Clone BO07468 Report

Search the DGRC for BO07468

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:68
Vector:pDNR-Dual
Associated Gene/Transcriptscramb2-RA
Protein status:BO07468.pep: validated full length
Sequenced Size:823

Clone Sequence Records

BO07468.3prime Sequence

821 bp (820 high quality bases) assembled on 2006-01-06

> BO07468.3prime
ATGGTCTAGAAAGCTTGCCTGCTCGTAGTAAACCGCGTCAATCAAAAAGA
GCGCTGCGAATATGAGCGCCTTCATGCGGACATCCAGATTCAGGGGGAAG
GTGACGCTGAAGTAGTCCGCATCGGTGAACAGCTCCCTTCCCAGTCCGGA
CCATTGTTTGCTGATTTTGCCGATCTCCTCGTTGTTGGCGCTCAATACCT
TGAAGTTGGTATCGCTGAAGCACTTGCAGGGACAGACGGGTCCCTCGATC
TGCAGGACGGTATCGCCGCATGTGTTCTTGATGTTGAACTTGGGCCGCAT
GAAGGTGCAGACCTGCTCAACGCTACCGATCACCTGGCCGGGTGGCGCCG
ACACCTCCACGGCGTTCATGCAGCTGGGAAAGCAGCAGAGGATGTCGCAC
TTGAAGGGCCGGTACAGGTGGAGCACCTCGTTCTGAAAATTGTCCAGTAT
CTTCATCTCGAAGGGGCGCGACCGGCCGAGCATGTTGCGGGTGCAGCAGT
CGCTCTCCTCGTACGCGAAGTACACATTCTGGCCCAGTGAGTTCTTCACC
TTGAAGCGGTTCTTCGTCTCGAAGCCGGTGAGCAGCTCCAGTTTCTCGAT
CTTCTGCGACACGAGCAACTGGTCCAGAGCGGTCAGGTATTCCAGTCCCT
GCGGGCAGTTGGGCATGCCCACGGGTATCGACATCCAGTTTTCAGGTCCG
TTGGCATTGTTGCCAACATTCGCCGCCTGCGGCTGCAGGACCACTGCGCC
ATTCTCGTCCTGCGGTGCATTCTGCGGGAGCACCTTGTACTCGCTCATCT
GCATCATGTCGACTGATAACT

BO07468.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1893-PA 792 CG1893-RA 1..789 807..19 3945 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
scramb2-RA 1586 CG1893-RA 62..850 807..19 3945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3045721..3046217 197..693 2485 100 Plus
3L 28110227 3L 3044972..3045133 39..200 810 100 Plus
3L 28110227 3L 3046637..3046751 693..807 575 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:31:57 has no hits.

BO07468.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:33 Download gff for BO07468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1893-PA 1..792 18..807 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:04 Download gff for BO07468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1893-PA 1..792 18..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:12 Download gff for BO07468.3prime
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 62..856 12..807 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:20:40 Download gff for BO07468.3prime
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 62..856 12..807 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:20:40 Download gff for BO07468.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3044973..3045131 40..198 100 <- Plus
3L 3045723..3046216 199..692 100 <- Plus
3L 3046637..3046751 693..807 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:12 Download gff for BO07468.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3044973..3045131 40..198 100 <- Plus
arm_3L 3045723..3046216 199..692 100 <- Plus
arm_3L 3046637..3046751 693..807 100   Plus

BO07468.5prime Sequence

821 bp (820 high quality bases) assembled on 2006-01-06

> BO07468.5prime
GAAGTTATCAGTCGACATGATGCAGATGAGCGAGTACAAGGTGCTCCCGC
AGAATGCACCGCAGGACGAGAATGGCGCAGTGGTCCTGCAGCCGCAGGCG
GCGAATGTTGGCAACAATGCCAACGGACCTGAAAACTGGATGTCGATACC
CGTGGGCATGCCCAACTGCCCGCAGGGACTGGAATACCTGACCGCTCTGG
ACCAGTTGCTCGTGTCGCAGAAGATCGAGAAACTGGAGCTGCTCACCGGC
TTCGAGACGAAGAACCGCTTCAAGGTGAAGAACTCACTGGGCCAGAATGT
GTACTTCGCGTACGAGGAGAGCGACTGCTGCACCCGCAACATGCTCGGCC
GGTCGCGCCCCTTCGAGATGAAGATACTGGACAATTTTCAGAACGAGGTG
CTCCACCTGTACCGGCCCTTCAAGTGCGACATCCTCTGCTGCTTTCCCAG
CTGCATGAACGCCGTGGAGGTGTCGGCGCCACCCGGCCAGGTGATCGGTA
GCGTTGAGCAGGTCTGCACCTTCATGCGGCCCAAGTTCAACATCAAGAAC
ACATGCGGCGATACCGTCCTGCAGATCGAGGGACCCGTCTGTCCCTGCAA
GTGCTTCAGCGATACCAACTTCAAGGTATTGAGCGCCAACAACGAGGAGA
TCGGCAAAATCAGCAAACAATGGTCCGGACTGGGAAGGGAGCTGTTCACC
GATGCGGACTACTTCAGCGTCACCTTCCCCCTGAATCTGGATGTCCGCAT
GAAGGCGCTCATATTCGCAGCGCTCTTTTTGATTGACGCGGTTTACTACG
AGCAGGCAAGCTTTCTAGACC

BO07468.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1893-PA 792 CG1893-RA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
scramb2-RA 1586 CG1893-RA 62..850 17..805 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3045721..3046217 627..131 2485 100 Minus
3L 28110227 3L 3044972..3045133 785..624 810 100 Minus
3L 28110227 3L 3046637..3046751 131..17 575 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:00:22 has no hits.

BO07468.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:34 Download gff for BO07468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1893-PA 1..792 17..806 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:06 Download gff for BO07468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1893-PA 1..792 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:44 Download gff for BO07468.5prime
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 62..856 17..812 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:52 Download gff for BO07468.5prime
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 62..856 17..812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:52 Download gff for BO07468.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3044973..3045131 626..784 100 <- Minus
3L 3045723..3046216 132..625 100 <- Minus
3L 3046637..3046751 17..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:44 Download gff for BO07468.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3044973..3045131 626..784 100 <- Minus
arm_3L 3045723..3046216 132..625 100 <- Minus
arm_3L 3046637..3046751 17..131 100   Minus

BO07468.complete Sequence

823 bp (823 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630798

> BO07468.complete
GAAGTTATCAGTCGACATGATGCAGATGAGCGAGTACAAGGTGCTCCCGC
AGAATGCACCGCAGGACGAGAATGGCGCAGTGGTCCTGCAGCCGCAGGCG
GCGAATGTTGGCAACAATGCCAACGGACCTGAAAACTGGATGTCGATACC
CGTGGGCATGCCCAACTGCCCGCAGGGACTGGAATACCTGACCGCTCTGG
ACCAGTTGCTCGTGTCGCAGAAGATCGAGAAACTGGAGCTGCTCACCGGC
TTCGAGACGAAGAACCGCTTCAAGGTGAAGAACTCACTGGGCCAGAATGT
GTACTTCGCGTACGAGGAGAGCGACTGCTGCACCCGCAACATGCTCGGCC
GGTCGCGCCCCTTCGAGATGAAGATACTGGACAATTTTCAGAACGAGGTG
CTCCACCTGTACCGGCCCTTCAAGTGCGACATCCTCTGCTGCTTTCCCAG
CTGCATGAACGCCGTGGAGGTGTCGGCGCCACCCGGCCAGGTGATCGGTA
GCGTTGAGCAGGTCTGCACCTTCATGCGGCCCAAGTTCAACATCAAGAAC
ACATGCGGCGATACCGTCCTGCAGATCGAGGGACCCGTCTGTCCCTGCAA
GTGCTTCAGCGATACCAACTTCAAGGTATTGAGCGCCAACAACGAGGAGA
TCGGCAAAATCAGCAAACAATGGTCCGGACTGGGAAGGGAGCTGTTCACC
GATGCGGACTACTTCAGCGTCACCTTCCCCCTGAATCTGGATGTCCGCAT
GAAGGCGCTCATATTCGCAGCGCTCTTTTTGATTGACGCGGTTTACTACG
AGCAGGCAAGCTTTCTAGACCAT

BO07468.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
scramb2-RA 792 CG1893-PA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
scramb2-RA 1586 CG1893-RA 62..850 17..805 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3045721..3046217 627..131 2485 100 Minus
3L 28110227 3L 3044972..3045133 785..624 810 100 Minus
3L 28110227 3L 3046637..3046751 131..17 575 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:19:22 has no hits.

BO07468.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:19 Download gff for BO07468.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 1..792 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:11 Download gff for BO07468.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 60..854 17..812 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:38 Download gff for BO07468.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 62..850 17..807 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:19 Download gff for BO07468.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 60..854 17..812 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:49 Download gff for BO07468.complete
Subject Subject Range Query Range Percent Splice Strand
scramb2-RA 62..850 17..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:49 Download gff for BO07468.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3044973..3045131 626..784 100 <- Minus
3L 3044847..3044869 785..807 91 <- Minus
3L 3045723..3046216 132..625 100 <- Minus
3L 3046637..3046751 17..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:38 Download gff for BO07468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3044847..3044869 785..807 91 <- Minus
arm_3L 3044973..3045131 626..784 100 <- Minus
arm_3L 3045723..3046216 132..625 100 <- Minus
arm_3L 3046637..3046751 17..131 100   Minus

BO07468.pep Sequence

Translation from 16 to 823

> BO07468.pep
MMQMSEYKVLPQNAPQDENGAVVLQPQAANVGNNANGPENWMSIPVGMPN
CPQGLEYLTALDQLLVSQKIEKLELLTGFETKNRFKVKNSLGQNVYFAYE
ESDCCTRNMLGRSRPFEMKILDNFQNEVLHLYRPFKCDILCCFPSCMNAV
EVSAPPGQVIGSVEQVCTFMRPKFNIKNTCGDTVLQIEGPVCPCKCFSDT
NFKVLSANNEEIGKISKQWSGLGRELFTDADYFSVTFPLNLDVRMKALIF
AALFLIDAVYYEQASFLDH

BO07468.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
scramb2-PA 263 CG1893-PA 1..263 1..263 1404 100 Plus
scramb1-PA 416 CG32056-PA 182..405 40..264 765 60 Plus
scramb1-PB 233 CG32056-PB 1..222 42..264 753 60.1 Plus
scramb1-PC 332 CG32056-PC 101..321 43..264 748 59.9 Plus
CG9084-PB 275 CG9084-PB 67..272 54..262 231 30.8 Plus