Clone BO07461 Report

Search the DGRC for BO07461

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG6013-RA
Protein status:BO07461.pep: validated full length
Sequenced Size:673

Clone Sequence Records

BO07461.3prime Sequence

671 bp (670 high quality bases) assembled on 2006-01-06

> BO07461.3prime
ATGGTCTAGAAAGCTTGCGCGCGCCTGGTTGAATGGGTTGTCTGGTGACT
TGTTCCATTCCTTCATCAGAAGCTGCTTCCACTGGGACATGCGAAGGGAA
GGATTCTCAGCCTTAATGCGGGGCAGATTGTTGGCTTCAAAGGTCTTGTA
GGCGGCGCGCATTCGCTTCTCGGGATGCTTGTCCTCTTCGCTGTCATTTA
CACTGAGCACCACGATGGCCTCGTCAATGTTGGATGCCACATCCGTGTCG
GCCATGGATCGGTTCAGATTCTCCTCGATATGGTTTTGGACCACCACTCG
CGCGGCCATCGGCTTGTTGGCCTCGTTTATCGCCTCGATTACGCGCTGCT
TCTTCTCCATCTCCTCGAGAATCATCTGGCGGTTGATCTTGGCCAGCGGC
TGCTTTCGCTGCGTGTTAATGGATGACATTTCCTGGTCAAGCAGCGCTTT
GGCCTCAGCCTTCCGTTTGGCCGCCTCCGCCCGCTTGCGCTCCTCCTCGT
CCTTGCGCTGTTGTTTCTTGGCCAGATTCTTGTCGTCATCGCGCCACAGG
CGATCCTCCGCCTCCTTGCTCTTCTTCTCCTGCGTGGCCTTCTTGGTGGC
CTCCTTGCGCTCGCGGGCCTCCACCGCCTTCGAGTTGATTCCCATTTTCT
TTGGCATGTCGACTGATAACT

BO07461.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6013-PA 642 CG6013-RA 1..639 657..19 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6013-RA 844 CG6013-RA 69..707 657..19 3195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19031571..19032025 657..203 2275 100 Minus
3R 32079331 3R 19032087..19032272 204..19 930 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:00:12 has no hits.

BO07461.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:18 Download gff for BO07461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-PA 1..642 15..657 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:44 Download gff for BO07461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-PA 1..642 15..657 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:55 Download gff for BO07461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 43..685 14..657 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:58:32 Download gff for BO07461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 69..711 14..657 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:58:32 Download gff for BO07461.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19031571..19032025 203..657 100 -> Minus
3R 19032089..19032276 14..202 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:55 Download gff for BO07461.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14857293..14857747 203..657 100 -> Minus
arm_3R 14857811..14857998 14..202 98   Minus

BO07461.5prime Sequence

671 bp (670 high quality bases) assembled on 2006-01-06

> BO07461.5prime
GAAGTTATCAGTCGACATGCCAAAGAAAATGGGAATCAACTCGAAGGCGG
TGGAGGCCCGCGAGCGCAAGGAGGCCACCAAGAAGGCCACGCAGGAGAAG
AAGAGCAAGGAGGCGGAGGATCGCCTGTGGCGCGATGACGACAAGAATCT
GGCCAAGAAACAACAGCGCAAGGACGAGGAGGAGCGCAAGCGGGCGGAGG
CGGCCAAACGGAAGGCTGAGGCCAAAGCGCTGCTTGACCAGGAAATGTCA
TCCATTAACACGCAGCGAAAGCAGCCGCTGGCCAAGATCAACCGCCAGAT
GATTCTCGAGGAGATGGAGAAGAAGCAGCGCGTAATCGAGGCGATAAACG
AGGCCAACAAGCCGATGGCCGCGCGAGTGGTGGTCCAAAACCATATCGAG
GAGAATCTGAACCGATCCATGGCCGACACGGATGTGGCATCCAACATTGA
CGAGGCCATCGTGGTGCTCAGTGTAAATGACAGCGAAGAGGACAAGCATC
CCGAGAAGCGAATGCGCGCCGCCTACAAGACCTTTGAAGCCAACAATCTG
CCCCGCATTAAGGCTGAGAATCCTTCCCTTCGCATGTCCCAGTGGAAGCA
GCTTCTGATGAAGGAATGGAACAAGTCACCAGACAACCCATTCAACCAGG
CGCGCGCAAGCTTTCTAGACC

BO07461.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6013-PA 642 CG6013-RA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6013-RA 844 CG6013-RA 69..707 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19031571..19032025 17..471 2275 100 Plus
3R 32079331 3R 19032087..19032272 470..655 930 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:00:37 has no hits.

BO07461.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:19 Download gff for BO07461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-PA 1..642 17..659 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:46 Download gff for BO07461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-PA 1..642 17..659 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:57 Download gff for BO07461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 43..685 17..660 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:58:39 Download gff for BO07461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 69..711 17..660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:58:39 Download gff for BO07461.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19032089..19032276 472..660 98   Plus
3R 19031571..19032025 17..471 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:57 Download gff for BO07461.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14857293..14857747 17..471 100 -> Plus
arm_3R 14857811..14857998 472..660 98   Plus

BO07461.complete Sequence

673 bp (673 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630795

> BO07461.complete
GAAGTTATCAGTCGACATGCCAAAGAAAATGGGAATCAACTCGAAGGCGG
TGGAGGCCCGCGAGCGCAAGGAGGCCACCAAGAAGGCCACGCAGGAGAAG
AAGAGCAAGGAGGCGGAGGATCGCCTGTGGCGCGATGACGACAAGAATCT
GGCCAAGAAACAACAGCGCAAGGACGAGGAGGAGCGCAAGCGGGCGGAGG
CGGCCAAACGGAAGGCTGAGGCCAAAGCGCTGCTTGACCAGGAAATGTCA
TCCATTAACACGCAGCGAAAGCAGCCGCTGGCCAAGATCAACCGCCAGAT
GATTCTCGAGGAGATGGAGAAGAAGCAGCGCGTAATCGAGGCGATAAACG
AGGCCAACAAGCCGATGGCCGCGCGAGTGGTGGTCCAAAACCATATCGAG
GAGAATCTGAACCGATCCATGGCCGACACGGATGTGGCATCCAACATTGA
CGAGGCCATCGTGGTGCTCAGTGTAAATGACAGCGAAGAGGACAAGCATC
CCGAGAAGCGAATGCGCGCCGCCTACAAGACCTTTGAAGCCAACAATCTG
CCCCGCATTAAGGCTGAGAATCCTTCCCTTCGCATGTCCCAGTGGAAGCA
GCTTCTGATGAAGGAATGGAACAAGTCACCAGACAACCCATTCAACCAGG
CGCGCGCAAGCTTTCTAGACCAT

BO07461.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6013-RA 642 CG6013-PA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6013-RA 844 CG6013-RA 69..707 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19031571..19032025 17..471 2275 100 Plus
3R 32079331 3R 19032087..19032272 470..655 930 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:12:18 has no hits.

BO07461.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:34 Download gff for BO07461.complete
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 1..642 17..659 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:32 Download gff for BO07461.complete
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 43..685 17..660 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:29 Download gff for BO07461.complete
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 43..681 17..657 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:35 Download gff for BO07461.complete
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 43..685 17..660 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:48 Download gff for BO07461.complete
Subject Subject Range Query Range Percent Splice Strand
CG6013-RA 69..707 17..657 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:48 Download gff for BO07461.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19031571..19032025 17..471 100 -> Plus
3R 19032089..19032272 472..657 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:29 Download gff for BO07461.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14857293..14857747 17..471 100 -> Plus
arm_3R 14857811..14857994 472..657 98   Plus

BO07461.pep Sequence

Translation from 16 to 673

> BO07461.pep
MPKKMGINSKAVEARERKEATKKATQEKKSKEAEDRLWRDDDKNLAKKQQ
RKDEEERKRAEAAKRKAEAKALLDQEMSSINTQRKQPLAKINRQMILEEM
EKKQRVIEAINEANKPMAARVVVQNHIEENLNRSMADTDVASNIDEAIVV
LSVNDSEEDKHPEKRMRAAYKTFEANNLPRIKAENPSLRMSQWKQLLMKE
WNKSPDNPFNQARASFLDH

BO07461.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6013-PA 213 CG6013-PA 1..213 1..213 1072 100 Plus