Clone Sequence Records
BO07457.3prime Sequence
808 bp (798 high quality bases) assembled on 2006-01-06
> BO07457.3prime
ATGGTCTAGAAAGCTTGCGTCACTCAGCATGACTTCCAAGTTCTTTTGCT
TCTGCCAAAAGCGGTACTCGATGAGGCCATATCCCACGCAACCCACTAAA
ATAAAAATAATCAAAATCACCAATTTCGTGGAGGTGCAAAGCTGCGAACT
GATGACGTAGCCGATAACAGAACCAGTGCTTTCCCACAGGCGGAAGTTGC
TATAAGCGGCAATCAGATGGTTCGGAAACAGAATGCCATAAAAAGCATTG
ACCACAACCAGCCAGACTCCATCGCAGATGCCCCAAACCGCCGCAAAGGT
GCAGTAGCTCATATAGTCGCCCTCTCGCGCTTCCCAGGTGTACATGTAGG
TGAGCAGACAGAGGTTGACCACGGCACATAGTGCGGCCAGAGTGACCCGT
CCAATGCGCTCCACCAGCGCGCCTGCGATCCCGGCAGCCACCGCATTCGC
CACGCCAAAGCATATCATTGCGAACCCGATTCTAGAGATCCCCCATCCGC
AGGCCACAAACGAACGGGTGAAGTCCACGGCCAGGAAGGCCTCCTCCAGC
CCGATGAACATCGTGATGGGCAGCATCAGGATTTGGCGACGTTTGCGCAG
AAGATTTATGGTCACCGTGAGGAGCTTTAGCCCCGACATCCCGTCGCCAG
TGTCTCCGCGCTTTACTCCATAGCGTTTGAGGGAGCTCACGCCGAAGATC
ATCATGACCACCGCCGCTGCCATGCAGGTGAGGAAGATGGAGTTGAGCAG
CTGGATCTGCTCCGGAGCTGGGGGCACTAGGTTTGGATTGGCCTCTGCTC
CCACTCCG
BO07457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2121-PA | 1569 | CG2121-RA | 777..1566 | 808..19 | 3950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2121-RB | 1973 | CG2121-RB | 1004..1793 | 808..19 | 3950 | 100 | Minus |
| CG2121-RA | 1910 | CG2121-RA | 941..1730 | 808..19 | 3950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8396928..8397356 | 246..674 | 2145 | 100 | Plus |
| 2R | 25286936 | 2R | 8396703..8396866 | 83..246 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 8397614..8397748 | 674..808 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 8396577..8396641 | 19..83 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:50:37 has no hits.
BO07457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:10 Download gff for
BO07457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-PA | 777..1569 | 16..808 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:33 Download gff for
BO07457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-PA | 777..1569 | 16..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:22:16 Download gff for
BO07457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-RA | 941..1739 | 12..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:21:16 Download gff for
BO07457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-RA | 941..1739 | 12..808 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:21:16 Download gff for
BO07457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8396703..8396865 | 83..245 | 100 | <- | Plus |
| 2R | 8396568..8396640 | 12..82 | 94 | <- | Plus |
| 2R | 8396928..8397355 | 246..673 | 100 | <- | Plus |
| 2R | 8397614..8397748 | 674..808 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:22:16 Download gff for
BO07457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4284073..4284145 | 12..82 | 94 | <- | Plus |
| arm_2R | 4285119..4285253 | 674..808 | 100 | | Plus |
| arm_2R | 4284208..4284370 | 83..245 | 100 | <- | Plus |
| arm_2R | 4284433..4284860 | 246..673 | 100 | <- | Plus |
BO07457.5prime Sequence
930 bp (795 high quality bases) assembled on 2006-01-06
> BO07457.5prime
GAAGTTATCAGTCGACATGGTTTACCCCAGTGACACGTCGGACGCCAACA
ACGAGGAGCTGGCGCTGGAGCACAGTGTTGCACATGGCAATGTCCACGGT
AACGGCACTGGCACTGGTGGTAGCTCACCCGGGACAACAACTGCTCCGAA
CGGGGACAACAAAGTCAATCAGCGCCATTACGAGCCGGCCGAGCGCTTCA
TCATCACCAAGAACGTGGTCGTGATAGGCCTGGCTTTCATGATTCACTTC
ACGGCCTTCCACGGCACATCGAATCTGCAGAGCTCGGTGAACGCGGATAA
GGCCCTGGGCACCACCACGCTTGCCGTCATCTACGGCTCGCTGATACTGT
CCAACATCTTCCTGCCGATGACCGTGATAAGATGGTTCGGTTGCCGGTTG
ACCATGGCGCTGGCCCTCTTCGCCTACATGCCCTACATAGCCGCCCAGTT
TTACCCACGGTTCGAGACCCTAATCCCGGCGGCCCTGATGGTGGGTTTCG
GTGGCGGGCCATTGTGGTGCTCCAAGTGCACCTACCTATCCACCGTCTCC
GAGGCACTTACCCAGGTGCGGGGCAACAAGTCGCGTAAGGATGTGAACAC
CGTCAAGTTCTTCGGCCTGTTCTTCATCTTCTACCAGATGGCCCAGGTGT
GGGGCAACCTCATATCCTCCTCGGTTCTAACCCTGAGTGCCCCTGCTGCC
CAATCCGCGGCAAATGATTCTTTCGAGCTGGAGGTGCAGCGGGAACTGGA
GAGAAACAGGGTGGCCGAACTCTGCGGGGCCCGTTTCTGTCCCGGAGTGG
GAGCAGAGGCCAATCTCAACCTAGTGCCCCCAGCTCCGGAGCAGATCCAG
CTGCTCAACTCCATCTTCCTCACCTGCATGGCAGCGGCGGTGGTCATGAT
GATCTTCGGCGTGAGCTCCCTCAAACGCTA
BO07457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2121-PA | 1569 | CG2121-RA | 1..914 | 17..930 | 4520 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2121-RB | 1973 | CG2121-RB | 225..1141 | 14..930 | 4555 | 99.8 | Plus |
| CG2121-RA | 1910 | CG2121-RA | 162..1078 | 14..930 | 4555 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8397614..8398161 | 927..380 | 2710 | 99.6 | Minus |
| 2R | 25286936 | 2R | 8403891..8404258 | 381..14 | 1840 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:47:30 has no hits.
BO07457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:11 Download gff for
BO07457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:35 Download gff for
BO07457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:39 Download gff for
BO07457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-RA | 162..1077 | 14..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:19:43 Download gff for
BO07457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-RA | 162..1077 | 14..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:19:43 Download gff for
BO07457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8397612..8398159 | 382..929 | 99 | <- | Minus |
| 2R | 8403891..8404258 | 14..381 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:39 Download gff for
BO07457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4285117..4285664 | 382..929 | 99 | <- | Minus |
| arm_2R | 4291396..4291763 | 14..381 | 100 | | Minus |
BO07457.complete Sequence
1600 bp (1600 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630793
> BO07457.complete
GAAGTTATCAGTCGACATGGTTTACCCCAGTGACACGTCGGACGCCAACA
ACGAGGAGCTGGCGCTGGAGCACAGTGTTGCACATGGCAATGTCCACGGT
AACGGCACTGGCACTGGTGGTAGCTCACCCGGGACAACAACTGCTCCGAA
CGGGGACAACAAAGTCAATCAGCGCCATTACGAGCCGGCCGAGCGCTTCA
TCATCACCAAGAACGTGGTCGTGATAGGCCTGGCTTTCATGATTCACTTC
ACGGCCTTCCACGGCACATCGAATCTGCAGAGCTCGGTGAACGCGGATAA
GGCCCTGGGCACCACCACGCTTGCCGTCATCTACGGCTCGCTGATACTGT
CCAACATCTTCCTGCCGATGACCGTGATAAGATGGTTCGGTTGCCGGTTG
ACCATGGCGCTGGCCCTCTTCGCCTACATGCCCTACATAGCCGCCCAGTT
TTACCCACGGTTCGAGACCCTAATCCCGGCGGCCCTGATGGTGGGTTTCG
GTGGCGGGCCATTGTGGTGCTCCAAGTGCACCTACCTATCCACCGTCTCC
GAGGCACTTACCCAGGTGCGGGGCAACAAGTCGCGTAAGGATGTGAACAC
CGTCAAGTTCTTCGGCCTGTTCTTCATCTTCTACCAGATGGCCCAGGTGT
GGGGCAACCTCATATCCTCCTCGGTTCTAACCCTGAGTGCCCCTGCTGCC
CAATCCGCGGCAAATGATTCTTTCGAGCTGGAGGTGCAGCGGGAACTGGA
GAGAAACAGGGTGGCCGAACTCTGCGGGGCCCGTTTCTGTCCCGGAGTGG
GAGCAGAGGCCAATCCAAACCTAGTGCCCCCAGCTCCGGAGCAGATCCAG
CTGCTCAACTCCATCTTCCTCACCTGCATGGCAGCGGCGGTGGTCATGAT
GATCTTCGGCGTGAGCTCCCTCAAACGCTATGGAGTAAAGCGCGGAGACA
CTGGCGACGGGATGTCGGGGCTAAAGCTCCTCACGGTGACCATAAATCTT
CTGCGCAAACGTCGCCAAATCCTGATGCTGCCCATCACGATGTTCATCGG
GCTGGAGGAGGCCTTCCTGGCCGTGGACTTCACCCGTTCGTTTGTGGCCT
GCGGATGGGGGATCTCTAGAATCGGGTTCGCAATGATATGCTTTGGCGTG
GCGAATGCGGTGGCTGCCGGGATCGCAGGCGCGCTGGTGGAGCGCATTGG
ACGGGTCACTCTGGCCGCACTATGTGCCGTGGTCAACCTCTGTCTGCTCA
CCTACATGTACACCTGGGAAGCGCGAGAGGGCGACTATATGAGCTACTGC
ACCTTTGCGGCGGTTTGGGGCATCTGCGATGGAGTCTGGCTGGTTGTGGT
CAATGCTTTTTATGGCATTCTGTTTCCGAACCATCTGATTGCCGCTTATA
GCAACTTCCGCCTGTGGGAAAGCACTGGTTCTGTTATCGGCTACGTCATC
AGTTCGCAGCTTTGCACCTCCACGAAATTGGTGATTTTGATTATTTTTAT
TTTAGTGGGTTGCGTGGGATATGGCCTCATCGAGTACCGCTTTTGGCAGA
AGCAAAAGAACTTGGAAGTCATGCTGAGTGACGCAAGCTTTCTAGACCAT
BO07457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2121-RB | 1611 | CG2121-PB | 40..1608 | 14..1582 | 7845 | 100 | Plus |
| CG2121-RA | 1569 | CG2121-PA | 1..1566 | 17..1582 | 7830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2121-RB | 1973 | CG2121-RB | 225..1793 | 14..1582 | 7845 | 100 | Plus |
| CG2121-RA | 1910 | CG2121-RA | 162..1730 | 14..1582 | 7845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8397614..8398161 | 927..380 | 2740 | 100 | Minus |
| 2R | 25286936 | 2R | 8396928..8397356 | 1355..927 | 2145 | 100 | Minus |
| 2R | 25286936 | 2R | 8403891..8404258 | 381..14 | 1840 | 100 | Minus |
| 2R | 25286936 | 2R | 8396703..8396866 | 1518..1355 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 8396577..8396641 | 1582..1518 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:32:57 has no hits.
BO07457.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:02 Download gff for
BO07457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-RB | 40..1611 | 14..1585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:01 Download gff for
BO07457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-RB | 181..1758 | 14..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:54 Download gff for
BO07457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-RA | 165..1730 | 17..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:02 Download gff for
BO07457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-RB | 181..1758 | 14..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:34 Download gff for
BO07457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-RA | 165..1730 | 17..1584 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:34 Download gff for
BO07457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8396574..8396640 | 1519..1584 | 97 | <- | Minus |
| 2R | 8396703..8396865 | 1356..1518 | 100 | <- | Minus |
| 2R | 8396928..8397355 | 928..1355 | 100 | <- | Minus |
| 2R | 8397614..8398159 | 382..927 | 100 | <- | Minus |
| 2R | 8403891..8404255 | 17..381 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:54 Download gff for
BO07457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4284079..4284145 | 1519..1584 | 97 | <- | Minus |
| arm_2R | 4284208..4284370 | 1356..1518 | 100 | <- | Minus |
| arm_2R | 4284433..4284860 | 928..1355 | 100 | <- | Minus |
| arm_2R | 4285119..4285664 | 382..927 | 100 | <- | Minus |
| arm_2R | 4291396..4291760 | 17..381 | 100 | | Minus |
BO07457.pep Sequence
Translation from 16 to 1600
> BO07457.pep
MVYPSDTSDANNEELALEHSVAHGNVHGNGTGTGGSSPGTTTAPNGDNKV
NQRHYEPAERFIITKNVVVIGLAFMIHFTAFHGTSNLQSSVNADKALGTT
TLAVIYGSLILSNIFLPMTVIRWFGCRLTMALALFAYMPYIAAQFYPRFE
TLIPAALMVGFGGGPLWCSKCTYLSTVSEALTQVRGNKSRKDVNTVKFFG
LFFIFYQMAQVWGNLISSSVLTLSAPAAQSAANDSFELEVQRELERNRVA
ELCGARFCPGVGAEANPNLVPPAPEQIQLLNSIFLTCMAAAVVMMIFGVS
SLKRYGVKRGDTGDGMSGLKLLTVTINLLRKRRQILMLPITMFIGLEEAF
LAVDFTRSFVACGWGISRIGFAMICFGVANAVAAGIAGALVERIGRVTLA
ALCAVVNLCLLTYMYTWEAREGDYMSYCTFAAVWGICDGVWLVVVNAFYG
ILFPNHLIAAYSNFRLWESTGSVIGYVISSQLCTSTKLVILIIFILVGCV
GYGLIEYRFWQKQKNLEVMLSDASFLDH
BO07457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2121-PB | 536 | CG2121-PB | 15..536 | 1..522 | 2707 | 100 | Plus |
| CG2121-PA | 522 | CG2121-PA | 1..522 | 1..522 | 2707 | 100 | Plus |
| CG4928-PB | 538 | CG4928-PB | 36..486 | 57..517 | 983 | 41.3 | Plus |
| CG4928-PA | 538 | CG4928-PA | 36..486 | 57..517 | 983 | 41.3 | Plus |
| CG4928-PC | 495 | CG4928-PC | 36..481 | 57..512 | 971 | 41.3 | Plus |
