Clone BO07470 Report

Search the DGRC for BO07470

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptGpo-1-RA
Protein status:BO07470.pep: validated full length
Sequenced Size:2206

Clone Sequence Records

BO07470.3prime Sequence

941 bp (804 high quality bases) assembled on 2006-01-06

> BO07470.3prime
ATGGTCTAGAAAGCTTGCCAAGCCGCCTCCGGATCGGTCCACGCTGATCT
GCTTCAGATTGGCCGCCTCGTGCTTCTGCTCCTCCAGCTCGGCCATGCGC
GCAAATCGGGAGTAGGCCACGTCGCCCGTTTTGATGGCCGACATCATCTG
AAGGTATTCGTCCAGTTCCACCTGGCCGTTCATGTTGGTATCGATCTCGC
GCAGGATTTCGTGCAGCTGCTCGCCAGAGACGTCGCCATCGCCGAAGCTC
TTGAGAGCGCGACGGATATCGTTGATGGAAACGTAGCCCTTCTTGTCTTT
GTCGATCAGCTGGAAGCGCTTGATGTATGTCTGGATCTCCTCCTTGGACA
GCTTGATGGGTATGCGCTCCTTGGAGGTGCGGTTGACCGAGTGTCCCATC
TCGTTGGCCAGGAACTCAGTGGCGTGCTTAATCTGGCGCTCCTTCTCGTC
CTTGGACCAGCCCAGCTCCTCGCCCATGATGTCAACGATCACTGGCAGCG
CCTCCTGTGCTGCCTGCACATTGAGGAAGGCCAGTCGCAGGCGACGGGCG
ATCATATCGACAGCGGTACAGGCGTACTCTCGCACTCCGTACCGGATCTC
GGCATCGATGTATGGGAACTCGGGGTGGATGCGGTTACCAATGATGGGCC
AACGCTTGCCGGTCAACGAAGCCATTTTGGACACGGCGAAGGCGCGGTCA
CCGTACGACTTGGCCAGATGTTGGGCCACCTCGCACTCAAGTCCGAAGTC
CTGCACCAAACGGATGTACATGGTCGGGGTCCAGCCCTGGCCGCCTTCGA
TCTTCAGATAGGAGGTGACTGCCTCGGCGCGCTCTGGCTTAAGTTGCAGG
CCTTGATAGCCGCGTCGATGGTGTGCTCGGCCATGGCCCTGTAGGTGGTC
CACTTTTGCGCAGCGATGGTGATGAGATGGNAGGGGCTGAC

BO07470.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8256-PC 2175 l(2)k05713-RC 1351..2172 840..19 4110 100 Minus
CG8256-PB 2175 l(2)k05713-RB 1351..2172 840..19 4110 100 Minus
CG8256-PA 2175 l(2)k05713-RA 1351..2172 840..19 4110 100 Minus
CG8256-PC 2175 l(2)k05713-RC 1285..1351 905..839 335 100 Minus
CG8256-PB 2175 l(2)k05713-RB 1285..1351 905..839 335 100 Minus
CG8256-PA 2175 l(2)k05713-RA 1285..1351 905..839 335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
Gpo-1-RD 2637 CG8256-RD 1584..2507 941..19 4494 99.2 Minus
Gpo-1-RA 2433 CG8256-RA 1380..2303 941..19 4494 99.2 Minus
Gpo-1-RB 2492 CG8256-RB 1439..2362 941..19 4494 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15858186..15858894 144..851 3480 99.7 Plus
2R 25286936 2R 15857882..15858013 19..150 660 100 Plus
2R 25286936 2R 15859080..15859170 851..941 354 92.3 Plus
Blast to na_te.dros performed on 2015-02-12 07:13:51 has no hits.

BO07470.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:37 Download gff for BO07470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8256-PB 1249..2175 15..941 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:10 Download gff for BO07470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8256-PA 1249..2175 15..941 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:18 Download gff for BO07470.3prime
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RB 1439..2366 14..941 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:49 Download gff for BO07470.3prime
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RB 1439..2366 14..941 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:49 Download gff for BO07470.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15857878..15858010 14..147 98 <- Plus
2R 15858190..15858893 148..850 99 <- Plus
2R 15859080..15859170 851..941 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:18 Download gff for BO07470.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11745383..11745515 14..147 98 <- Plus
arm_2R 11745695..11746398 148..850 99 <- Plus
arm_2R 11746585..11746675 851..941 93   Plus

BO07470.5prime Sequence

904 bp (887 high quality bases) assembled on 2006-01-06

> BO07470.5prime
GAAGTTATCAGTCGACATGACCTCGCGAATGTTCAAGTTCGGCGTAACAG
CCGCTAGCGCCTGTGTTGGTTCCGTCCTGGCCTCGTACACCCTGGATCGC
TGGAACACCCCCCATGTGGTTAACAATGCCACCGTGCCGCCGAAAAGGAA
GCGCACGCTGCCCCCGCGAGCGGATCAGATCAAATCCCTGATGAGCGGCG
AGGAGTTCGACGTGCTGATCATCGGCGGAGGAGCCACGGGAGCTGGATGT
GCTCTCGACTCGGTTACAAGGGGTCTTAAGACCGCCCTGGTGGAGCTGGA
TGACTTTGCCAGCGGAACTTCCTCGAGATCCACGAAACTTATCCATGGCG
GAGTGCGATATCTGCAGAAGGCCATTTTGGGCCTAGATCTAGAGCAGTAC
CGCATGGTGAAGGAGGCGCTGGCTGAGCGCGCCACCATGCTCGAATCGGC
GCCCCACTTGACCCACCCTCTGCCCATCATGCTGCCAGTTTACACATGGT
GGCAGGTTCCTTACTACTGGGTGGGCATCAAGGCCTACGATCTGGTGGCC
GGCGATCGCAATGTGAAAAGCTCGTACTACCTCTCCAAGAAGGATGCCCT
CGAACTGTTCCCCATGCTCAAGAAGGACAAGCTGTGCGGCGCTATCGTCT
ACTATGATGGCCAGCAGGATGATGCCAGGATGTGTCTGGCGGTGGCGCTG
ACTGCCGCTCGTCACGGTGCCACTGTGTGCAATCACGTGGAGGTGAAGGA
GCTGCTGAAGAAGGACGACGGCACTGGCAAACAGGTGCTGTGCGGAGCCA
AGGTCAAGGACCATATCTCCGGCAAGGAGTTCACCGTGAAGGCCAAGTGC
ATTGTTAATGCCGCCGGTCCCTTCACGGACTCCATCCGCAAGATGGACAA
CCCC

BO07470.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8256-PC 2175 l(2)k05713-RC 1..888 17..904 4440 100 Plus
CG8256-PB 2175 l(2)k05713-RB 1..888 17..904 4440 100 Plus
CG8256-PA 2175 l(2)k05713-RA 1..888 17..904 4440 100 Plus
CG7311-PA 2019 CG7311-RA 186..222 199..235 135 94.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Gpo-1-RD 2637 CG8256-RD 332..1223 13..904 4445 99.9 Plus
Gpo-1-RA 2433 CG8256-RA 128..1019 13..904 4445 99.9 Plus
Gpo-1-RB 2492 CG8256-RB 187..1078 13..904 4445 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15859531..15859939 904..496 2045 100 Minus
2R 25286936 2R 15860375..15860531 274..118 785 100 Minus
2R 25286936 2R 15860007..15860119 495..383 565 100 Minus
2R 25286936 2R 15860195..15860305 382..272 555 100 Minus
2R 25286936 2R 15860599..15860706 120..13 525 99.1 Minus
Blast to na_te.dros performed on 2015-02-11 17:22:06 has no hits.

BO07470.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:37 Download gff for BO07470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8256-PB 1..888 17..904 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:12 Download gff for BO07470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8256-PA 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:43:25 Download gff for BO07470.5prime
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RB 178..1078 3..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:47 Download gff for BO07470.5prime
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RB 178..1078 3..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:47 Download gff for BO07470.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15860007..15860119 383..495 100 <- Minus
2R 15860195..15860304 273..382 100 <- Minus
2R 15860377..15860530 119..272 100 <- Minus
2R 15860601..15860713 3..118 95   Minus
2R 15859531..15859939 496..904 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:43:25 Download gff for BO07470.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11747036..11747444 496..904 100 <- Minus
arm_2R 11747512..11747624 383..495 100 <- Minus
arm_2R 11747700..11747809 273..382 100 <- Minus
arm_2R 11747882..11748035 119..272 100 <- Minus
arm_2R 11748106..11748218 3..118 95   Minus

BO07470.complete Sequence

2206 bp (2206 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630799

> BO07470.complete
GAAGTTATCAGTCGACATGACCTCGCGAATGTTCAAGTTCGGCGTAACAG
CCGCTAGCGCCTGTGTTGGTTCCGTCCTGGCCTCGTACACCCTGGATCGC
TGGAACACCCCCCATGTGGTTAACAATGCCACCGTGCCGCCGAAAAGGAA
GCGCACGCTGCCCCCGCGAGCGGATCAGATCAAATCCCTGATGAGCGGCG
AGGAGTTCGACGTGCTGATCATCGGCGGAGGAGCCACGGGAGCTGGATGT
GCTCTCGACTCGGTTACAAGGGGTCTTAAGACCGCCCTGGTGGAGCTGGA
TGACTTTGCCAGCGGAACTTCCTCGAGATCCACGAAACTTATCCATGGCG
GAGTGCGATATCTGCAGAAGGCCATTTTGGGCCTAGATCTAGAGCAGTAC
CGCATGGTGAAGGAGGCGCTGGCTGAGCGCGCCACCATGCTCGAATCGGC
GCCCCACTTGACCCACCCTCTGCCCATCATGCTGCCAGTTTACACATGGT
GGCAGGTTCCTTACTACTGGGTGGGCATCAAGGCCTACGATCTGGTGGCC
GGCGATCGCAATGTGAAAAGCTCGTACTACCTCTCCAAGAAGGATGCCCT
CGAACTGTTCCCCATGCTCAAGAAGGACAAGCTGTGCGGCGCTATCGTCT
ACTATGATGGCCAGCAGGATGATGCCAGGATGTGTCTGGCGGTGGCGCTG
ACTGCCGCTCGTCACGGTGCCACTGTGTGCAATCACGTGGAGGTGAAGGA
GCTGCTGAAGAAGGACGACGGCACTGGCAAACAGGTGCTGTGCGGAGCCA
AGGTCAAGGACCATATCTCCGGCAAGGAGTTCACCGTGAAGGCCAAGTGC
ATTGTTAATGCCGCCGGTCCCTTCACGGACTCCATCCGCAAGATGGACAA
CCCCACGGTGAAGAGCATCTGCTGCCCCAGTTCCGGAGTTCATATCGTAC
TGCCTGGCTACTATAGCCCCGATCAGATGGGTCTGCTGGATCCCTCCACT
TCCGACGGCCGCGTCATCTTCTTCCTGCCCTGGCAGAGGCAGACGATTGC
CGGCACCACCGACCTGCCCTGCGAAATCACCCACAATCCAACGCCCACCG
AGGACGAGATCCAGTTTATCCTCAACGAGATCAAGAACTATCTGAATGCG
GATGTGGAGGTGCGCCGTGGCGATGTGCTCTCCGCATGGAGCGGCATCCG
CCCTCTGGTCTCCGATCCCAACAAGGACGACACCCAGTCCCTGGCCCGCA
ACCACATCGTCCACGTCAGCCCCTCCAATCTCATCACCATCGCTGGCGGC
AAGTGGACCACCTACAGGGCCATGGCCGAGCACACCATCGACGCGGCTAT
CAAGGCCTGCAACTTAAAGCCAGAGCGCGCCGAGGCAGTCACCTCCTATC
TGAAGATCGAAGGCGGCCAGGGCTGGACCCCGACCATGTACATCCGTTTG
GTGCAGGACTTCGGACTTGAGTGCGAGGTGGCCCAACATCTGGCCAAGTC
GTACGGTGACCGCGCCTTCGCCGTGTCCAAAATGGCTTCGTTGACCGGCA
AGCGTTGGCCCATCATTGGTAACCGCATCCACCCCGAGTTCCCATACATC
GATGCCGAGATCCGGTACGGAGTGCGAGAGTACGCCTGTACCGCTGTCGA
TATGATCGCCCGTCGCCTGCGACTGGCCTTCCTCAATGTGCAGGCAGCAC
AGGAGGCGCTGCCAGTGATCGTTGACATCATGGGCGAGGAGCTGGGCTGG
TCCAAGGACGAGAAGGAGCGCCAGATTAAGCACGCCACTGAGTTCCTGGC
CAACGAGATGGGACACTCGGTCAACCGCACCTCCAAGGAGCGCATACCCA
TCAAGCTGTCCAAGGAGGAGATCCAGACATACATCAAGCGCTTCCAGCTG
ATCGACAAAGACAAGAAGGGCTACGTTTCCATCAACGATATCCGTCGCGC
TCTCAAGAGCTTCGGCGATGGCGACGTCTCTGGCGAGCAGCTGCACGAAA
TCCTGCGCGAGATCGATACCAACATGAACGGCCAGGTGGAACTGGACGAA
TACCTTCAGATGATGTCGGCCATCAAAACGGGCGACGTGGCCTACTCCCG
ATTTGCGCGCATGGCCGAGCTGGAGGAGCAGAAGCACGAGGCGGCCAATC
TGAAGCAGATCAGCGTGGACCGATCCGGAGGCGGCTTGGCAAGCTTTCTA
GACCAT

BO07470.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
Gpo-1-RD 2175 CG8256-PD 1..2172 17..2188 10860 100 Plus
Gpo-1-RA 2175 CG8256-PA 1..2172 17..2188 10860 100 Plus
Gpo-1-RB 2175 CG8256-PB 1..2172 17..2188 10860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
Gpo-1-RD 2637 CG8256-RD 332..2507 13..2188 10865 100 Plus
Gpo-1-RA 2433 CG8256-RA 128..2303 13..2188 10865 100 Plus
Gpo-1-RB 2492 CG8256-RB 187..2362 13..2188 10865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15859080..15859939 1355..496 4300 100 Minus
2R 25286936 2R 15858186..15858894 2063..1355 3530 99.9 Minus
2R 25286936 2R 15860375..15860531 274..118 785 100 Minus
2R 25286936 2R 15857882..15858013 2188..2057 660 100 Minus
2R 25286936 2R 15860007..15860119 495..383 565 100 Minus
2R 25286936 2R 15860195..15860305 382..272 555 100 Minus
2R 25286936 2R 15860599..15860706 120..13 525 99.1 Minus
Blast to na_te.dros performed on 2014-11-27 13:27:40 has no hits.

BO07470.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:03 Download gff for BO07470.complete
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RA 1..2175 17..2192 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:03 Download gff for BO07470.complete
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RA 350..2538 3..2193 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:51 Download gff for BO07470.complete
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RB 191..2362 17..2190 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:04 Download gff for BO07470.complete
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RA 350..2538 3..2193 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:52 Download gff for BO07470.complete
Subject Subject Range Query Range Percent Splice Strand
Gpo-1-RB 191..2362 17..2190 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:52 Download gff for BO07470.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15857880..15858010 2060..2190 98 <- Minus
2R 15858190..15858893 1356..2059 100 <- Minus
2R 15859080..15859939 496..1355 100 <- Minus
2R 15860007..15860119 383..495 100 <- Minus
2R 15860195..15860304 273..382 100 <- Minus
2R 15860377..15860530 119..272 100 <- Minus
2R 15860601..15860702 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:51 Download gff for BO07470.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11745385..11745515 2060..2190 98 <- Minus
arm_2R 11745695..11746398 1356..2059 100 <- Minus
arm_2R 11746585..11747444 496..1355 100 <- Minus
arm_2R 11747512..11747624 383..495 100 <- Minus
arm_2R 11747700..11747809 273..382 100 <- Minus
arm_2R 11747882..11748035 119..272 100 <- Minus
arm_2R 11748106..11748207 17..118 100   Minus

BO07470.pep Sequence

Translation from 16 to 2206

> BO07470.pep
MTSRMFKFGVTAASACVGSVLASYTLDRWNTPHVVNNATVPPKRKRTLPP
RADQIKSLMSGEEFDVLIIGGGATGAGCALDSVTRGLKTALVELDDFASG
TSSRSTKLIHGGVRYLQKAILGLDLEQYRMVKEALAERATMLESAPHLTH
PLPIMLPVYTWWQVPYYWVGIKAYDLVAGDRNVKSSYYLSKKDALELFPM
LKKDKLCGAIVYYDGQQDDARMCLAVALTAARHGATVCNHVEVKELLKKD
DGTGKQVLCGAKVKDHISGKEFTVKAKCIVNAAGPFTDSIRKMDNPTVKS
ICCPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPWQRQTIAGTTDL
PCEITHNPTPTEDEIQFILNEIKNYLNADVEVRRGDVLSAWSGIRPLVSD
PNKDDTQSLARNHIVHVSPSNLITIAGGKWTTYRAMAEHTIDAAIKACNL
KPERAEAVTSYLKIEGGQGWTPTMYIRLVQDFGLECEVAQHLAKSYGDRA
FAVSKMASLTGKRWPIIGNRIHPEFPYIDAEIRYGVREYACTAVDMIARR
LRLAFLNVQAAQEALPVIVDIMGEELGWSKDEKERQIKHATEFLANEMGH
SVNRTSKERIPIKLSKEEIQTYIKRFQLIDKDKKGYVSINDIRRALKSFG
DGDVSGEQLHEILREIDTNMNGQVELDEYLQMMSAIKTGDVAYSRFARMA
ELEEQKHEAANLKQISVDRSGGGLASFLDH

BO07470.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
Gpo-1-PD 724 CG8256-PD 1..724 1..724 3768 100 Plus
Gpo-1-PA 724 CG8256-PA 1..724 1..724 3768 100 Plus
Gpo-1-PB 724 CG8256-PB 1..724 1..724 3768 100 Plus
Gpo-1-PC 724 CG8256-PC 1..724 1..724 3768 100 Plus
CG2137-PA 713 CG2137-PA 29..713 37..724 1659 45.8 Plus