Clone Sequence Records
BO07448.3prime Sequence
929 bp (841 high quality bases) assembled on 2006-01-06
> BO07448.3prime
ATGGTCTAGAAAGCTTGCCTTGCTGGCCTCCTGCTGTTCGAACAGAGGAT
ACTGTTCGGTGACACTCTCCCAGGTGGTTCTCGCCGTCGACAAGTCCTTG
ACGACGCCCACAACCTCCTCCAGACCGACGCGCACCTGTTTCATAGTATT
CCGATCTCGCAGAGTCACCGTATGCGGTTCCTTTAGAGTGTCGAAGTCCA
CGGTGATGCCATAGGGTATGGCAATCTCATCCGTGCGGGCATACCGCCTG
CCAATGGATCCACTGGAGTCGTCCACCTTGTGCGAAAGTTCCGCCTTGGT
CAGGGCAGAAGACAGTTTCTGAGTATAAGGTTGAAAGTCGGTGTTGTTGG
ACAGCGGAAGGATGGAGCACTTGATGGGCGCCACCAGAGGCGGTAGCGTA
AAGTAGCACCGCTGCTCGTCGCCGTCGCGGCATTGGAAACTGTGCTCCAA
CAGGGAGTACATGATGCGACCAATGCCGAATGAAGGCTCAACCACACTCG
GGATGAACTCCTCCACATGGACCGTTTTCGTAGAGTGCTTAACGCTGATG
GTGTCCTTTCCGAGATCGTGGCTTTGGCCATCGGCCGTGGTCAGTTTGTA
TTGACCATCGCCAGCCAGCTGTTCCTCTACCTTGGTTATCTCCTCCAGCG
AAAGCTTAGCCAACGCATCCGTGATGTTCTTTGCCTCCTTCTTGAAGGTC
TTTCCGAGAGCCTGCTTGTTTGGCACAATCTCGCTGACCTCGACCGTTTT
GGGAGCCGGCAGACGCTTCTCGGCCACCAAACGCACACCTGTGGCGGCCG
TATGCTGTCCCAAATCGTAGGCACTGCGATCCGCACATCCTACGCACTCC
ACCCATCCGTAGGAGGTAAGAATTTCGGCATCCCAGCAATCGCATGCATA
GTGAGCCATCTCATTGGACATGTGCTGCC
BO07448.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6778-PA | 2040 | Aats-gly-RA | 1127..2037 | 929..19 | 4555 | 100 | Minus |
| CG6778-PB | 2298 | Aats-gly-RB | 1385..2295 | 929..19 | 4555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-gly-RC | 2476 | CG6778-RC | 1436..2346 | 929..19 | 4555 | 100 | Minus |
| Aats-gly-RB | 2545 | CG6778-RB | 1505..2415 | 929..19 | 4555 | 100 | Minus |
| Aats-gly-RA | 2457 | CG6778-RA | 1417..2327 | 929..19 | 4555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:23:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15096646..15097556 | 929..19 | 4555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:23:56 has no hits.
BO07448.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:53 Download gff for
BO07448.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6778-PB | 1385..2298 | 15..929 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:11 Download gff for
BO07448.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6778-PB | 1385..2298 | 15..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:42 Download gff for
BO07448.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RA | 1417..2332 | 12..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:52:36 Download gff for
BO07448.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RA | 1417..2332 | 12..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:52:36 Download gff for
BO07448.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15096646..15097561 | 12..929 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:42 Download gff for
BO07448.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15089746..15090661 | 12..929 | 99 | | Minus |
BO07448.5prime Sequence
769 bp (768 high quality bases) assembled on 2006-01-06
> BO07448.5prime
GAAGTTATCAGTCGACATGTCGAATCCCGAGATTGAGGCTCAACTTGCCC
CATTGAGGGAACGAGTTCAGGAGCAGGGTAACCTGGTGAGGGATCTCAAG
GCGAAGGGTGCCCCCGAGATCGATGTGAAAAAGGCAGTAGCCGAGCTGAA
GGCACGCAAGAAGCTGCTGGAGGACAAAGAGCTCGCCCTGACCCCCAGTG
TCGTTAGTTTCGATCGCGCGAAGATGGAGGATCTACTCAAGCGTCGCTTC
TTCTACGACCAGAGTTTCGCAATTTATGGCGGCATCACCGGCCAGTACGA
TTTTGGACCCATGGGCTGTGCCCTCAAGTCCAACATTCTGGCCCTATGGC
GTCAGTATTTCGCCCTCGAAGAGCAAATGCTGGAGGTGGACTGCTCTATT
CTGACTCCCGAACCTGTGCTCAAAGCCTCTGGTCATGTGGAGCGTTTCGC
TGATCTGATGGTCAAGGATGTCAAGACCGGCGAGTGCTTCCGCCTGGATC
ATCTCATTAAGCAGGCTTTGGAAAAGCTATCTAAGGCCAAGGATGCAACT
CCCGCCCTGCAGGCCGAGTGTGAGGATATTATCATTAAACTGGATGGCCT
GAACAAACAGGAATTGGCTGGTGTCCTGGCCAAATACAACATCAAATCTC
CATTAACCGGCAATGATTTAACAGAACCGATTGAGTTCAACCTGATGTTT
GCCACCCAAATTGGACCCACTGGCTTGGTCAAGGGATTCCTGCGGCCCGA
AACTGCCCAGGGTATCTTC
BO07448.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6778-PB | 2298 | Aats-gly-RB | 258..1011 | 16..769 | 3770 | 100 | Plus |
| CG6778-PA | 2040 | Aats-gly-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-gly-RC | 2476 | CG6778-RC | 309..1062 | 16..769 | 3770 | 100 | Plus |
| Aats-gly-RB | 2545 | CG6778-RB | 378..1131 | 16..769 | 3770 | 100 | Plus |
| Aats-gly-RA | 2457 | CG6778-RA | 290..1043 | 16..769 | 3770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15095519..15096272 | 16..769 | 3770 | 100 | Plus |
Blast to na_te.dros performed 2015-02-09 19:35:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAHRE | 10463 | TAHRE OSV 10463bp | 1026..1067 | 680..721 | 111 | 73.8 | Plus |
BO07448.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:18:54 Download gff for
BO07448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6778-PB | 254..1011 | 12..769 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:13 Download gff for
BO07448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6778-PB | 254..1011 | 12..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:09:18 Download gff for
BO07448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RA | 286..1043 | 12..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:24 Download gff for
BO07448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RA | 286..1043 | 12..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:24 Download gff for
BO07448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15095515..15096272 | 12..769 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:09:18 Download gff for
BO07448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15088615..15089372 | 12..769 | 99 | | Plus |
BO07448.complete Sequence
2071 bp (2071 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630788
> BO07448.complete
GAAGTTATCAGTCGACATGTCGAATCCCGAGATTGAGGCTCAACTTGCCC
CATTGAGGGAACGAGTTCAGGAGCAGGGTAACCTGGTGAGGGATCTCAAG
GCGAAGGGTGCCCCCGAGATCGATGTGAAAAAGGCAGTAGCCGAGCTGAA
GGCACGCAAGAAGCTGCTGGAGGACAAAGAGCTCGCCCTGACCCCCAGTG
TCGTTAGTTTCGATCGCGCGAAGATGGAGGATCTACTCAAGCGTCGCTTC
TTCTACGACCAGAGTTTCGCAATTTATGGCGGCATCACCGGCCAGTACGA
TTTTGGACCCATGGGCTGTGCCCTCAAGTCCAACATTCTGGCCCTATGGC
GTCAGTATTTCGCCCTCGAAGAGCAAATGCTGGAGGTGGACTGCTCTATT
CTGACTCCCGAACCTGTGCTCAAAGCCTCTGGTCATGTGGAGCGTTTCGC
TGATCTGATGGTCAAGGATGTCAAGACCGGCGAGTGCTTCCGCCTGGATC
ATCTCATTAAGCAGGCTTTGGAAAAGCTATCTAAGGCCAAGGATGCAACT
CCCGCCCTGCAGGCCGAGTGTGAGGATATTATCATTAAACTGGATGGCCT
GAACAAACAGGAATTGGCTGGTGTCCTGGCCAAATACAACATCAAATCTC
CATTAACCGGCAATGATTTAACAGAACCGATTGAGTTCAACCTGATGTTT
GCCACCCAAATTGGACCCACTGGCTTGGTCAAGGGATTCCTGCGGCCCGA
AACTGCCCAGGGTATCTTCGTCAACTTCAAGCGACTGCTGGAATTCAATC
AAGGCAAGCTTCCCTTCGCTGTGGCTCAAATTGGCAACTCCTTCCGCAAT
GAAATCTCACCCCGATCGGGATTGATCCGTGTGCGAGAGTTCACCATGGC
AGAGATTGAACATTTCTGTGATCCCGTGCTCAAGGACCATCCCAAATTTG
GCAACATCAAATCGGAAAAGTTGACCCTTTACTCGGCGTGCAACCAGATG
GATGGAAAGTCTGCCGCTCAGGTGCAAATCGGCGAAGCAGTGGCATCCAA
ACTGGTGGCTAATGAGACACTTGGTTACTATATGGCCCGCATTCAGCAGT
TCCTGTTGGCCATTGGTATCAAACCGGAGTGCTTGCGATTCCGGCAGCAC
ATGTCCAATGAGATGGCTCACTATGCATGCGATTGCTGGGATGCCGAAAT
TCTTACCTCCTACGGATGGGTGGAGTGCGTAGGATGTGCGGATCGCAGTG
CCTACGATTTGGGACAGCATACGGCCGCCACAGGTGTGCGTTTGGTGGCC
GAGAAGCGTCTGCCGGCTCCCAAAACGGTCGAGGTCAGCGAGATTGTGCC
AAACAAGCAGGCTCTCGGAAAGACCTTCAAGAAGGAGGCAAAGAACATCA
CGGATGCGTTGGCTAAGCTTTCGCTGGAGGAGATAACCAAGGTAGAGGAA
CAGCTGGCTGGCGATGGTCAATACAAACTGACCACGGCCGATGGCCAAAG
CCACGATCTCGGAAAGGACACCATCAGCGTTAAGCACTCTACGAAAACGG
TCCATGTGGAGGAGTTCATCCCGAGTGTGGTTGAGCCTTCATTCGGCATT
GGTCGCATCATGTACTCCCTGTTGGAGCACAGTTTCCAATGCCGCGACGG
CGACGAGCAGCGGTGCTACTTTACGCTACCGCCTCTGGTGGCGCCCATCA
AGTGCTCCATCCTTCCGCTGTCCAACAACACCGACTTTCAACCTTATACT
CAGAAACTGTCTTCTGCCCTGACCAAGGCGGAACTTTCGCACAAGGTGGA
CGACTCCAGTGGATCCATTGGCAGGCGGTATGCCCGCACGGATGAGATTG
CCATACCCTATGGCATCACCGTGGACTTCGACACTCTAAAGGAACCGCAT
ACGGTGACTCTGCGAGATCGGAATACTATGAAACAGGTGCGCGTCGGTCT
GGAGGAGGTTGTGGGCGTCGTCAAGGACTTGTCGACGGCGAGAACCACCT
GGGAGAGTGTCACCGAACAGTATCCTCTGTTCGAACAGCAGGAGGCCAGC
AAGGCAAGCTTTCTAGACCAT
BO07448.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-gly-RC | 2298 | CG6778-PC | 258..2295 | 16..2053 | 10190 | 100 | Plus |
| Aats-gly-RB | 2298 | CG6778-PB | 258..2295 | 16..2053 | 10190 | 100 | Plus |
| Aats-gly-RA | 2040 | CG6778-PA | 1..2037 | 17..2053 | 10185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-gly-RC | 2476 | CG6778-RC | 309..2346 | 16..2053 | 10190 | 100 | Plus |
| Aats-gly-RB | 2545 | CG6778-RB | 378..2415 | 16..2053 | 10190 | 100 | Plus |
| Aats-gly-RA | 2457 | CG6778-RA | 290..2327 | 16..2053 | 10190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15095519..15097556 | 16..2053 | 10190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:51:22 has no hits.
BO07448.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:13 Download gff for
BO07448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RB | 254..2298 | 12..2057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:14 Download gff for
BO07448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RB | 334..2380 | 12..2060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:58 Download gff for
BO07448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RA | 291..2327 | 17..2055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:14 Download gff for
BO07448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RB | 334..2380 | 12..2060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:47 Download gff for
BO07448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RA | 291..2327 | 17..2055 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:47 Download gff for
BO07448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15095520..15097556 | 17..2055 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:58 Download gff for
BO07448.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15088620..15090656 | 17..2055 | 99 | | Plus |
BO07448.pep Sequence
Translation from 16 to 2071
> BO07448.pep
MSNPEIEAQLAPLRERVQEQGNLVRDLKAKGAPEIDVKKAVAELKARKKL
LEDKELALTPSVVSFDRAKMEDLLKRRFFYDQSFAIYGGITGQYDFGPMG
CALKSNILALWRQYFALEEQMLEVDCSILTPEPVLKASGHVERFADLMVK
DVKTGECFRLDHLIKQALEKLSKAKDATPALQAECEDIIIKLDGLNKQEL
AGVLAKYNIKSPLTGNDLTEPIEFNLMFATQIGPTGLVKGFLRPETAQGI
FVNFKRLLEFNQGKLPFAVAQIGNSFRNEISPRSGLIRVREFTMAEIEHF
CDPVLKDHPKFGNIKSEKLTLYSACNQMDGKSAAQVQIGEAVASKLVANE
TLGYYMARIQQFLLAIGIKPECLRFRQHMSNEMAHYACDCWDAEILTSYG
WVECVGCADRSAYDLGQHTAATGVRLVAEKRLPAPKTVEVSEIVPNKQAL
GKTFKKEAKNITDALAKLSLEEITKVEEQLAGDGQYKLTTADGQSHDLGK
DTISVKHSTKTVHVEEFIPSVVEPSFGIGRIMYSLLEHSFQCRDGDEQRC
YFTLPPLVAPIKCSILPLSNNTDFQPYTQKLSSALTKAELSHKVDDSSGS
IGRRYARTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVRVGLEEVVG
VVKDLSTARTTWESVTEQYPLFEQQEASKASFLDH
BO07448.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-gly-PC | 765 | CG6778-PC | 87..765 | 1..679 | 3490 | 100 | Plus |
| Aats-gly-PB | 765 | CG6778-PB | 87..765 | 1..679 | 3490 | 100 | Plus |
| Aats-gly-PA | 679 | CG6778-PA | 1..679 | 1..679 | 3490 | 100 | Plus |
