Clone Sequence Records
BO07462.3prime Sequence
890 bp (820 high quality bases) assembled on 2006-01-06
> BO07462.3prime
ATGGTCTAGAAAGCTTGCTTGCGTCTTCAGTTCCTTGCCAATGCTGTACG
AGACGATTTTGCTCCAGTCGATCTTGGTCCTGGTGATGGGCAACTGGCGA
CGCATTGCCTTGAATGTCGTGTCCGACATCGTCTGATAGTTCTCCGAAAT
GGCCAGCTGGTACTCATTCTCGGCGTCCTCGATCAGACGGATCACCTCCT
TGGCCACCTGCTGCTCGTTGCTGACCACCACGCTTTCGCGGCACTCCTTT
GAGGACACCAGCTGGACGTTGCCGTCCTCGTAGTAATGCACCTGCACCTT
GAGCACACCCTTCAGTTCGGCGGTTCCGCTGCCCGCCTGGAAGGTCACAT
GCCACTGGGAGCGCCATCGGCCATTCCAATAGTTCTTCGGCTGGAACTGG
TGGTCTTCGATGCAAATGGTCAGGGTGATCTGGTTGCCCTGCGCCTTTCC
AAAAACAGAGCTGACCCCGTGTCTATAATGACTGGCAGTGTAGGCGAGCG
TCTCCAGGTCGAGGGCCGCCCTCCAGGGCTCCGCAGTGGCATCTGCCTCT
ACGTCCTGGTAGTCGGAAGCCTCTTTTCGGAGGTGGTCGTATTTGAAGGC
TTGCTTTGTGCGCGGGTCGTAGAAGCGACCGTTTCCCAGATCGTTGTGTT
CCGATATGATGGCGTTATGATCGGTGCCCTCGATGCGAACCGGAGTCAGC
TGGTCCTTGTTGTATTGGGCGAAGGCGTGGCTAGCCCCATCCTTTAGCAG
AGTGTCATTCTTGAGGAGCTCCCGCACATCGTTGAACACTTCGTTGAACT
CGCCGGGCGGCGCATGTAGGATGAAGTCCGATACGATGCGCACCTTCTCC
GCATCGGTGATCGGTGTCTGCTCCATGTCGACTGATAACT
BO07462.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10540-PA | 861 | CG10540-RA | 1..858 | 876..19 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cpa-RA | 1918 | CG10540-RA | 236..1093 | 876..19 | 4290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:21:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21058611..21059058 | 466..19 | 2240 | 100 | Minus |
2R | 25286936 | 2R | 21058022..21058263 | 876..635 | 1210 | 100 | Minus |
2R | 25286936 | 2R | 21058383..21058555 | 636..464 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:21:39 has no hits.
BO07462.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:20 Download gff for
BO07462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10540-PA | 1..861 | 15..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:47 Download gff for
BO07462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10540-PA | 1..861 | 15..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:24 Download gff for
BO07462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 226..1097 | 14..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:45 Download gff for
BO07462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 226..1097 | 14..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:45 Download gff for
BO07462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21058012..21058262 | 636..884 | 98 | -> | Minus |
2R | 21058384..21058553 | 466..635 | 100 | -> | Minus |
2R | 21058612..21059062 | 14..465 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:24 Download gff for
BO07462.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16945517..16945767 | 636..884 | 98 | -> | Minus |
arm_2R | 16945889..16946058 | 466..635 | 100 | -> | Minus |
arm_2R | 16946117..16946567 | 14..465 | 99 | | Minus |
BO07462.5prime Sequence
890 bp (881 high quality bases) assembled on 2006-01-06
> BO07462.5prime
GAAGTTATCAGTCGACATGGAGCAGACACCGATCACCGATGCGGAGAAGG
TGCGCATCGTATCGGACTTCATCCTACATGCGCCGCCCGGCGAGTTCAAC
GAAGTGTTCAACGATGTGCGGGAGCTCCTCAAGAATGACACTCTGCTAAA
GGATGGGGCTAGCCACGCCTTCGCCCAATACAACAAGGACCAGCTGACTC
CGGTTCGCATCGAGGGCACCGATCATAACGCCATCATATCGGAACACAAC
GATCTGGGAAACGGTCGCTTCTACGACCCGCGCACAAAGCAAGCCTTCAA
ATACGACCACCTCCGAAAAGAGGCTTCCGACTACCAGGACGTAGAGGCAG
ATGCCACTGCGGAGCCCTGGAGGGCGGCCCTCGACCTGGAGACGCTCGCC
TACACTGCCAGTCATTATAGACACGGGGTCAGCTCTGTTTTTGGAAAGGC
GCAGGGCAACCAGATCACCCTGACCATTTGCATCGAAGACCACCAGTTCC
AGCCGAAGAACTATTGGAATGGCCGATGGCGCTCCCAGTGGCATGTGACC
TTCCAGGCGGGCAGCGGAACCGCCGAACTGAAGGGTGTGCTCAAGGTGCA
GGTGCATTACTACGAGGACGGCAACGTCCAGCTGGTGTCCTCAAAGGAGT
GCCGCGAAAGCGTGGTGGTCAGCAACGAGCAGCAGGTGGCCAAGGAGGTG
ATCCGTCTGATCGAGGACGCCGAGAATGAGTACCAGCTGGCCATTTCGGA
GAACTATCAGACGATGTCGGACACGACATTCAAGGCAATGCGTCGCCAGT
TGCCCATCACCAGGACCAAGATCGACTGGAGCAAAATCGTCTCGTACAGC
ATTGGCAAGGAACTGAAGACGCAAGCAAGCTTTCTAGAAC
BO07462.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10540-PA | 861 | CG10540-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cpa-RA | 1918 | CG10540-RA | 236..1093 | 17..874 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:56:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21058611..21059058 | 427..874 | 2240 | 100 | Plus |
2R | 25286936 | 2R | 21058022..21058263 | 17..258 | 1210 | 100 | Plus |
2R | 25286936 | 2R | 21058383..21058555 | 257..429 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 21:57:00 has no hits.
BO07462.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:21 Download gff for
BO07462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10540-PA | 1..861 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:49 Download gff for
BO07462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10540-PA | 1..861 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:34 Download gff for
BO07462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 226..1097 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:09 Download gff for
BO07462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 226..1097 | 9..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:09 Download gff for
BO07462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21058012..21058262 | 9..257 | 98 | -> | Plus |
2R | 21058384..21058553 | 258..427 | 100 | -> | Plus |
2R | 21058612..21059062 | 428..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:34 Download gff for
BO07462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16945517..16945767 | 9..257 | 98 | -> | Plus |
arm_2R | 16945889..16946058 | 258..427 | 100 | -> | Plus |
arm_2R | 16946117..16946567 | 428..879 | 99 | | Plus |
BO07462.complete Sequence
892 bp (892 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630796
> BO07462.complete
GAAGTTATCAGTCGACATGGAGCAGACACCGATCACCGATGCGGAGAAGG
TGCGCATCGTATCGGACTTCATCCTACATGCGCCGCCCGGCGAGTTCAAC
GAAGTGTTCAACGATGTGCGGGAGCTCCTCAAGAATGACACTCTGCTAAA
GGATGGGGCTAGCCACGCCTTCGCCCAATACAACAAGGACCAGCTGACTC
CGGTTCGCATCGAGGGCACCGATCATAACGCCATCATATCGGAACACAAC
GATCTGGGAAACGGTCGCTTCTACGACCCGCGCACAAAGCAAGCCTTCAA
ATACGACCACCTCCGAAAAGAGGCTTCCGACTACCAGGACGTAGAGGCAG
ATGCCACTGCGGAGCCCTGGAGGGCGGCCCTCGACCTGGAGACGCTCGCC
TACACTGCCAGTCATTATAGACACGGGGTCAGCTCTGTTTTTGGAAAGGC
GCAGGGCAACCAGATCACCCTGACCATTTGCATCGAAGACCACCAGTTCC
AGCCGAAGAACTATTGGAATGGCCGATGGCGCTCCCAGTGGCATGTGACC
TTCCAGGCGGGCAGCGGAACCGCCGAACTGAAGGGTGTGCTCAAGGTGCA
GGTGCATTACTACGAGGACGGCAACGTCCAGCTGGTGTCCTCAAAGGAGT
GCCGCGAAAGCGTGGTGGTCAGCAACGAGCAGCAGGTGGCCAAGGAGGTG
ATCCGTCTGATCGAGGACGCCGAGAATGAGTACCAGCTGGCCATTTCGGA
GAACTATCAGACGATGTCGGACACGACATTCAAGGCAATGCGTCGCCAGT
TGCCCATCACCAGGACCAAGATCGACTGGAGCAAAATCGTCTCGTACAGC
ATTGGCAAGGAACTGAAGACGCAAGCAAGCTTTCTAGACCAT
BO07462.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cpa-RA | 861 | CG10540-PA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cpa-RA | 1918 | CG10540-RA | 236..1093 | 17..874 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21058611..21059058 | 427..874 | 2240 | 100 | Plus |
2R | 25286936 | 2R | 21058022..21058263 | 17..258 | 1210 | 100 | Plus |
2R | 25286936 | 2R | 21058383..21058555 | 257..429 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:58:48 has no hits.
BO07462.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:17 Download gff for
BO07462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 1..861 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:09 Download gff for
BO07462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 222..1093 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:13 Download gff for
BO07462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 236..1093 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:17 Download gff for
BO07462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 222..1093 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:36 Download gff for
BO07462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cpa-RA | 236..1093 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:36 Download gff for
BO07462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21058022..21058262 | 17..257 | 100 | -> | Plus |
2R | 21058384..21058553 | 258..427 | 100 | -> | Plus |
2R | 21058612..21059058 | 428..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:13 Download gff for
BO07462.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16945527..16945767 | 17..257 | 100 | -> | Plus |
arm_2R | 16945889..16946058 | 258..427 | 100 | -> | Plus |
arm_2R | 16946117..16946563 | 428..876 | 99 | | Plus |
BO07462.pep Sequence
Translation from 16 to 892
> BO07462.pep
MEQTPITDAEKVRIVSDFILHAPPGEFNEVFNDVRELLKNDTLLKDGASH
AFAQYNKDQLTPVRIEGTDHNAIISEHNDLGNGRFYDPRTKQAFKYDHLR
KEASDYQDVEADATAEPWRAALDLETLAYTASHYRHGVSSVFGKAQGNQI
TLTICIEDHQFQPKNYWNGRWRSQWHVTFQAGSGTAELKGVLKVQVHYYE
DGNVQLVSSKECRESVVVSNEQQVAKEVIRLIEDAENEYQLAISENYQTM
SDTTFKAMRRQLPITRTKIDWSKIVSYSIGKELKTQASFLDH
BO07462.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cpa-PA | 286 | CG10540-PA | 1..286 | 1..286 | 1500 | 100 | Plus |