Clone Sequence Records
BO07464.3prime Sequence
889 bp (846 high quality bases) assembled on 2006-01-06
> BO07464.3prime
ATGGTCTAGAAAGCTTGCACAATCCACGAAGACTTTTGATAACTTGTTCT
TGGGCAGGTCAAGGGACGGCAGGCGCTGCGTCACCATACCGGTAGCCACC
GTCGCTCCGTTCTCGCGAATTGTGAAGGCTTGGCCCGGAGTCATGACCAT
TTTCCGCAGCAGCGTGACGCGCACCTGGCCATGCTCACCCGGCATAAGCA
TAGCCTCACTTGGAACTATGTCAATTCTAGCTGGAACATTCCACGTCTGG
CTGAAGAGCTGCTGTATATACTTGGAGAGCATGGGCTTGACACGACCACC
CTCGGCCCGCGATAGCAGATACATGGAGCCTTCAAAGTGGTTGGATATAT
CCTCGGAGCCGGTTGCGCACAGTAGCATTCCCCGCTCCACGGCGGATATC
TTAATACCTCGCAGCAGTGCGCCGACGTTCTCGCCAGCCTGTGCCTGAGG
CACGCTCTTCCGGAATATCTGGATGTCGCTGATGCTTGTCTTCAGGTTCT
GATTGAAGCCCAGTAGGTCTGCATCCGCGTTCCGGGGAATGGTGCCCCTT
TTGATGGTTCCCACGACCACGGTTCCCCTTCCGGGTACCGTAAAAGCATT
GTCTATTGGCAGGATAAATGGGGACGAGATATCGCGCTGCGGCGTTGGTA
TGTAAGAGTCGCATTGCTCAAGTAGCTTTTCAATTGACGGAACCCCGAAC
TCCGATTTATCTTCGCGAAGGGCCAGCAGCGCTGAGCCACAAATTACCGG
GCTATTCACGCCATCAAAGCCGAAATCACTTAGCATCTCACGCATCTCGA
TCTCGACCAGTTCCAGCACCTCCTGGTCCACCAAATCGGCCTTGTTTATA
AACACTATGATGCGCTGGATGCCCACTTGTTTTGCCAGA
BO07464.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12736-PA | 1371 | CG12736-RA | 498..1368 | 889..19 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12736-RA | 1711 | CG12736-RA | 744..1614 | 889..19 | 4355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7508875..7509548 | 216..889 | 3370 | 100 | Plus |
2R | 25286936 | 2R | 7508624..7508822 | 19..217 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:48:19 has no hits.
BO07464.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:24 Download gff for
BO07464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12736-PA | 499..1371 | 15..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:52 Download gff for
BO07464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12736-PA | 499..1371 | 15..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:45 Download gff for
BO07464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12736-RA | 745..1617 | 15..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:22:34 Download gff for
BO07464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12736-RA | 745..1617 | 15..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:22:34 Download gff for
BO07464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7508621..7508820 | 15..215 | 99 | <- | Plus |
2R | 7508875..7509547 | 216..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:45 Download gff for
BO07464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3396126..3396325 | 15..215 | 99 | <- | Plus |
arm_2R | 3396380..3397052 | 216..888 | 100 | | Plus |
BO07464.5prime Sequence
875 bp (826 high quality bases) assembled on 2006-01-06
> BO07464.5prime
GAAGTTATCAGTCGACATGAGCGGACTCCTTCCGAAGTTGTGGCGCCAAT
GTGAAGCGGGGCTAGTGCGCCGTATCAGCCAGGCACTGATTGGACCCGGC
GCCAGTCAGAGCCGGTGGACAGGGACCCGTCTCCTGGCCACCAGTGCGGA
TAAAAATCCGGCCCCGGGGCTGCGGGAGCTGCCCCACTGCAATGTGGGCA
CCATTGGTCACGTTGACCATGGTAAAACGACCCTGACCGCCGCCATTACC
AGAATCCAGTCACAGAAGGGTCTGGCGGAGTACCTGTCCTACGACCAGAT
TGATCGGGCGCCCGAGGAGAAGGCGCGTGGCATAACTATAAATGCTTGCC
ATATTGGGTATTCCACTACAGAACGCACCTACGCTCACACGGATTGCCCG
GGTCATGCGGACTACATAAAGAACATGATCTCGGGCGCCTCCCAAATGGA
TGGCGCCATTCTAGTGGTGGCTGCCACCGATGGTCAAATGCCCCAGACTC
GCGAGCACCTTCTTCTGGCAAAACAAGTGGGCATCCAGCGCATCATAGTG
TTTATAAACAAGGCCGATTTGGTGGACCAGGAGGTGCTGGAACTGGTCGA
GATCGAGATGCGTGAGATGCTAAGTGATTTCGGCTTTGATGGCGTGAATA
GCCCGGTAATTTGTGGCTCAGCGCTGCTGGCCCTTCGCGAAGATAAATCG
GAGTTCGGGGTTCCGTCAATTGAAAAGCTACTTGAGCAATGCGACTCTTA
CATACCAACGCCGCAGCGCGATATCTCGTCCCCATTTATCCTGCCAATAG
ACAATGCTTTTACGGTACCCGGAAGGGGAACCGTGGTCGTGGGAACATCA
AAAGGGGCACCATTCCCCGGAACGC
BO07464.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12736-PA | 1371 | CG12736-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
CG12736-PA | 1371 | CG12736-RA | 831..860 | 846..875 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12736-RA | 1711 | CG12736-RA | 247..1106 | 17..875 | 4275 | 99.9 | Plus |
EfTuM-RB | 1776 | CG6050-RB | 427..867 | 181..621 | 325 | 72.6 | Plus |
EfTuM-RA | 1720 | CG6050-RA | 371..811 | 181..621 | 325 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7509186..7509642 | 875..420 | 2235 | 99.8 | Minus |
2R | 25286936 | 2R | 7509707..7510111 | 421..17 | 2025 | 100 | Minus |
2R | 25286936 | 2R | 13508181..13508423 | 379..621 | 315 | 75.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 21:57:39 has no hits.
BO07464.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:25 Download gff for
BO07464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12736-PA | 1..860 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:54 Download gff for
BO07464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12736-PA | 1..860 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:37 Download gff for
BO07464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12736-RA | 240..1106 | 10..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:49:04 Download gff for
BO07464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12736-RA | 240..1106 | 10..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:49:04 Download gff for
BO07464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7509186..7509640 | 422..875 | 99 | <- | Minus |
2R | 7509707..7510118 | 10..421 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:37 Download gff for
BO07464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3396691..3397145 | 422..875 | 99 | <- | Minus |
arm_2R | 3397212..3397623 | 10..421 | 99 | | Minus |
BO07464.complete Sequence
1402 bp assembled on 2007-10-17
GenBank Submission: FJ630797
> BO07464.complete
GAAGTTATCAGTCGACATGAGCGGACTCCTTCCGAAGTTGTGGCGCCAAT
GTGAAGCGGGGCTAGTGCGCCGTATCAGCCAGGCACTGATTGGACCCGGC
GCCAGTCAGAGCCGGTGGACAGGGACCCGTCTCCTGGCCACCAGTGCGGA
TAAAAATCCGGCCCCGGGGCTGCGGGAGCTGCCCCACTGCAATGTGGGCA
CCATTGGTCACGTTGACCATGGTAAAACGACCCTGACCGCCGCCATTACC
AGAATCCAGTCACAGAAGGGTCTGGCGGAGTACCTGTCCTACGACCAGAT
TGATCGGGCGCCCGAGGAGAAGGCGCGTGGCATAACTATAAATGCTTGCC
ATATTGGGTATTCCACTACAGAACGCACCTACGCTCACACGGATTGCCCG
GGTCATGCGGACTACATAAAGAACATGATCTCGGGCGCCTCCCAAATGGA
TGGCGCCATTCTAGTGGTGGCTGCCACCGATGGTCAAATGCCCCAGACTC
GCGAGCACCTTCTTCTGGCAAAACAAGTGGGCATCCAGCGCATCATAGTG
TTTATAAACAAGGCCGATTTGGTGGACCAGGAGGTGCTGGAACTGGTCGA
GATCGAGATGCGTGAGATGCTAAGTGATTTCGGCTTTGATGGCGTGAATA
GCCCGGTAATTTGTGGCTCAGCGCTGCTGGCCCTTCGCGAAGATAAATCG
GAGTTCGGGGTTCCGTCAATTGAAAAGCTACTTGAGCAATGCGACTCTTA
CATACCAACGCCGCAGCGCGATATCTCGTCCCCATTTATCCTGCCAATAG
ACAATGCTTTTACGGTACCCGGAAGGGGAACCGTGGTCGTGGGAACCATC
AAAAGGGGCACCATTCCCCGGAACGCGGATGCAGACCTACTGGGCTTCAA
TCAGAACCTGAAGACAAGCATCAGCGACATCCAGATATTCCGGAAGAGCG
TGCCTCAGGCACAGGCTGGCGAGAACGTCGGCGCACTGCTGCGAGGTATT
AAGATATCCGCCGTGGAGCGGGGAATGCTACTGTGCGCAACCGGCTCCGA
GGATATATCCAACCACTTTGAAGGCTCCATGTATCTGCTATCGCGGGCCG
AGGGTGGTCGTGTCAAGCCCATGCTCTCCAAGTATATACAGCAGCTCTTC
AGCCAGACGTGGAATGTTCCAGCTAGAATTGACATAGTTCCAAGTGAGGC
TATGCTTATGCCGGGTGAGCATGGCCAGGTGCGCGTCACGCTGCTGCGGA
AAATGGTCATGACTCCGGGCCAAGCCTTCACAATTCGCGAGAACGGAGCG
ACGGTGGCTACCGGTATGGTGACGCAGCGCCTGCCGTCCCTTGACCTGCC
CAAGAACAAGTTATCAAAAGTCTTCGTGGATTGTGCAAGCTTTCTAGACC
AT
BO07464.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12736-RA | 1371 | CG12736-PA | 1..1368 | 17..1384 | 6840 | 100 | Plus |
EfTuM-RB | 1470 | CG6050-PB | 438..680 | 379..621 | 315 | 75.3 | Plus |
EfTuM-RA | 1470 | CG6050-PA | 438..680 | 379..621 | 315 | 75.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12736-RA | 1711 | CG12736-RA | 247..1614 | 17..1384 | 6840 | 100 | Plus |
EfTuM-RB | 1776 | CG6050-RB | 625..867 | 379..621 | 315 | 75.3 | Plus |
EfTuM-RA | 1720 | CG6050-RA | 569..811 | 379..621 | 315 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7508875..7509642 | 1187..420 | 3840 | 100 | Minus |
2R | 25286936 | 2R | 7509707..7510111 | 421..17 | 2025 | 100 | Minus |
2R | 25286936 | 2R | 7508624..7508822 | 1384..1186 | 995 | 100 | Minus |
2R | 25286936 | 2R | 13508181..13508423 | 379..621 | 315 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:44:12 has no hits.
BO07464.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:20 Download gff for
BO07464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12736-RA | 1..1371 | 17..1388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:49 Download gff for
BO07464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12736-RA | 344..1711 | 17..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:41 Download gff for
BO07464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12736-RA | 247..1614 | 17..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:55:20 Download gff for
BO07464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12736-RA | 337..1714 | 10..1388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:10 Download gff for
BO07464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12736-RA | 247..1614 | 17..1386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:10 Download gff for
BO07464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7508622..7508820 | 1188..1386 | 98 | <- | Minus |
2R | 7508875..7509640 | 422..1187 | 100 | <- | Minus |
2R | 7509707..7510111 | 17..421 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:41 Download gff for
BO07464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3396127..3396325 | 1188..1386 | 98 | <- | Minus |
arm_2R | 3396380..3397145 | 422..1187 | 100 | <- | Minus |
arm_2R | 3397212..3397616 | 17..421 | 100 | | Minus |
BO07464.pep Sequence
Translation from 16 to 1402
> BO07464.pep
MSGLLPKLWRQCEAGLVRRISQALIGPGASQSRWTGTRLLATSADKNPAP
GLRELPHCNVGTIGHVDHGKTTLTAAITRIQSQKGLAEYLSYDQIDRAPE
EKARGITINACHIGYSTTERTYAHTDCPGHADYIKNMISGASQMDGAILV
VAATDGQMPQTREHLLLAKQVGIQRIIVFINKADLVDQEVLELVEIEMRE
MLSDFGFDGVNSPVICGSALLALREDKSEFGVPSIEKLLEQCDSYIPTPQ
RDISSPFILPIDNAFTVPGRGTVVVGTIKRGTIPRNADADLLGFNQNLKT
SISDIQIFRKSVPQAQAGENVGALLRGIKISAVERGMLLCATGSEDISNH
FEGSMYLLSRAEGGRVKPMLSKYIQQLFSQTWNVPARIDIVPSEAMLMPG
EHGQVRVTLLRKMVMTPGQAFTIRENGATVATGMVTQRLPSLDLPKNKLS
KVFVDCASFLDH
BO07464.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12736-PA | 456 | CG12736-PA | 1..456 | 1..456 | 2334 | 100 | Plus |
EfTuM-PB | 489 | CG6050-PB | 48..466 | 34..442 | 1148 | 51.2 | Plus |
EfTuM-PA | 489 | CG6050-PA | 48..466 | 34..442 | 1148 | 51.2 | Plus |
Ef1alpha100E-PD | 462 | CG1873-PD | 3..323 | 53..336 | 321 | 28.1 | Plus |
Ef1alpha100E-PC | 462 | CG1873-PC | 3..323 | 53..336 | 321 | 28.1 | Plus |