Clone BO07458 Report

Search the DGRC for BO07458

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCAH1-RA
Protein status:BO07458.pep: validated full length
Sequenced Size:844

Clone Sequence Records

BO07458.3prime Sequence

842 bp (841 high quality bases) assembled on 2006-01-06

> BO07458.3prime
ATGGTCTAGAAAGCTTGCGTGGCCCCCGATCTCGCGCAGCTCACGCTTGC
CCAGCGGCAGCGGAGGACGGAAGTTGTTGATGACCTTGCCGTTGAACTCG
TTGCAGGGGCACTCCTCCTTCACGTCGTAGGCATTGAGATTGCGCATGGC
GTTCAGCTGGTCGTCGGACACTTCGATGGGCGTCTTGAACACGATCCAGA
TGACCGACTCCGAGCACGGTGGAGTGGTCAGGGAACCCTCATAGGTCCAA
TAGGTGTGCACATCGGGCAGCAGCTGGCCGGGATCACAGCCCTGGGGGAG
GGTGACGCGATCGCCCTTGTGCAGCACGAACTGCAGCAGGCTGGTCACCT
TGTCCAGTTCGGCATGGTGATTGCCAGCCTTAAGGAACACACCCAGCACG
GCCAGGCCGTCGGGAGCGGCAGCCGCCTCGCCAAACGACTTGTACTTCGT
GGTGTTCCAGTGAACCAAATGCAGCTCGCCGGAATAGGACACGCCGTCGA
CGGTGTGCTCCGATCCCTTGGAGTCCGTGCAGCCCCAGTGGCAGTGGAAC
TGCTCCAGCTTAAAGATCTGATCGCCCAGCGGTCCTCCAGTCAGCTCGGA
GTCGGCGCCGTTCACATCCACGCGCCAGCAATAGCCAGGATTGACCAGGC
TTTTGGTGTGCTCCGGCACATACTTCCACTTGAGCGGAGCTACATTCAGT
TCGCTGCCCTTCTTGGCGCTGGAGGGTGTGATATCCACGGGCGACTGACG
ATGTCCCGACGCCTGTGGGTACTCCTTGGCCCAGTGGGCAGGTCCGTTCT
CTTCGGTGTATCCCCAGTGGTGGCTCATGTCGACTGATAACT

BO07458.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7820-PA 813 CAH1-RA 1..810 828..19 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
CAH1-RA 1456 CG7820-RA 304..1113 828..19 4050 100 Minus
adat-RA 3003 CG16889-RA 1767..2555 19..795 3745 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13809034..13809651 636..19 3090 100 Minus
2L 23513712 2L 13808808..13808968 795..635 805 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:27:49 has no hits.

BO07458.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:12 Download gff for BO07458.3prime
Subject Subject Range Query Range Percent Splice Strand
CAH1-PA 1..813 15..828 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:36 Download gff for BO07458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7820-PA 1..813 15..828 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:25:45 Download gff for BO07458.3prime
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 296..1117 14..835 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:41 Download gff for BO07458.3prime
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 296..1117 14..835 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:41 Download gff for BO07458.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13803921..13803962 795..835 92 -> Minus
2L 13808809..13808967 636..794 100 -> Minus
2L 13809035..13809654 14..635 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:25:45 Download gff for BO07458.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13803921..13803962 795..835 92 -> Minus
arm_2L 13808809..13808967 636..794 100 -> Minus
arm_2L 13809035..13809654 14..635 99 -> Minus

BO07458.5prime Sequence

842 bp (738 high quality bases) assembled on 2006-01-06

> BO07458.5prime
GAAGTTATCAGTCGACATGAGCCACCACTGGGGATACACCGAAGAGAACG
GACCTGCCCACTGGGCCAAGGAGTACCCACAGGCGTCGGGACATCGTCAG
TCGCCCGTGGATATCACACCCTCCAGCGCCAAGAAGGGCAGCGAACTGAA
TGTAGCTCCGCTCAAGTGGAAGTATGTGCCGGAGCACACCAAAAGCCTGG
TCAATCCTGGCTATTGCTGGCGCGTGGATGTGAACGGCGCCGACTCCGAG
CTGACTGGAGGACCGCTGGGCGATCAGATCTTTAAGCTGGAGCAGTTCCA
CTGCCACTGGGGCTGCACGGACTCCAAGGGATCGGAGCACACCGTCGACG
GCGTGTCCTATTCCGGCGAGCTGCATTTGGTTCACTGGAACACCACGAAG
TACAAGTCGTTTGGCGAGGCGGCTGCCGCTCCCGACGGCCTGGCCGTGCT
GGGTGTGTTCCTTAAGGCTGGCAATCACCATGCCGAACTGGACAAGGTGA
CCAGCCTGCTGCAGTTCGTGCTGCACAAGGGCGATCGCGTCACCCTCCCC
CAGGGCTGTGATCCCGGCCAGCTGCTGCCCGATGTGCACACCTATTGGAC
CTATGAGGGTTCCCTGACCACTCCACCGTGCTCGGAGTCGGTCATCTGGA
TCGTGTTCAAGACGCCCATCGAAGTGTCCGACGACCAGCTGAACGCCATG
CGCAATCTCAATGCCTACGACGTGAAGGAGGAGTGCCCCTGNCACGAGTT
CAACGGCAAGGTCATCAACAACTTCCGTCCTCCGCTGCCGCTGGGCAAGC
GTGAGCTGCGCGAGATCGGGGGCCACGCAAGCTTTCTAGACC

BO07458.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7820-PA 813 CAH1-RA 1..810 17..826 4006 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
CAH1-RA 1456 CG7820-RA 304..1113 17..826 4024 99.8 Plus
adat-RA 3003 CG16889-RA 1767..2555 826..50 3719 98.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13809034..13809651 209..826 3064 99.7 Plus
2L 23513712 2L 13808808..13808968 50..210 805 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:56:41 has no hits.

BO07458.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:13 Download gff for BO07458.5prime
Subject Subject Range Query Range Percent Splice Strand
CAH1-PA 1..813 17..830 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:38 Download gff for BO07458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7820-PA 1..813 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:05:31 Download gff for BO07458.5prime
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 296..1117 10..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:54 Download gff for BO07458.5prime
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 296..1117 10..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:54 Download gff for BO07458.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13803921..13803962 10..50 92 -> Plus
2L 13808809..13808967 51..209 100 -> Plus
2L 13809035..13809654 210..831 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:05:31 Download gff for BO07458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13803921..13803962 10..50 92 -> Plus
arm_2L 13808809..13808967 51..209 100 -> Plus
arm_2L 13809035..13809654 210..831 99 -> Plus

BO07458.complete Sequence

844 bp (844 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630794

> BO07458.complete
GAAGTTATCAGTCGACATGAGCCACCACTGGGGATACACCGAAGAGAACG
GACCTGCCCACTGGGCCAAGGAGTACCCACAGGCGTCGGGACATCGTCAG
TCGCCCGTGGATATCACACCCTCCAGCGCCAAGAAGGGCAGCGAACTGAA
TGTAGCTCCGCTCAAGTGGAAGTATGTGCCGGAGCACACCAAAAGCCTGG
TCAATCCTGGCTATTGCTGGCGCGTGGATGTGAACGGCGCCGACTCCGAG
CTGACTGGAGGACCGCTGGGCGATCAGATCTTTAAGCTGGAGCAGTTCCA
CTGCCACTGGGGCTGCACGGACTCCAAGGGATCGGAGCACACCGTCGACG
GCGTGTCCTATTCCGGCGAGCTGCATTTGGTTCACTGGAACACCACGAAG
TACAAGTCGTTTGGCGAGGCGGCTGCCGCTCCCGACGGCCTGGCCGTGCT
GGGTGTGTTCCTTAAGGCTGGCAATCACCATGCCGAACTGGACAAGGTGA
CCAGCCTGCTGCAGTTCGTGCTGCACAAGGGCGATCGCGTCACCCTCCCC
CAGGGCTGTGATCCCGGCCAGCTGCTGCCCGATGTGCACACCTATTGGAC
CTATGAGGGTTCCCTGACCACTCCACCGTGCTCGGAGTCGGTCATCTGGA
TCGTGTTCAAGACGCCCATCGAAGTGTCCGACGACCAGCTGAACGCCATG
CGCAATCTCAATGCCTACGACGTGAAGGAGGAGTGCCCCTGCAACGAGTT
CAACGGCAAGGTCATCAACAACTTCCGTCCTCCGCTGCCGCTGGGCAAGC
GTGAGCTGCGCGAGATCGGGGGCCACGCAAGCTTTCTAGACCAT

BO07458.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
CAH1-RA 813 CG7820-PA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
CAH1-RA 1456 CG7820-RA 304..1113 17..826 4050 100 Plus
adat-RA 3003 CG16889-RA 1767..2555 826..50 3715 98.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13809034..13809651 209..826 3090 100 Plus
2L 23513712 2L 13808808..13808968 50..210 805 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:01:53 has no hits.

BO07458.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:51 Download gff for BO07458.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 1..813 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:02 Download gff for BO07458.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 295..1116 10..831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:55 Download gff for BO07458.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 304..1113 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:53 Download gff for BO07458.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 295..1116 10..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:06 Download gff for BO07458.complete
Subject Subject Range Query Range Percent Splice Strand
CAH1-RA 304..1113 17..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:06 Download gff for BO07458.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13803929..13803962 17..50 100 -> Plus
2L 13808809..13808967 51..209 100 -> Plus
2L 13809035..13809651 210..828 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:55 Download gff for BO07458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13808809..13808967 51..209 100 -> Plus
arm_2L 13803929..13803962 17..50 100 -> Plus
arm_2L 13809035..13809651 210..828 99   Plus

BO07458.pep Sequence

Translation from 16 to 844

> BO07458.pep
MSHHWGYTEENGPAHWAKEYPQASGHRQSPVDITPSSAKKGSELNVAPLK
WKYVPEHTKSLVNPGYCWRVDVNGADSELTGGPLGDQIFKLEQFHCHWGC
TDSKGSEHTVDGVSYSGELHLVHWNTTKYKSFGEAAAAPDGLAVLGVFLK
AGNHHAELDKVTSLLQFVLHKGDRVTLPQGCDPGQLLPDVHTYWTYEGSL
TTPPCSESVIWIVFKTPIEVSDDQLNAMRNLNAYDVKEECPCNEFNGKVI
NNFRPPLPLGKRELREIGGHASFLDH

BO07458.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
CAH1-PA 270 CG7820-PA 1..270 1..270 1503 100 Plus
CAH2-PA 335 CG6906-PA 24..282 1..264 387 34.9 Plus
CG6074-PA 311 CG6074-PA 22..289 2..270 341 32.7 Plus
CG11284-PE 250 CG11284-PE 4..227 28..254 317 34.5 Plus
CG11284-PD 250 CG11284-PD 4..227 28..254 317 34.5 Plus