Clone Sequence Records
BO07461.3prime Sequence
671 bp (670 high quality bases) assembled on 2006-01-06
> BO07461.3prime
ATGGTCTAGAAAGCTTGCGCGCGCCTGGTTGAATGGGTTGTCTGGTGACT
TGTTCCATTCCTTCATCAGAAGCTGCTTCCACTGGGACATGCGAAGGGAA
GGATTCTCAGCCTTAATGCGGGGCAGATTGTTGGCTTCAAAGGTCTTGTA
GGCGGCGCGCATTCGCTTCTCGGGATGCTTGTCCTCTTCGCTGTCATTTA
CACTGAGCACCACGATGGCCTCGTCAATGTTGGATGCCACATCCGTGTCG
GCCATGGATCGGTTCAGATTCTCCTCGATATGGTTTTGGACCACCACTCG
CGCGGCCATCGGCTTGTTGGCCTCGTTTATCGCCTCGATTACGCGCTGCT
TCTTCTCCATCTCCTCGAGAATCATCTGGCGGTTGATCTTGGCCAGCGGC
TGCTTTCGCTGCGTGTTAATGGATGACATTTCCTGGTCAAGCAGCGCTTT
GGCCTCAGCCTTCCGTTTGGCCGCCTCCGCCCGCTTGCGCTCCTCCTCGT
CCTTGCGCTGTTGTTTCTTGGCCAGATTCTTGTCGTCATCGCGCCACAGG
CGATCCTCCGCCTCCTTGCTCTTCTTCTCCTGCGTGGCCTTCTTGGTGGC
CTCCTTGCGCTCGCGGGCCTCCACCGCCTTCGAGTTGATTCCCATTTTCT
TTGGCATGTCGACTGATAACT
BO07461.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6013-PA | 642 | CG6013-RA | 1..639 | 657..19 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6013-RA | 844 | CG6013-RA | 69..707 | 657..19 | 3195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19031571..19032025 | 657..203 | 2275 | 100 | Minus |
3R | 32079331 | 3R | 19032087..19032272 | 204..19 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:00:12 has no hits.
BO07461.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:18 Download gff for
BO07461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-PA | 1..642 | 15..657 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:44 Download gff for
BO07461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-PA | 1..642 | 15..657 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:55 Download gff for
BO07461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 43..685 | 14..657 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:58:32 Download gff for
BO07461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 69..711 | 14..657 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:58:32 Download gff for
BO07461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19031571..19032025 | 203..657 | 100 | -> | Minus |
3R | 19032089..19032276 | 14..202 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:55 Download gff for
BO07461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14857293..14857747 | 203..657 | 100 | -> | Minus |
arm_3R | 14857811..14857998 | 14..202 | 98 | | Minus |
BO07461.5prime Sequence
671 bp (670 high quality bases) assembled on 2006-01-06
> BO07461.5prime
GAAGTTATCAGTCGACATGCCAAAGAAAATGGGAATCAACTCGAAGGCGG
TGGAGGCCCGCGAGCGCAAGGAGGCCACCAAGAAGGCCACGCAGGAGAAG
AAGAGCAAGGAGGCGGAGGATCGCCTGTGGCGCGATGACGACAAGAATCT
GGCCAAGAAACAACAGCGCAAGGACGAGGAGGAGCGCAAGCGGGCGGAGG
CGGCCAAACGGAAGGCTGAGGCCAAAGCGCTGCTTGACCAGGAAATGTCA
TCCATTAACACGCAGCGAAAGCAGCCGCTGGCCAAGATCAACCGCCAGAT
GATTCTCGAGGAGATGGAGAAGAAGCAGCGCGTAATCGAGGCGATAAACG
AGGCCAACAAGCCGATGGCCGCGCGAGTGGTGGTCCAAAACCATATCGAG
GAGAATCTGAACCGATCCATGGCCGACACGGATGTGGCATCCAACATTGA
CGAGGCCATCGTGGTGCTCAGTGTAAATGACAGCGAAGAGGACAAGCATC
CCGAGAAGCGAATGCGCGCCGCCTACAAGACCTTTGAAGCCAACAATCTG
CCCCGCATTAAGGCTGAGAATCCTTCCCTTCGCATGTCCCAGTGGAAGCA
GCTTCTGATGAAGGAATGGAACAAGTCACCAGACAACCCATTCAACCAGG
CGCGCGCAAGCTTTCTAGACC
BO07461.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6013-PA | 642 | CG6013-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6013-RA | 844 | CG6013-RA | 69..707 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19031571..19032025 | 17..471 | 2275 | 100 | Plus |
3R | 32079331 | 3R | 19032087..19032272 | 470..655 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:00:37 has no hits.
BO07461.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:19 Download gff for
BO07461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-PA | 1..642 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:46 Download gff for
BO07461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-PA | 1..642 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:57 Download gff for
BO07461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 43..685 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:58:39 Download gff for
BO07461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 69..711 | 17..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:58:39 Download gff for
BO07461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19032089..19032276 | 472..660 | 98 | | Plus |
3R | 19031571..19032025 | 17..471 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:57 Download gff for
BO07461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14857293..14857747 | 17..471 | 100 | -> | Plus |
arm_3R | 14857811..14857998 | 472..660 | 98 | | Plus |
BO07461.complete Sequence
673 bp (673 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630795
> BO07461.complete
GAAGTTATCAGTCGACATGCCAAAGAAAATGGGAATCAACTCGAAGGCGG
TGGAGGCCCGCGAGCGCAAGGAGGCCACCAAGAAGGCCACGCAGGAGAAG
AAGAGCAAGGAGGCGGAGGATCGCCTGTGGCGCGATGACGACAAGAATCT
GGCCAAGAAACAACAGCGCAAGGACGAGGAGGAGCGCAAGCGGGCGGAGG
CGGCCAAACGGAAGGCTGAGGCCAAAGCGCTGCTTGACCAGGAAATGTCA
TCCATTAACACGCAGCGAAAGCAGCCGCTGGCCAAGATCAACCGCCAGAT
GATTCTCGAGGAGATGGAGAAGAAGCAGCGCGTAATCGAGGCGATAAACG
AGGCCAACAAGCCGATGGCCGCGCGAGTGGTGGTCCAAAACCATATCGAG
GAGAATCTGAACCGATCCATGGCCGACACGGATGTGGCATCCAACATTGA
CGAGGCCATCGTGGTGCTCAGTGTAAATGACAGCGAAGAGGACAAGCATC
CCGAGAAGCGAATGCGCGCCGCCTACAAGACCTTTGAAGCCAACAATCTG
CCCCGCATTAAGGCTGAGAATCCTTCCCTTCGCATGTCCCAGTGGAAGCA
GCTTCTGATGAAGGAATGGAACAAGTCACCAGACAACCCATTCAACCAGG
CGCGCGCAAGCTTTCTAGACCAT
BO07461.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6013-RA | 642 | CG6013-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6013-RA | 844 | CG6013-RA | 69..707 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19031571..19032025 | 17..471 | 2275 | 100 | Plus |
3R | 32079331 | 3R | 19032087..19032272 | 470..655 | 930 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:12:18 has no hits.
BO07461.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:34 Download gff for
BO07461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 1..642 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:32 Download gff for
BO07461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 43..685 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:29 Download gff for
BO07461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 43..681 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:35 Download gff for
BO07461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 43..685 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:48 Download gff for
BO07461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6013-RA | 69..707 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:48 Download gff for
BO07461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19031571..19032025 | 17..471 | 100 | -> | Plus |
3R | 19032089..19032272 | 472..657 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:29 Download gff for
BO07461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14857293..14857747 | 17..471 | 100 | -> | Plus |
arm_3R | 14857811..14857994 | 472..657 | 98 | | Plus |
BO07461.pep Sequence
Translation from 16 to 673
> BO07461.pep
MPKKMGINSKAVEARERKEATKKATQEKKSKEAEDRLWRDDDKNLAKKQQ
RKDEEERKRAEAAKRKAEAKALLDQEMSSINTQRKQPLAKINRQMILEEM
EKKQRVIEAINEANKPMAARVVVQNHIEENLNRSMADTDVASNIDEAIVV
LSVNDSEEDKHPEKRMRAAYKTFEANNLPRIKAENPSLRMSQWKQLLMKE
WNKSPDNPFNQARASFLDH
BO07461.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6013-PA | 213 | CG6013-PA | 1..213 | 1..213 | 1072 | 100 | Plus |