Clone BO07464 Report

Search the DGRC for BO07464

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG12736-RA
Protein status:BO07464.pep: validated full length
Sequenced Size:1402

Clone Sequence Records

BO07464.3prime Sequence

889 bp (846 high quality bases) assembled on 2006-01-06

> BO07464.3prime
ATGGTCTAGAAAGCTTGCACAATCCACGAAGACTTTTGATAACTTGTTCT
TGGGCAGGTCAAGGGACGGCAGGCGCTGCGTCACCATACCGGTAGCCACC
GTCGCTCCGTTCTCGCGAATTGTGAAGGCTTGGCCCGGAGTCATGACCAT
TTTCCGCAGCAGCGTGACGCGCACCTGGCCATGCTCACCCGGCATAAGCA
TAGCCTCACTTGGAACTATGTCAATTCTAGCTGGAACATTCCACGTCTGG
CTGAAGAGCTGCTGTATATACTTGGAGAGCATGGGCTTGACACGACCACC
CTCGGCCCGCGATAGCAGATACATGGAGCCTTCAAAGTGGTTGGATATAT
CCTCGGAGCCGGTTGCGCACAGTAGCATTCCCCGCTCCACGGCGGATATC
TTAATACCTCGCAGCAGTGCGCCGACGTTCTCGCCAGCCTGTGCCTGAGG
CACGCTCTTCCGGAATATCTGGATGTCGCTGATGCTTGTCTTCAGGTTCT
GATTGAAGCCCAGTAGGTCTGCATCCGCGTTCCGGGGAATGGTGCCCCTT
TTGATGGTTCCCACGACCACGGTTCCCCTTCCGGGTACCGTAAAAGCATT
GTCTATTGGCAGGATAAATGGGGACGAGATATCGCGCTGCGGCGTTGGTA
TGTAAGAGTCGCATTGCTCAAGTAGCTTTTCAATTGACGGAACCCCGAAC
TCCGATTTATCTTCGCGAAGGGCCAGCAGCGCTGAGCCACAAATTACCGG
GCTATTCACGCCATCAAAGCCGAAATCACTTAGCATCTCACGCATCTCGA
TCTCGACCAGTTCCAGCACCTCCTGGTCCACCAAATCGGCCTTGTTTATA
AACACTATGATGCGCTGGATGCCCACTTGTTTTGCCAGA

BO07464.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-PA 1371 CG12736-RA 498..1368 889..19 4355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-RA 1711 CG12736-RA 744..1614 889..19 4355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7508875..7509548 216..889 3370 100 Plus
2R 25286936 2R 7508624..7508822 19..217 995 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:48:19 has no hits.

BO07464.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:24 Download gff for BO07464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-PA 499..1371 15..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:52 Download gff for BO07464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-PA 499..1371 15..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:45 Download gff for BO07464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 745..1617 15..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:22:34 Download gff for BO07464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 745..1617 15..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:22:34 Download gff for BO07464.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7508621..7508820 15..215 99 <- Plus
2R 7508875..7509547 216..888 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:45 Download gff for BO07464.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3396126..3396325 15..215 99 <- Plus
arm_2R 3396380..3397052 216..888 100   Plus

BO07464.5prime Sequence

875 bp (826 high quality bases) assembled on 2006-01-06

> BO07464.5prime
GAAGTTATCAGTCGACATGAGCGGACTCCTTCCGAAGTTGTGGCGCCAAT
GTGAAGCGGGGCTAGTGCGCCGTATCAGCCAGGCACTGATTGGACCCGGC
GCCAGTCAGAGCCGGTGGACAGGGACCCGTCTCCTGGCCACCAGTGCGGA
TAAAAATCCGGCCCCGGGGCTGCGGGAGCTGCCCCACTGCAATGTGGGCA
CCATTGGTCACGTTGACCATGGTAAAACGACCCTGACCGCCGCCATTACC
AGAATCCAGTCACAGAAGGGTCTGGCGGAGTACCTGTCCTACGACCAGAT
TGATCGGGCGCCCGAGGAGAAGGCGCGTGGCATAACTATAAATGCTTGCC
ATATTGGGTATTCCACTACAGAACGCACCTACGCTCACACGGATTGCCCG
GGTCATGCGGACTACATAAAGAACATGATCTCGGGCGCCTCCCAAATGGA
TGGCGCCATTCTAGTGGTGGCTGCCACCGATGGTCAAATGCCCCAGACTC
GCGAGCACCTTCTTCTGGCAAAACAAGTGGGCATCCAGCGCATCATAGTG
TTTATAAACAAGGCCGATTTGGTGGACCAGGAGGTGCTGGAACTGGTCGA
GATCGAGATGCGTGAGATGCTAAGTGATTTCGGCTTTGATGGCGTGAATA
GCCCGGTAATTTGTGGCTCAGCGCTGCTGGCCCTTCGCGAAGATAAATCG
GAGTTCGGGGTTCCGTCAATTGAAAAGCTACTTGAGCAATGCGACTCTTA
CATACCAACGCCGCAGCGCGATATCTCGTCCCCATTTATCCTGCCAATAG
ACAATGCTTTTACGGTACCCGGAAGGGGAACCGTGGTCGTGGGAACATCA
AAAGGGGCACCATTCCCCGGAACGC

BO07464.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-PA 1371 CG12736-RA 1..830 17..846 4150 100 Plus
CG12736-PA 1371 CG12736-RA 831..860 846..875 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-RA 1711 CG12736-RA 247..1106 17..875 4275 99.9 Plus
EfTuM-RB 1776 CG6050-RB 427..867 181..621 325 72.6 Plus
EfTuM-RA 1720 CG6050-RA 371..811 181..621 325 72.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7509186..7509642 875..420 2235 99.8 Minus
2R 25286936 2R 7509707..7510111 421..17 2025 100 Minus
2R 25286936 2R 13508181..13508423 379..621 315 75.3 Plus
Blast to na_te.dros performed on 2015-02-11 21:57:39 has no hits.

BO07464.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:25 Download gff for BO07464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-PA 1..860 17..875 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:54 Download gff for BO07464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-PA 1..860 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:37 Download gff for BO07464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 240..1106 10..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:49:04 Download gff for BO07464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 240..1106 10..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:49:04 Download gff for BO07464.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7509186..7509640 422..875 99 <- Minus
2R 7509707..7510118 10..421 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:37 Download gff for BO07464.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3396691..3397145 422..875 99 <- Minus
arm_2R 3397212..3397623 10..421 99   Minus

BO07464.complete Sequence

1402 bp assembled on 2007-10-17

GenBank Submission: FJ630797

> BO07464.complete
GAAGTTATCAGTCGACATGAGCGGACTCCTTCCGAAGTTGTGGCGCCAAT
GTGAAGCGGGGCTAGTGCGCCGTATCAGCCAGGCACTGATTGGACCCGGC
GCCAGTCAGAGCCGGTGGACAGGGACCCGTCTCCTGGCCACCAGTGCGGA
TAAAAATCCGGCCCCGGGGCTGCGGGAGCTGCCCCACTGCAATGTGGGCA
CCATTGGTCACGTTGACCATGGTAAAACGACCCTGACCGCCGCCATTACC
AGAATCCAGTCACAGAAGGGTCTGGCGGAGTACCTGTCCTACGACCAGAT
TGATCGGGCGCCCGAGGAGAAGGCGCGTGGCATAACTATAAATGCTTGCC
ATATTGGGTATTCCACTACAGAACGCACCTACGCTCACACGGATTGCCCG
GGTCATGCGGACTACATAAAGAACATGATCTCGGGCGCCTCCCAAATGGA
TGGCGCCATTCTAGTGGTGGCTGCCACCGATGGTCAAATGCCCCAGACTC
GCGAGCACCTTCTTCTGGCAAAACAAGTGGGCATCCAGCGCATCATAGTG
TTTATAAACAAGGCCGATTTGGTGGACCAGGAGGTGCTGGAACTGGTCGA
GATCGAGATGCGTGAGATGCTAAGTGATTTCGGCTTTGATGGCGTGAATA
GCCCGGTAATTTGTGGCTCAGCGCTGCTGGCCCTTCGCGAAGATAAATCG
GAGTTCGGGGTTCCGTCAATTGAAAAGCTACTTGAGCAATGCGACTCTTA
CATACCAACGCCGCAGCGCGATATCTCGTCCCCATTTATCCTGCCAATAG
ACAATGCTTTTACGGTACCCGGAAGGGGAACCGTGGTCGTGGGAACCATC
AAAAGGGGCACCATTCCCCGGAACGCGGATGCAGACCTACTGGGCTTCAA
TCAGAACCTGAAGACAAGCATCAGCGACATCCAGATATTCCGGAAGAGCG
TGCCTCAGGCACAGGCTGGCGAGAACGTCGGCGCACTGCTGCGAGGTATT
AAGATATCCGCCGTGGAGCGGGGAATGCTACTGTGCGCAACCGGCTCCGA
GGATATATCCAACCACTTTGAAGGCTCCATGTATCTGCTATCGCGGGCCG
AGGGTGGTCGTGTCAAGCCCATGCTCTCCAAGTATATACAGCAGCTCTTC
AGCCAGACGTGGAATGTTCCAGCTAGAATTGACATAGTTCCAAGTGAGGC
TATGCTTATGCCGGGTGAGCATGGCCAGGTGCGCGTCACGCTGCTGCGGA
AAATGGTCATGACTCCGGGCCAAGCCTTCACAATTCGCGAGAACGGAGCG
ACGGTGGCTACCGGTATGGTGACGCAGCGCCTGCCGTCCCTTGACCTGCC
CAAGAACAAGTTATCAAAAGTCTTCGTGGATTGTGCAAGCTTTCTAGACC
AT

BO07464.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-RA 1371 CG12736-PA 1..1368 17..1384 6840 100 Plus
EfTuM-RB 1470 CG6050-PB 438..680 379..621 315 75.3 Plus
EfTuM-RA 1470 CG6050-PA 438..680 379..621 315 75.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-RA 1711 CG12736-RA 247..1614 17..1384 6840 100 Plus
EfTuM-RB 1776 CG6050-RB 625..867 379..621 315 75.3 Plus
EfTuM-RA 1720 CG6050-RA 569..811 379..621 315 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7508875..7509642 1187..420 3840 100 Minus
2R 25286936 2R 7509707..7510111 421..17 2025 100 Minus
2R 25286936 2R 7508624..7508822 1384..1186 995 100 Minus
2R 25286936 2R 13508181..13508423 379..621 315 75.3 Plus
Blast to na_te.dros performed on 2014-11-27 23:44:12 has no hits.

BO07464.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:20 Download gff for BO07464.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 1..1371 17..1388 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:49 Download gff for BO07464.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 344..1711 17..1386 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:41 Download gff for BO07464.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 247..1614 17..1386 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:55:20 Download gff for BO07464.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 337..1714 10..1388 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:10 Download gff for BO07464.complete
Subject Subject Range Query Range Percent Splice Strand
CG12736-RA 247..1614 17..1386 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:10 Download gff for BO07464.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7508622..7508820 1188..1386 98 <- Minus
2R 7508875..7509640 422..1187 100 <- Minus
2R 7509707..7510111 17..421 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:41 Download gff for BO07464.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3396127..3396325 1188..1386 98 <- Minus
arm_2R 3396380..3397145 422..1187 100 <- Minus
arm_2R 3397212..3397616 17..421 100   Minus

BO07464.pep Sequence

Translation from 16 to 1402

> BO07464.pep
MSGLLPKLWRQCEAGLVRRISQALIGPGASQSRWTGTRLLATSADKNPAP
GLRELPHCNVGTIGHVDHGKTTLTAAITRIQSQKGLAEYLSYDQIDRAPE
EKARGITINACHIGYSTTERTYAHTDCPGHADYIKNMISGASQMDGAILV
VAATDGQMPQTREHLLLAKQVGIQRIIVFINKADLVDQEVLELVEIEMRE
MLSDFGFDGVNSPVICGSALLALREDKSEFGVPSIEKLLEQCDSYIPTPQ
RDISSPFILPIDNAFTVPGRGTVVVGTIKRGTIPRNADADLLGFNQNLKT
SISDIQIFRKSVPQAQAGENVGALLRGIKISAVERGMLLCATGSEDISNH
FEGSMYLLSRAEGGRVKPMLSKYIQQLFSQTWNVPARIDIVPSEAMLMPG
EHGQVRVTLLRKMVMTPGQAFTIRENGATVATGMVTQRLPSLDLPKNKLS
KVFVDCASFLDH

BO07464.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12736-PA 456 CG12736-PA 1..456 1..456 2334 100 Plus
EfTuM-PB 489 CG6050-PB 48..466 34..442 1148 51.2 Plus
EfTuM-PA 489 CG6050-PA 48..466 34..442 1148 51.2 Plus
Ef1alpha100E-PD 462 CG1873-PD 3..323 53..336 321 28.1 Plus
Ef1alpha100E-PC 462 CG1873-PC 3..323 53..336 321 28.1 Plus