Clone Sequence Records
BO07454.3prime Sequence
996 bp (829 high quality bases) assembled on 2006-01-06
> BO07454.3prime
ATGGTCTAGAAAGCTTGCGTTCAGGTTATCCATCCAATCGGGCTCGGCGA
CACTTATCTTCTCTATAATGGAATTAACCTGATAGCATAGCGACTGGATC
TGCCTATCCCACTGAGGCAGTAGTTCCCGATTCTCGAAGTGCACAATGGC
CGAGATCTGGTCGATGTGTCCGTTCATGCGACCTTCGGTAATCATCTGAG
AGGCAATCTTCTCTGCTTTCACCGCGGGTATGTCCAGCAGAGCGCCTAGC
TCCTCAAAAGTTATGTTGTTGTACAGCTTACTAGCCGACAACAGATTGTG
CTCGAAAACAGCCCGATCCAAGATCGAGGATCCATCGGAGGTGGCAGCCT
TTTGGTGGTCCTGCAGCAGGGCCTCGAACTCCTGTAGCTCGGAGCGCCGA
ATGATGCGCTCCAAGTACATCTTTTCCAAAATTCCATAGGCCGGCAAGTG
CTGACAGCGTTCATCCTTGAACAGAGTGGCCAGCATGCGGGAACGCTGCT
GTCCGGCAGAGGCGAGGACTGTGCAGATGAGCGCTTTCTTCAGTGCCGTC
ATCCTCTCGCCTTGGTCCACGATCTTGCGGTAGGAGAGCTCGTTATATCG
CTGGGCGGCCTCGATAAACTTGCGCCTGTAATCCAGGACACGAGCATAAC
AGACTTTATATAGAACCTGCAACTCCTCGGAATTAGTTTCGGCCTGCAGC
AATGATGCCCGGTTGATGAACAGCTCCGCCTGCACCGAATCGTTGTCCTC
CAGATAGAGTCGAGCGATCTTTAAGTAGGTGCCCAACTTGCACTCCACGG
AGTACTGTTTCTGACCCGTCTCCAGAGGAAATGCCACTAGCACTGTGGCC
GCATCGCGCCACTGCTGGTTGCGCTCATAGATGTTGGCCAGGTGGAAACG
TATGCCAGCCACTTGCTCTTCGAACGAGATGACGCGCGGATTGACCTTTT
CCAGGTGAAGTGAGAAAGCATCTTGGACAGATCGTCAGGCAACTTG
BO07454.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8725-PA | 1224 | CSN4-RA | 410..1221 | 830..19 | 4060 | 100 | Minus |
| CG8725-PA | 1224 | CSN4-RA | 285..404 | 955..836 | 600 | 100 | Minus |
| CG8725-PA | 1224 | CSN4-RA | 243..285 | 996..954 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN4-RB | 1466 | CG8725-RB | 284..1262 | 996..19 | 4825 | 99.7 | Minus |
| CSN4-RA | 1703 | CG8725-RA | 521..1499 | 996..19 | 4825 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7973246..7973895 | 668..19 | 3250 | 100 | Minus |
| 2R | 25286936 | 2R | 7972858..7973190 | 996..665 | 1555 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:13:38 has no hits.
BO07454.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:06 Download gff for
BO07454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-PA | 243..1224 | 16..996 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:28 Download gff for
BO07454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8725-PA | 243..1224 | 16..996 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:14 Download gff for
BO07454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 521..1510 | 8..996 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:57 Download gff for
BO07454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 521..1510 | 8..996 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:57 Download gff for
BO07454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7972858..7973188 | 667..996 | 99 | -> | Minus |
| 2R | 7973248..7973906 | 8..666 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:14 Download gff for
BO07454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3860363..3860693 | 667..996 | 99 | -> | Minus |
| arm_2R | 3860753..3861411 | 8..666 | 99 | | Minus |
BO07454.5prime Sequence
929 bp (827 high quality bases) assembled on 2006-01-06
> BO07454.5prime
GAAGTTATCAGTCGACATGGCCGCAAACTACGGCATCTCGACGGCAGCTC
TGCGTAGCCAGCTGATGGGCCTGATCAACTTCACTGGCACGCACAAGGAC
CAGGCGGACAAGTACCGCCAGCTGCTGAAGACTGTGCTGACGAACACCGG
CCAAGAGCTGATCGATGGGCTCCGGCTCTTTGTGGAGGCCATTGTAAACG
AGCACGTCAGCCTGGTGATCTCGCGGCAGATCCTTAACGACGTGGGCAGC
GAGCTGAGCAAGTTGCCTGACGATCTGTCCAAGATGCTTTCTCACTTCAC
CCTGGAAAAGGTCAATCCGCGCGTCATCTCGTTCGAAGAGCAAGTGGCTG
GCATACGTTTCCACCTGGCCAACATCTATGAGCGCAACCAGCAGTGGCGC
GATGCGGCCACAGTGCTAGTTGGCATTCCTCTGGAGACGGGTCAGAAACA
GTACTCCGTGGAGTGCAAGTTGGGCACCTACTTAAAGATCGCTCGACTCT
ATCTGGAGGACAACGATTCGGTGCAGGCGGAGCTGTTCATCAACCGGGCA
TCATTGCTGCAGGCCGAAACTAATTCCGAGGAGTTGCAGGTTCTATATAA
AGTCTGTTATGCTCGTGTCCTGGATTACAGGCGCAAGTTTATCGAGGCCG
CCCAGCGATATAACGAGCTCTCCTACCGCAAGATCGTGGACCAAGGCGAG
AGGATGACGGCACTGAAGAAAGCGCTCATCTGCACAGTCCTCGCCTCTGC
CGGACAGCAGCGTTCCCGCATGCTGGCCACTCTGTTCAAGGATGAACGCT
GTCAGCACTTGCCGGCCTATGGAATTTTGGAAAAGATGTACTTGGAGCGC
ATCATTCGGCGCTCCGAGCTACAGGAGTTCGAGGCCCTGCTGCANGACCA
NCAAAAGGCTGCCACCTCCGATGGATCCT
BO07454.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8725-PA | 1224 | CSN4-RA | 1..913 | 17..929 | 4527 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN4-RB | 1466 | CG8725-RB | 42..954 | 17..929 | 4543 | 99.8 | Plus |
| CSN4-RA | 1703 | CG8725-RA | 279..1191 | 17..929 | 4543 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7972616..7973190 | 17..591 | 2875 | 100 | Plus |
| 2R | 25286936 | 2R | 7973246..7973587 | 588..929 | 1688 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:35:49 has no hits.
BO07454.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:07 Download gff for
BO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:29 Download gff for
BO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8725-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:06:39 Download gff for
BO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 268..1191 | 6..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:02 Download gff for
BO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 268..1191 | 6..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:02 Download gff for
BO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7972605..7973188 | 6..589 | 99 | -> | Plus |
| 2R | 7973248..7973587 | 590..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:06:39 Download gff for
BO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3860110..3860693 | 6..589 | 99 | -> | Plus |
| arm_2R | 3860753..3861092 | 590..929 | 99 | | Plus |
BO07454.complete Sequence
1255 bp (1255 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630791
> BO07454.complete
GAAGTTATCAGTCGACATGGCCGCAAACTACGGCATCTCGACGGCAGCTC
TGCGTAGCCAGCTGATGGGCCTGATCAACTTCACTGGCACGCACAAGGAC
CAGGCGGACAAGTACCGCCAGCTGCTGAAGACTGTGCTGACGAACACCGG
CCAAGAGCTGATCGATGGGCTCCGGCTCTTTGTGGAGGCCATTGTAAACG
AGCACGTCAGCCTGGTGATCTCGCGGCAGATCCTTAACGACGTGGGCAGC
GAGCTGAGCAAGTTGCCTGACGATCTGTCCAAGATGCTTTCTCACTTCAC
CCTGGAAAAGGTCAATCCGCGCGTCATCTCGTTCGAAGAGCAAGTGGCTG
GCATACGTTTCCACCTGGCCAACATCTATGAGCGCAACCAGCAGTGGCGC
GATGCGGCCACAGTGCTAGTTGGCATTCCTCTGGAGACGGGTCAGAAACA
GTACTCCGTGGAGTGCAAGTTGGGCACCTACTTAAAGATCGCTCGACTCT
ATCTGGAGGACAACGATTCGGTGCAGGCGGAGCTGTTCATCAACCGGGCA
TCATTGCTGCAGGCCGAAACTAATTCCGAGGAGTTGCAGGTTCTATATAA
AGTCTGTTATGCTCGTGTCCTGGATTACAGGCGCAAGTTTATCGAGGCCG
CCCAGCGATATAACGAGCTCTCCTACCGCAAGATCGTGGACCAAGGCGAG
AGGATGACGGCACTGAAGAAAGCGCTCATCTGCACAGTCCTCGCCTCTGC
CGGACAGCAGCGTTCCCGCATGCTGGCCACTCTGTTCAAGGATGAACGCT
GTCAGCACTTGCCGGCCTATGGAATTTTGGAAAAGATGTACTTGGAGCGC
ATCATTCGGCGCTCCGAGCTACAGGAGTTCGAGGCCCTGCTGCAGGACCA
CCAAAAGGCTGCCACCTCCGATGGATCCTCGATCTTGGATCGGGCTGTTT
TCGAGCACAATCTGTTGTCGGCTAGTAAGCTGTACAACAACATAACTTTT
GAGGAGCTAGGCGCTCTGCTGGACATACCCGCGGTGAAAGCAGAGAAGAT
TGCCTCTCAGATGATTACCGAAGGTCGCATGAACGGACACATCGACCAGA
TCTCGGCCATTGTGCACTTCGAGAATCGGGAACTACTGCCTCAGTGGGAT
AGGCAGATCCAGTCGCTATGCTATCAGGTTAATTCCATTATAGAGAAGAT
AAGTGTCGCCGAGCCCGATTGGATGGATAACCTGAACGCAAGCTTTCTAG
ACCAT
BO07454.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN4-RB | 1224 | CG8725-PB | 1..1221 | 17..1237 | 6105 | 100 | Plus |
| CSN4-RA | 1224 | CG8725-PA | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN4-RB | 1466 | CG8725-RB | 42..1262 | 17..1237 | 6105 | 100 | Plus |
| CSN4-RA | 1703 | CG8725-RA | 279..1499 | 17..1237 | 6105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7973246..7973895 | 588..1237 | 3250 | 100 | Plus |
| 2R | 25286936 | 2R | 7972616..7973190 | 17..591 | 2875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:04:03 has no hits.
BO07454.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:17 Download gff for
BO07454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 1..1224 | 17..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:00 Download gff for
BO07454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 268..1510 | 6..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:43 Download gff for
BO07454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 279..1499 | 17..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:17 Download gff for
BO07454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 268..1510 | 6..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:58 Download gff for
BO07454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 279..1499 | 17..1239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:58 Download gff for
BO07454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7972616..7973188 | 17..589 | 100 | -> | Plus |
| 2R | 7973248..7973895 | 590..1239 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:43 Download gff for
BO07454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3860121..3860693 | 17..589 | 100 | -> | Plus |
| arm_2R | 3860753..3861400 | 590..1239 | 99 | | Plus |
BO07454.pep Sequence
Translation from 16 to 1255
> BO07454.pep
MAANYGISTAALRSQLMGLINFTGTHKDQADKYRQLLKTVLTNTGQELID
GLRLFVEAIVNEHVSLVISRQILNDVGSELSKLPDDLSKMLSHFTLEKVN
PRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQYSVEC
KLGTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYAR
VLDYRRKFIEAAQRYNELSYRKIVDQGERMTALKKALICTVLASAGQQRS
RMLATLFKDERCQHLPAYGILEKMYLERIIRRSELQEFEALLQDHQKAAT
SDGSSILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMI
TEGRMNGHIDQISAIVHFENRELLPQWDRQIQSLCYQVNSIIEKISVAEP
DWMDNLNASFLDH
BO07454.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN4-PB | 407 | CG8725-PB | 1..407 | 1..407 | 2047 | 100 | Plus |
| CSN4-PA | 407 | CG8725-PA | 1..407 | 1..407 | 2047 | 100 | Plus |
