Clone Sequence Records
BO07451.3prime Sequence
835 bp (825 high quality bases) assembled on 2006-01-06
> BO07451.3prime
ATGGTCTAGAAAGCTTGCTGACCGCTTCACCTTGCCATTGGACGCATTCA
CCGAGGTCTGGGAGCGGTAGGAGGCTGCGCCTCCGCCGACAGCCATTTCG
GTCGCATGAGTGGCAACATGGTGGATGCCCTTCTCCATGCAGCCGTGATA
GATGGGTCGCATGAATTTCTCCCACAATAGCGTTGCAAAGTCATCCAACT
TGCCGCCAAAGTCGCTGAGCTCTCCGCTATATCTAATGTAGGCCCACAGA
GCCAGCGTTAGAAGCGCCACACCCATAACCAGGTTGCAGAAGTTGGCGAA
CGTATAGAGACCCACCAATCCAAAGATGCCGCTAAGGATGTACATGATGA
CGGCGCAGGCGAAGTACACCGCCGGTGTCCGTGCTGCCTTAAAGATGTTC
TTGCTCTCGTTGTGTGCTTGGTAGTTGGTGAAGACCTCCTCAAGATCATC
TTCCAGTTGCTTGCGGAATTTCTCGGTGAACTCCTCACCACCCATCTTGC
GCTTGGCGGCGAACTGGAACAGTGCCTTGTCCTTCACCCGCAGGTGCTCC
GTCTGGAGATGGGCGGTGCTTAAGTACGGCCGCGTTCCACCGCACACCTC
CTCCATGAGCTGTCCGTACAGCTCCTTGGCGGCGGCCACGGCAGTCAAAT
GGTTAGCCTCTGCGGTGGCCACCAGCATGCTCTTCGGCTCGGGCAGCTCG
TTGCCCTTGTAGATGTTCATGTACGATTGGAAGTACTGGATGAGATCGCG
GGCCCGCACCCGCTGTCCGCTGATCTCCTTGTAGACAAGGTTGTCCGGTG
CCAGCAGCATGGGCACCAGGGAGCGCAGGCTACTC
BO07451.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6668-PA | 1626 | atl-RA | 807..1623 | 835..19 | 4085 | 100 | Minus |
| CG6668-PB | 1626 | atl-RB | 807..1623 | 835..19 | 4085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atl-RC | 2907 | CG6668-RC | 1081..1897 | 835..19 | 4085 | 100 | Minus |
| atl-RB | 3207 | CG6668-RB | 1381..2197 | 835..19 | 4085 | 100 | Minus |
| atl-RA | 2889 | CG6668-RA | 1063..1879 | 835..19 | 4085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24632768..24633370 | 835..233 | 3015 | 100 | Minus |
| 3R | 32079331 | 3R | 24633558..24633704 | 165..19 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 24633431..24633499 | 234..166 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:35:26 has no hits.
BO07451.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:00 Download gff for
BO07451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-PA | 807..1626 | 16..835 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:19 Download gff for
BO07451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6668-PB | 807..1626 | 16..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:06:36 Download gff for
BO07451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-RA | 1063..1879 | 19..835 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:49 Download gff for
BO07451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-RA | 1063..1879 | 19..835 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:49 Download gff for
BO07451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24632768..24633370 | 233..835 | 100 | -> | Minus |
| 3R | 24633433..24633499 | 166..232 | 100 | -> | Minus |
| 3R | 24633558..24633704 | 19..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:06:36 Download gff for
BO07451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20458490..20459092 | 233..835 | 100 | -> | Minus |
| arm_3R | 20459155..20459221 | 166..232 | 100 | -> | Minus |
| arm_3R | 20459280..20459426 | 19..165 | 100 | | Minus |
BO07451.5prime Sequence
946 bp (767 high quality bases) assembled on 2006-01-06
> BO07451.5prime
GAAGTTATCAGTCGACATGGGCGGATCGGCAGTGCAGGTGATCAACGCCT
CCGAGGAGCACACATTTGTGCTCAACGAGGATGCGCTGAGTGAGGTCCTA
ATGCGGGATGAGGTCAAGGATCGGTTCGTCTGCGTTGTCTCCGTGGCTGG
AGCCTTCCGAAAGGGCAAGAGCTTCCTGCTGGACTTTTTTCTGCGCTATA
TGTATTCAAAGTATGTGCATCACGATGCGACAGACTGGCTGGGAGGCGAA
TCAGATCCGCTGGAGGGTTTCTCCTGGCGCGGCGGATCTGAGCGCGACAC
CACCGGCATTCTCATGTGGTCCGACATATTCCTGCACGACTATCCCAACG
GCGACAAGATAGCCATCATTCTGCTGGACACACAGGGCGCCTTCGACAGC
CAGAGCACGGTGCGCGATTGTGCCACCGTTTTTGCGTTGAGCACAATGCT
GTCCTCGGTGCAGATATACAACCTGTCACAGAACATCCAGGAGGACGACC
TGCAGCACCTGCAGCTCTTCACTGAGTATGGTCGCCTCGCGCTGGCCGAC
ACCGGCAAAAAGCCGTTCCAGCGTCTGCAGTTCCTCGTCCGGGACTGGAG
CTTTCCCTACGAGGCGGAATATGGTGCACTGGGCGGGGATAAGATTCTGA
AACGACGTCTGGAGGTGTCCGACAAACAGCACCCAGAACTACAGTCCCTG
CGTCGCCACATTTCGTCCTGTTTCACGGAGGTGGCCTGCTTCCTGATGCC
CCATCCAGGTCTCAATGTGGCCACCAATCCTAAATTTGACGGTCGGCTGC
AGGACATCACGCCCGAGTTTAAGAGTAGCCTGCGCTCCCTGGTGCCCATG
CTGCTGGCACCGGACAACCTTGTCTACAAGGAGATCAGCGGACAGCGGGT
GCGGGCCCGCGATCTCATCCAGTACTTCCAATCGTACATGAACATC
BO07451.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6668-PA | 1626 | atl-RA | 1..930 | 17..946 | 4650 | 100 | Plus |
| CG6668-PB | 1626 | atl-RB | 1..930 | 17..946 | 4650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atl-RC | 2907 | CG6668-RC | 275..1204 | 17..946 | 4650 | 100 | Plus |
| atl-RB | 3207 | CG6668-RB | 575..1504 | 17..946 | 4650 | 100 | Plus |
| atl-RA | 2889 | CG6668-RA | 257..1186 | 17..946 | 4650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24632155..24632891 | 210..946 | 3685 | 100 | Plus |
| 3R | 32079331 | 3R | 24631897..24632091 | 17..211 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:30:17 has no hits.
BO07451.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:01 Download gff for
BO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-PA | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:21 Download gff for
BO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6668-PB | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:03:35 Download gff for
BO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-RA | 253..1186 | 9..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:12 Download gff for
BO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-RA | 253..1186 | 9..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:12 Download gff for
BO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24631893..24632091 | 16..211 | 98 | -> | Plus |
| 3R | 24632157..24632891 | 212..946 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:03:35 Download gff for
BO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20457615..20457813 | 16..211 | 98 | -> | Plus |
| arm_3R | 20457879..20458613 | 212..946 | 100 | | Plus |
BO07451.complete Sequence
1657 bp (1657 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630789
> BO07451.complete
GAAGTTATCAGTCGACATGGGCGGATCGGCAGTGCAGGTGATCAACGCCT
CCGAGGAGCACACATTTGTGCTCAACGAGGATGCGCTGAGTGAGGTCCTA
ATGCGGGATGAGGTCAAGGATCGGTTCGTCTGCGTTGTCTCCGTGGCTGG
AGCCTTCCGAAAGGGCAAGAGCTTCCTGCTGGACTTTTTTCTGCGCTATA
TGTATTCAAAGTATGTGCATCACGATGCGACAGACTGGCTGGGAGGCGAA
TCAGATCCGCTGGAGGGTTTCTCCTGGCGCGGCGGATCTGAGCGCGACAC
CACCGGCATTCTCATGTGGTCCGACATATTCCTGCACGACTATCCCAACG
GCGACAAGATAGCCATCATTCTGCTGGACACACAGGGCGCCTTCGACAGC
CAGAGCACGGTGCGCGATTGTGCCACCGTTTTTGCGTTGAGCACAATGCT
GTCCTCGGTGCAGATATACAACCTGTCACAGAACATCCAGGAGGACGACC
TGCAGCACCTGCAGCTCTTCACTGAGTATGGTCGCCTCGCGCTGGCCGAC
ACCGGCAAAAAGCCGTTCCAGCGTCTGCAGTTCCTCGTCCGGGACTGGAG
CTTTCCCTACGAGGCGGAATATGGTGCACTGGGCGGGGATAAGATTCTGA
AACGACGTCTGGAGGTGTCCGACAAACAGCACCCAGAACTACAGTCCCTG
CGTCGCCACATTTCGTCCTGTTTCACGGAGGTGGCCTGCTTCCTGATGCC
CCATCCAGGTCTCAATGTGGCCACCAATCCTAAATTTGACGGTCGGCTGC
AGGACATCACGCCCGAGTTTAAGAGTAGCCTGCGCTCCCTGGTGCCCATG
CTGCTGGCACCGGACAACCTTGTCTACAAGGAGATCAGCGGACAGCGGGT
GCGGGCCCGCGATCTCATCCAGTACTTCCAATCGTACATGAACATCTACA
AGGGCAACGAGCTGCCCGAGCCGAAGAGCATGCTGGTGGCCACCGCAGAG
GCTAACCATTTGACTGCCGTGGCCGCCGCCAAGGAGCTGTACGGACAGCT
CATGGAGGAGGTGTGCGGTGGAACGCGGCCGTACTTAAGCACCGCCCATC
TCCAGACGGAGCACCTGCGGGTGAAGGACAAGGCACTGTTCCAGTTCGCC
GCCAAGCGCAAGATGGGTGGTGAGGAGTTCACCGAGAAATTCCGCAAGCA
ACTGGAAGATGATCTTGAGGAGGTCTTCACCAACTACCAAGCACACAACG
AGAGCAAGAACATCTTTAAGGCAGCACGGACACCGGCGGTGTACTTCGCC
TGCGCCGTCATCATGTACATCCTTAGCGGCATCTTTGGATTGGTGGGTCT
CTATACGTTCGCCAACTTCTGCAACCTGGTTATGGGTGTGGCGCTTCTAA
CGCTGGCTCTGTGGGCCTACATTAGATATAGCGGAGAGCTCAGCGACTTT
GGCGGCAAGTTGGATGACTTTGCAACGCTATTGTGGGAGAAATTCATGCG
ACCCATCTATCACGGCTGCATGGAGAAGGGCATCCACCATGTTGCCACTC
ATGCGACCGAAATGGCTGTCGGCGGAGGCGCAGCCTCCTACCGCTCCCAG
ACCTCGGTGAATGCGTCCAATGGCAAGGTGAAGCGGTCAGCAAGCTTTCT
AGACCAT
BO07451.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atl-RC | 1626 | CG6668-PC | 1..1623 | 17..1639 | 8115 | 100 | Plus |
| atl-RB | 1626 | CG6668-PB | 1..1623 | 17..1639 | 8115 | 100 | Plus |
| atl-RA | 1626 | CG6668-PA | 1..1623 | 17..1639 | 8115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atl-RC | 2907 | CG6668-RC | 275..1897 | 17..1639 | 8115 | 100 | Plus |
| atl-RB | 3207 | CG6668-RB | 575..2197 | 17..1639 | 8115 | 100 | Plus |
| atl-RA | 2889 | CG6668-RA | 257..1879 | 17..1639 | 8115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24632155..24633370 | 210..1425 | 6080 | 100 | Plus |
| 3R | 32079331 | 3R | 24631897..24632091 | 17..211 | 975 | 100 | Plus |
| 3R | 32079331 | 3R | 24633558..24633704 | 1493..1639 | 735 | 100 | Plus |
| 3R | 32079331 | 3R | 24633431..24633499 | 1424..1492 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:45:34 has no hits.
BO07451.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:33 Download gff for
BO07451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-RB | 1..1626 | 17..1642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:18 Download gff for
BO07451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-RB | 566..2192 | 9..1639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:35 Download gff for
BO07451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-RA | 257..1879 | 17..1641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:33 Download gff for
BO07451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-RB | 566..2192 | 9..1639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:09 Download gff for
BO07451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atl-RA | 257..1879 | 17..1641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:09 Download gff for
BO07451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24633558..24633704 | 1493..1641 | 98 | | Plus |
| 3R | 24631897..24632091 | 17..211 | 100 | -> | Plus |
| 3R | 24632157..24633370 | 212..1425 | 100 | -> | Plus |
| 3R | 24633433..24633499 | 1426..1492 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:35 Download gff for
BO07451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20457619..20457813 | 17..211 | 100 | -> | Plus |
| arm_3R | 20457879..20459092 | 212..1425 | 100 | -> | Plus |
| arm_3R | 20459155..20459221 | 1426..1492 | 100 | -> | Plus |
| arm_3R | 20459280..20459426 | 1493..1641 | 98 | | Plus |
BO07451.pep Sequence
Translation from 16 to 1657
> BO07451.pep
MGGSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKG
KSFLLDFFLRYMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILM
WSDIFLHDYPNGDKIAIILLDTQGAFDSQSTVRDCATVFALSTMLSSVQI
YNLSQNIQEDDLQHLQLFTEYGRLALADTGKKPFQRLQFLVRDWSFPYEA
EYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVACFLMPHPGLN
VATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDL
IQYFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVC
GGTRPYLSTAHLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDL
EEVFTNYQAHNESKNIFKAARTPAVYFACAVIMYILSGIFGLVGLYTFAN
FCNLVMGVALLTLALWAYIRYSGELSDFGGKLDDFATLLWEKFMRPIYHG
CMEKGIHHVATHATEMAVGGGAASYRSQTSVNASNGKVKRSASFLDH
BO07451.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atl-PC | 541 | CG6668-PC | 1..541 | 1..541 | 2819 | 100 | Plus |
| atl-PB | 541 | CG6668-PB | 1..541 | 1..541 | 2819 | 100 | Plus |
| atl-PA | 541 | CG6668-PA | 1..541 | 1..541 | 2819 | 100 | Plus |
