Clone Sequence Records
BO07468.3prime Sequence
821 bp (820 high quality bases) assembled on 2006-01-06
> BO07468.3prime
ATGGTCTAGAAAGCTTGCCTGCTCGTAGTAAACCGCGTCAATCAAAAAGA
GCGCTGCGAATATGAGCGCCTTCATGCGGACATCCAGATTCAGGGGGAAG
GTGACGCTGAAGTAGTCCGCATCGGTGAACAGCTCCCTTCCCAGTCCGGA
CCATTGTTTGCTGATTTTGCCGATCTCCTCGTTGTTGGCGCTCAATACCT
TGAAGTTGGTATCGCTGAAGCACTTGCAGGGACAGACGGGTCCCTCGATC
TGCAGGACGGTATCGCCGCATGTGTTCTTGATGTTGAACTTGGGCCGCAT
GAAGGTGCAGACCTGCTCAACGCTACCGATCACCTGGCCGGGTGGCGCCG
ACACCTCCACGGCGTTCATGCAGCTGGGAAAGCAGCAGAGGATGTCGCAC
TTGAAGGGCCGGTACAGGTGGAGCACCTCGTTCTGAAAATTGTCCAGTAT
CTTCATCTCGAAGGGGCGCGACCGGCCGAGCATGTTGCGGGTGCAGCAGT
CGCTCTCCTCGTACGCGAAGTACACATTCTGGCCCAGTGAGTTCTTCACC
TTGAAGCGGTTCTTCGTCTCGAAGCCGGTGAGCAGCTCCAGTTTCTCGAT
CTTCTGCGACACGAGCAACTGGTCCAGAGCGGTCAGGTATTCCAGTCCCT
GCGGGCAGTTGGGCATGCCCACGGGTATCGACATCCAGTTTTCAGGTCCG
TTGGCATTGTTGCCAACATTCGCCGCCTGCGGCTGCAGGACCACTGCGCC
ATTCTCGTCCTGCGGTGCATTCTGCGGGAGCACCTTGTACTCGCTCATCT
GCATCATGTCGACTGATAACT
BO07468.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1893-PA | 792 | CG1893-RA | 1..789 | 807..19 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb2-RA | 1586 | CG1893-RA | 62..850 | 807..19 | 3945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3045721..3046217 | 197..693 | 2485 | 100 | Plus |
3L | 28110227 | 3L | 3044972..3045133 | 39..200 | 810 | 100 | Plus |
3L | 28110227 | 3L | 3046637..3046751 | 693..807 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:31:57 has no hits.
BO07468.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:33 Download gff for
BO07468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1893-PA | 1..792 | 18..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:04 Download gff for
BO07468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1893-PA | 1..792 | 18..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:12 Download gff for
BO07468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 62..856 | 12..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:20:40 Download gff for
BO07468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 62..856 | 12..807 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:20:40 Download gff for
BO07468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3044973..3045131 | 40..198 | 100 | <- | Plus |
3L | 3045723..3046216 | 199..692 | 100 | <- | Plus |
3L | 3046637..3046751 | 693..807 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:12 Download gff for
BO07468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3044973..3045131 | 40..198 | 100 | <- | Plus |
arm_3L | 3045723..3046216 | 199..692 | 100 | <- | Plus |
arm_3L | 3046637..3046751 | 693..807 | 100 | | Plus |
BO07468.5prime Sequence
821 bp (820 high quality bases) assembled on 2006-01-06
> BO07468.5prime
GAAGTTATCAGTCGACATGATGCAGATGAGCGAGTACAAGGTGCTCCCGC
AGAATGCACCGCAGGACGAGAATGGCGCAGTGGTCCTGCAGCCGCAGGCG
GCGAATGTTGGCAACAATGCCAACGGACCTGAAAACTGGATGTCGATACC
CGTGGGCATGCCCAACTGCCCGCAGGGACTGGAATACCTGACCGCTCTGG
ACCAGTTGCTCGTGTCGCAGAAGATCGAGAAACTGGAGCTGCTCACCGGC
TTCGAGACGAAGAACCGCTTCAAGGTGAAGAACTCACTGGGCCAGAATGT
GTACTTCGCGTACGAGGAGAGCGACTGCTGCACCCGCAACATGCTCGGCC
GGTCGCGCCCCTTCGAGATGAAGATACTGGACAATTTTCAGAACGAGGTG
CTCCACCTGTACCGGCCCTTCAAGTGCGACATCCTCTGCTGCTTTCCCAG
CTGCATGAACGCCGTGGAGGTGTCGGCGCCACCCGGCCAGGTGATCGGTA
GCGTTGAGCAGGTCTGCACCTTCATGCGGCCCAAGTTCAACATCAAGAAC
ACATGCGGCGATACCGTCCTGCAGATCGAGGGACCCGTCTGTCCCTGCAA
GTGCTTCAGCGATACCAACTTCAAGGTATTGAGCGCCAACAACGAGGAGA
TCGGCAAAATCAGCAAACAATGGTCCGGACTGGGAAGGGAGCTGTTCACC
GATGCGGACTACTTCAGCGTCACCTTCCCCCTGAATCTGGATGTCCGCAT
GAAGGCGCTCATATTCGCAGCGCTCTTTTTGATTGACGCGGTTTACTACG
AGCAGGCAAGCTTTCTAGACC
BO07468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1893-PA | 792 | CG1893-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb2-RA | 1586 | CG1893-RA | 62..850 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3045721..3046217 | 627..131 | 2485 | 100 | Minus |
3L | 28110227 | 3L | 3044972..3045133 | 785..624 | 810 | 100 | Minus |
3L | 28110227 | 3L | 3046637..3046751 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:00:22 has no hits.
BO07468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:34 Download gff for
BO07468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1893-PA | 1..792 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:06 Download gff for
BO07468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1893-PA | 1..792 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:44 Download gff for
BO07468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 62..856 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:52 Download gff for
BO07468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 62..856 | 17..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:52 Download gff for
BO07468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3044973..3045131 | 626..784 | 100 | <- | Minus |
3L | 3045723..3046216 | 132..625 | 100 | <- | Minus |
3L | 3046637..3046751 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:44 Download gff for
BO07468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3044973..3045131 | 626..784 | 100 | <- | Minus |
arm_3L | 3045723..3046216 | 132..625 | 100 | <- | Minus |
arm_3L | 3046637..3046751 | 17..131 | 100 | | Minus |
BO07468.complete Sequence
823 bp (823 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630798
> BO07468.complete
GAAGTTATCAGTCGACATGATGCAGATGAGCGAGTACAAGGTGCTCCCGC
AGAATGCACCGCAGGACGAGAATGGCGCAGTGGTCCTGCAGCCGCAGGCG
GCGAATGTTGGCAACAATGCCAACGGACCTGAAAACTGGATGTCGATACC
CGTGGGCATGCCCAACTGCCCGCAGGGACTGGAATACCTGACCGCTCTGG
ACCAGTTGCTCGTGTCGCAGAAGATCGAGAAACTGGAGCTGCTCACCGGC
TTCGAGACGAAGAACCGCTTCAAGGTGAAGAACTCACTGGGCCAGAATGT
GTACTTCGCGTACGAGGAGAGCGACTGCTGCACCCGCAACATGCTCGGCC
GGTCGCGCCCCTTCGAGATGAAGATACTGGACAATTTTCAGAACGAGGTG
CTCCACCTGTACCGGCCCTTCAAGTGCGACATCCTCTGCTGCTTTCCCAG
CTGCATGAACGCCGTGGAGGTGTCGGCGCCACCCGGCCAGGTGATCGGTA
GCGTTGAGCAGGTCTGCACCTTCATGCGGCCCAAGTTCAACATCAAGAAC
ACATGCGGCGATACCGTCCTGCAGATCGAGGGACCCGTCTGTCCCTGCAA
GTGCTTCAGCGATACCAACTTCAAGGTATTGAGCGCCAACAACGAGGAGA
TCGGCAAAATCAGCAAACAATGGTCCGGACTGGGAAGGGAGCTGTTCACC
GATGCGGACTACTTCAGCGTCACCTTCCCCCTGAATCTGGATGTCCGCAT
GAAGGCGCTCATATTCGCAGCGCTCTTTTTGATTGACGCGGTTTACTACG
AGCAGGCAAGCTTTCTAGACCAT
BO07468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb2-RA | 792 | CG1893-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb2-RA | 1586 | CG1893-RA | 62..850 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3045721..3046217 | 627..131 | 2485 | 100 | Minus |
3L | 28110227 | 3L | 3044972..3045133 | 785..624 | 810 | 100 | Minus |
3L | 28110227 | 3L | 3046637..3046751 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:19:22 has no hits.
BO07468.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:19 Download gff for
BO07468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 1..792 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:11 Download gff for
BO07468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 60..854 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:38 Download gff for
BO07468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 62..850 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:19 Download gff for
BO07468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 60..854 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:49 Download gff for
BO07468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb2-RA | 62..850 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:49 Download gff for
BO07468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3044973..3045131 | 626..784 | 100 | <- | Minus |
3L | 3044847..3044869 | 785..807 | 91 | <- | Minus |
3L | 3045723..3046216 | 132..625 | 100 | <- | Minus |
3L | 3046637..3046751 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:38 Download gff for
BO07468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3044847..3044869 | 785..807 | 91 | <- | Minus |
arm_3L | 3044973..3045131 | 626..784 | 100 | <- | Minus |
arm_3L | 3045723..3046216 | 132..625 | 100 | <- | Minus |
arm_3L | 3046637..3046751 | 17..131 | 100 | | Minus |
BO07468.pep Sequence
Translation from 16 to 823
> BO07468.pep
MMQMSEYKVLPQNAPQDENGAVVLQPQAANVGNNANGPENWMSIPVGMPN
CPQGLEYLTALDQLLVSQKIEKLELLTGFETKNRFKVKNSLGQNVYFAYE
ESDCCTRNMLGRSRPFEMKILDNFQNEVLHLYRPFKCDILCCFPSCMNAV
EVSAPPGQVIGSVEQVCTFMRPKFNIKNTCGDTVLQIEGPVCPCKCFSDT
NFKVLSANNEEIGKISKQWSGLGRELFTDADYFSVTFPLNLDVRMKALIF
AALFLIDAVYYEQASFLDH
BO07468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb2-PA | 263 | CG1893-PA | 1..263 | 1..263 | 1404 | 100 | Plus |
scramb1-PA | 416 | CG32056-PA | 182..405 | 40..264 | 765 | 60 | Plus |
scramb1-PB | 233 | CG32056-PB | 1..222 | 42..264 | 753 | 60.1 | Plus |
scramb1-PC | 332 | CG32056-PC | 101..321 | 43..264 | 748 | 59.9 | Plus |
CG9084-PB | 275 | CG9084-PB | 67..272 | 54..262 | 231 | 30.8 | Plus |