 Download gff for
BO07445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15962541..15963432 | 19..910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:55:55 Download gff for
BO07445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11788263..11789154 | 19..910 | 100 | | Plus |
BO07445.5prime Sequence
919 bp (846 high quality bases) assembled on 2006-01-06
> BO07445.5prime
GAAGTTATCAGTCGACATGGACAACAGCGCGTTGATGCCACAGGCGAGCG
GACGTCATATGCCGCCCGAGGAACTGGCCATGCAAGCACTAACCAAGCAG
CTTTACAAGTCTCGTCTCTTCCGCGGTTATTATATGGAACGCTGCTTGGT
GGAGCAGGTGTCCGGCTACCGGGACGTGGTGGTGCTTCAACGCAGTGAGC
GAGAGTTGGAGAAGCTGCTGCACTCGAGTGCCGGCCAATTACAAAAGTTT
TATCAACGCTTCGTGCCCAATATGTGGGTGGGCATCACCTATGGGAGTTA
CGGAAGTTACCAGCACAAAGCAGATCCTGGTCAACTGGAAACCTGCATCT
GGACAGAGATGAATGATCTGGCTTTTGGAGAGTATTGGTTTAGCATCAAG
ACCCTTCGCTTCCGGGACCATGAAGTCCAGTTCAAACTGAAGATGATAAG
GCCCGTGGAGCCAGAGCTGATGGCGACGCCGAGGAGATCACTGATTCTTA
ATAGAAGTAGCCCTGTTAAGGCGATCACAGCGGGTGGGGAAAACTCCTCC
TCCAAGCCGGATGAAGTGGCGGAGCAAATTCAGCTGGGCCTTAATGATTT
TTTGGCTGTGCTGCAACAGTGGGGTGATGGAGTCAAACAAACCGTGTACG
ACTTCATGACCAACGATGTCAACAAGAGGAACATTTTGGGCACCATTCGG
TTTCTGGGTCTACTAATTTTCTCTGCCTTGGGTGGAGCCGCACTAGCGCT
ACGATTCCTAGGCGTATTTGCTGTGCGATTCCTGTTTGAGCTGAGTCGTT
TCACACATACAGCCACTCCAATAGTGTTTAAACTAATCGAGTTTCTGAAC
AAGATTGTGGGTGCTATCTTCATACTTTTGACCATGATTTGAAAGACATT
GTCACTCGTGGACATCCGG
BO07445.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-PA | 1002 | CG4287-RA | 1..875 | 17..891 | 4375 | 100 | Plus |
| CG4287-PA | 1002 | CG4287-RA | 876..904 | 891..919 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-RB | 1644 | CG4287-RB | 261..1175 | 6..919 | 4520 | 99.7 | Plus |
| CG4287-RA | 1648 | CG4287-RA | 275..1179 | 16..919 | 4500 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15962636..15963540 | 919..16 | 4475 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:46:50 has no hits.
BO07445.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:49 Download gff for
BO07445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-PA | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:05 Download gff for
BO07445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-PA | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:34 Download gff for
BO07445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RB | 243..1157 | 6..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:17:05 Download gff for
BO07445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RB | 261..1175 | 6..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:17:05 Download gff for
BO07445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15962636..15963548 | 9..919 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:34 Download gff for
BO07445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11788358..11789270 | 9..919 | 99 | | Minus |
BO07445.complete Sequence
1033 bp (1033 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630787
> BO07445.complete
GAAGTTATCAGTCGACATGGACAACAGCGCGTTGATGCCACAGGCGAGCG
GACGTCATATGCCGCCCGAGGAACTGGCCATGCAAGCACTAACCAAGCAG
CTTTACAAGTCTCGTCTCTTCCGCGGTTATTATATGGAACGCTGCTTGGT
GGAGCAGGTGTCCGGCTACCGGGACGTGGTGGTGCTTCAACGCAGTGAGC
GAGAGTTGGAGAAGCTGCTGCACTCGAGTGCCGGCCAATTACAAAAGTTT
TATCAACGCTTCGTGCCCAATATGTGGGTGGGCATCACCTATGGGAGTTA
CGGAAGTTACCAGCACAAAGCAGATCCTGGTCAACTGGAAACCTGCATCT
GGACAGAGATGAATGATCTGGCTTTTGGAGAGTATTGGTTTAGCATCAAG
ACCCTTCGCTTCCGGGACCATGAAGTCCAGTTCAAACTGAAGATGATAAG
GCCCGTGGAGCCAGAGCTGATGGCGACGCCGAGGAGATCACTGATTCTTA
ATAGAAGTAGCCCTGTTAAGGCGATCACAGCGGGTGGGGAAAACTCCTCC
TCCAAGCCGGATGAAGTGGCGGAGCAAATTCAGCTGGGCCTTAATGATTT
TTTGGCTGTGCTGCAACAGTGGGGTGATGGAGTCAAACAAACCGTGTACG
ACTTCATGACCAACGATGTCAACAAGAGGAACATTTTGGGCACCATTCGG
TTTCTGGGTCTACTAATTTTCTCTGCCTTGGGTGGAGCCGCACTAGCGCT
ACGATTCCTAGGCGTATTTGCTGTGCGATTCCTGTTTGAGCTGAGTCGTT
TCACACATACAGCCACTCCAATAGTGTTTAAACTAATCGAGTTTCTGAAC
AAGATTGTGGGTGCTATCTTCATACTTTTGACCATGATTTGGAAAGACAT
TGTCACTCGTGGACATCCGGAACCGAAACAGCAGCAGCTGCATCTGGAGG
CAAGTAGCCGCTTCAAGAGCATCCAATACGAGCGTTCCGAACCAAATCGA
CGTAGTCCCCGGTGGGCAAGCTTTCTAGACCAT
BO07445.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-RB | 1002 | CG4287-PB | 1..999 | 17..1015 | 4995 | 100 | Plus |
| CG4287-RA | 1002 | CG4287-PA | 1..999 | 17..1015 | 4995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-RB | 1644 | CG4287-RB | 261..1270 | 6..1015 | 5020 | 99.8 | Plus |
| CG4287-RA | 1648 | CG4287-RA | 275..1274 | 16..1015 | 5000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15962541..15963540 | 1015..16 | 5000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:54:37 has no hits.
BO07445.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:31 Download gff for
BO07445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RA | 1..1002 | 17..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:27 Download gff for
BO07445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RA | 248..1256 | 7..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:34 Download gff for
BO07445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RB | 254..1252 | 17..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:31 Download gff for
BO07445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RA | 248..1256 | 7..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:34 Download gff for
BO07445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RB | 272..1270 | 17..1017 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:34 Download gff for
BO07445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15962537..15963539 | 17..1017 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:34 Download gff for
BO07445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11788259..11789261 | 17..1017 | 99 | | Minus |
BO07445.pep Sequence
Translation from 16 to 1033
> BO07445.pep
MDNSALMPQASGRHMPPEELAMQALTKQLYKSRLFRGYYMERCLVEQVSG
YRDVVVLQRSERELEKLLHSSAGQLQKFYQRFVPNMWVGITYGSYGSYQH
KADPGQLETCIWTEMNDLAFGEYWFSIKTLRFRDHEVQFKLKMIRPVEPE
LMATPRRSLILNRSSPVKAITAGGENSSSKPDEVAEQIQLGLNDFLAVLQ
QWGDGVKQTVYDFMTNDVNKRNILGTIRFLGLLIFSALGGAALALRFLGV
FAVRFLFELSRFTHTATPIVFKLIEFLNKIVGAIFILLTMIWKDIVTRGH
PEPKQQQLHLEASSRFKSIQYERSEPNRRSPRWASFLDH
BO07445.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-PB | 333 | CG4287-PB | 1..333 | 1..333 | 1726 | 100 | Plus |
| CG4287-PA | 333 | CG4287-PA | 1..333 | 1..333 | 1726 | 100 | Plus |
