Clone Sequence Records
BO07458.3prime Sequence
842 bp (841 high quality bases) assembled on 2006-01-06
> BO07458.3prime
ATGGTCTAGAAAGCTTGCGTGGCCCCCGATCTCGCGCAGCTCACGCTTGC
CCAGCGGCAGCGGAGGACGGAAGTTGTTGATGACCTTGCCGTTGAACTCG
TTGCAGGGGCACTCCTCCTTCACGTCGTAGGCATTGAGATTGCGCATGGC
GTTCAGCTGGTCGTCGGACACTTCGATGGGCGTCTTGAACACGATCCAGA
TGACCGACTCCGAGCACGGTGGAGTGGTCAGGGAACCCTCATAGGTCCAA
TAGGTGTGCACATCGGGCAGCAGCTGGCCGGGATCACAGCCCTGGGGGAG
GGTGACGCGATCGCCCTTGTGCAGCACGAACTGCAGCAGGCTGGTCACCT
TGTCCAGTTCGGCATGGTGATTGCCAGCCTTAAGGAACACACCCAGCACG
GCCAGGCCGTCGGGAGCGGCAGCCGCCTCGCCAAACGACTTGTACTTCGT
GGTGTTCCAGTGAACCAAATGCAGCTCGCCGGAATAGGACACGCCGTCGA
CGGTGTGCTCCGATCCCTTGGAGTCCGTGCAGCCCCAGTGGCAGTGGAAC
TGCTCCAGCTTAAAGATCTGATCGCCCAGCGGTCCTCCAGTCAGCTCGGA
GTCGGCGCCGTTCACATCCACGCGCCAGCAATAGCCAGGATTGACCAGGC
TTTTGGTGTGCTCCGGCACATACTTCCACTTGAGCGGAGCTACATTCAGT
TCGCTGCCCTTCTTGGCGCTGGAGGGTGTGATATCCACGGGCGACTGACG
ATGTCCCGACGCCTGTGGGTACTCCTTGGCCCAGTGGGCAGGTCCGTTCT
CTTCGGTGTATCCCCAGTGGTGGCTCATGTCGACTGATAACT
BO07458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7820-PA | 813 | CAH1-RA | 1..810 | 828..19 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH1-RA | 1456 | CG7820-RA | 304..1113 | 828..19 | 4050 | 100 | Minus |
adat-RA | 3003 | CG16889-RA | 1767..2555 | 19..795 | 3745 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13809034..13809651 | 636..19 | 3090 | 100 | Minus |
2L | 23513712 | 2L | 13808808..13808968 | 795..635 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:27:49 has no hits.
BO07458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:12 Download gff for
BO07458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-PA | 1..813 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:36 Download gff for
BO07458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7820-PA | 1..813 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:25:45 Download gff for
BO07458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 296..1117 | 14..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:41 Download gff for
BO07458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 296..1117 | 14..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:41 Download gff for
BO07458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13803921..13803962 | 795..835 | 92 | -> | Minus |
2L | 13808809..13808967 | 636..794 | 100 | -> | Minus |
2L | 13809035..13809654 | 14..635 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:25:45 Download gff for
BO07458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13803921..13803962 | 795..835 | 92 | -> | Minus |
arm_2L | 13808809..13808967 | 636..794 | 100 | -> | Minus |
arm_2L | 13809035..13809654 | 14..635 | 99 | -> | Minus |
BO07458.5prime Sequence
842 bp (738 high quality bases) assembled on 2006-01-06
> BO07458.5prime
GAAGTTATCAGTCGACATGAGCCACCACTGGGGATACACCGAAGAGAACG
GACCTGCCCACTGGGCCAAGGAGTACCCACAGGCGTCGGGACATCGTCAG
TCGCCCGTGGATATCACACCCTCCAGCGCCAAGAAGGGCAGCGAACTGAA
TGTAGCTCCGCTCAAGTGGAAGTATGTGCCGGAGCACACCAAAAGCCTGG
TCAATCCTGGCTATTGCTGGCGCGTGGATGTGAACGGCGCCGACTCCGAG
CTGACTGGAGGACCGCTGGGCGATCAGATCTTTAAGCTGGAGCAGTTCCA
CTGCCACTGGGGCTGCACGGACTCCAAGGGATCGGAGCACACCGTCGACG
GCGTGTCCTATTCCGGCGAGCTGCATTTGGTTCACTGGAACACCACGAAG
TACAAGTCGTTTGGCGAGGCGGCTGCCGCTCCCGACGGCCTGGCCGTGCT
GGGTGTGTTCCTTAAGGCTGGCAATCACCATGCCGAACTGGACAAGGTGA
CCAGCCTGCTGCAGTTCGTGCTGCACAAGGGCGATCGCGTCACCCTCCCC
CAGGGCTGTGATCCCGGCCAGCTGCTGCCCGATGTGCACACCTATTGGAC
CTATGAGGGTTCCCTGACCACTCCACCGTGCTCGGAGTCGGTCATCTGGA
TCGTGTTCAAGACGCCCATCGAAGTGTCCGACGACCAGCTGAACGCCATG
CGCAATCTCAATGCCTACGACGTGAAGGAGGAGTGCCCCTGNCACGAGTT
CAACGGCAAGGTCATCAACAACTTCCGTCCTCCGCTGCCGCTGGGCAAGC
GTGAGCTGCGCGAGATCGGGGGCCACGCAAGCTTTCTAGACC
BO07458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7820-PA | 813 | CAH1-RA | 1..810 | 17..826 | 4006 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:56:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH1-RA | 1456 | CG7820-RA | 304..1113 | 17..826 | 4024 | 99.8 | Plus |
adat-RA | 3003 | CG16889-RA | 1767..2555 | 826..50 | 3719 | 98.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:56:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13809034..13809651 | 209..826 | 3064 | 99.7 | Plus |
2L | 23513712 | 2L | 13808808..13808968 | 50..210 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:56:41 has no hits.
BO07458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:13 Download gff for
BO07458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-PA | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:38 Download gff for
BO07458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7820-PA | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:05:31 Download gff for
BO07458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 296..1117 | 10..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:54 Download gff for
BO07458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 296..1117 | 10..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:54 Download gff for
BO07458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13803921..13803962 | 10..50 | 92 | -> | Plus |
2L | 13808809..13808967 | 51..209 | 100 | -> | Plus |
2L | 13809035..13809654 | 210..831 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:05:31 Download gff for
BO07458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13803921..13803962 | 10..50 | 92 | -> | Plus |
arm_2L | 13808809..13808967 | 51..209 | 100 | -> | Plus |
arm_2L | 13809035..13809654 | 210..831 | 99 | -> | Plus |
BO07458.complete Sequence
844 bp (844 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630794
> BO07458.complete
GAAGTTATCAGTCGACATGAGCCACCACTGGGGATACACCGAAGAGAACG
GACCTGCCCACTGGGCCAAGGAGTACCCACAGGCGTCGGGACATCGTCAG
TCGCCCGTGGATATCACACCCTCCAGCGCCAAGAAGGGCAGCGAACTGAA
TGTAGCTCCGCTCAAGTGGAAGTATGTGCCGGAGCACACCAAAAGCCTGG
TCAATCCTGGCTATTGCTGGCGCGTGGATGTGAACGGCGCCGACTCCGAG
CTGACTGGAGGACCGCTGGGCGATCAGATCTTTAAGCTGGAGCAGTTCCA
CTGCCACTGGGGCTGCACGGACTCCAAGGGATCGGAGCACACCGTCGACG
GCGTGTCCTATTCCGGCGAGCTGCATTTGGTTCACTGGAACACCACGAAG
TACAAGTCGTTTGGCGAGGCGGCTGCCGCTCCCGACGGCCTGGCCGTGCT
GGGTGTGTTCCTTAAGGCTGGCAATCACCATGCCGAACTGGACAAGGTGA
CCAGCCTGCTGCAGTTCGTGCTGCACAAGGGCGATCGCGTCACCCTCCCC
CAGGGCTGTGATCCCGGCCAGCTGCTGCCCGATGTGCACACCTATTGGAC
CTATGAGGGTTCCCTGACCACTCCACCGTGCTCGGAGTCGGTCATCTGGA
TCGTGTTCAAGACGCCCATCGAAGTGTCCGACGACCAGCTGAACGCCATG
CGCAATCTCAATGCCTACGACGTGAAGGAGGAGTGCCCCTGCAACGAGTT
CAACGGCAAGGTCATCAACAACTTCCGTCCTCCGCTGCCGCTGGGCAAGC
GTGAGCTGCGCGAGATCGGGGGCCACGCAAGCTTTCTAGACCAT
BO07458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH1-RA | 813 | CG7820-PA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH1-RA | 1456 | CG7820-RA | 304..1113 | 17..826 | 4050 | 100 | Plus |
adat-RA | 3003 | CG16889-RA | 1767..2555 | 826..50 | 3715 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13809034..13809651 | 209..826 | 3090 | 100 | Plus |
2L | 23513712 | 2L | 13808808..13808968 | 50..210 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:01:53 has no hits.
BO07458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:51 Download gff for
BO07458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:02 Download gff for
BO07458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 295..1116 | 10..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:55 Download gff for
BO07458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 304..1113 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:53 Download gff for
BO07458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 295..1116 | 10..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:06 Download gff for
BO07458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH1-RA | 304..1113 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:06 Download gff for
BO07458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13803929..13803962 | 17..50 | 100 | -> | Plus |
2L | 13808809..13808967 | 51..209 | 100 | -> | Plus |
2L | 13809035..13809651 | 210..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:55 Download gff for
BO07458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13808809..13808967 | 51..209 | 100 | -> | Plus |
arm_2L | 13803929..13803962 | 17..50 | 100 | -> | Plus |
arm_2L | 13809035..13809651 | 210..828 | 99 | | Plus |
BO07458.pep Sequence
Translation from 16 to 844
> BO07458.pep
MSHHWGYTEENGPAHWAKEYPQASGHRQSPVDITPSSAKKGSELNVAPLK
WKYVPEHTKSLVNPGYCWRVDVNGADSELTGGPLGDQIFKLEQFHCHWGC
TDSKGSEHTVDGVSYSGELHLVHWNTTKYKSFGEAAAAPDGLAVLGVFLK
AGNHHAELDKVTSLLQFVLHKGDRVTLPQGCDPGQLLPDVHTYWTYEGSL
TTPPCSESVIWIVFKTPIEVSDDQLNAMRNLNAYDVKEECPCNEFNGKVI
NNFRPPLPLGKRELREIGGHASFLDH
BO07458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH1-PA | 270 | CG7820-PA | 1..270 | 1..270 | 1503 | 100 | Plus |
CAH2-PA | 335 | CG6906-PA | 24..282 | 1..264 | 387 | 34.9 | Plus |
CG6074-PA | 311 | CG6074-PA | 22..289 | 2..270 | 341 | 32.7 | Plus |
CG11284-PE | 250 | CG11284-PE | 4..227 | 28..254 | 317 | 34.5 | Plus |
CG11284-PD | 250 | CG11284-PD | 4..227 | 28..254 | 317 | 34.5 | Plus |