Clone BO07472 Report

Search the DGRC for BO07472

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:72
Vector:pDNR-Dual
Associated Gene/Transcripthebe-RB
Protein status:BO07472.pep: validated full length
Sequenced Size:1402

Clone Sequence Records

BO07472.3prime Sequence

883 bp (874 high quality bases) assembled on 2006-01-06

> BO07472.3prime
ATGGTCTAGAAAGCTTGCTTCCGCCCGCAGTACGGGCGTCACCTGGACCT
CGTTCTGATCATCGCTCTGGATGTCGAACTTCAGCTTGGTCAGCTCCTTG
AGCTCGCCATTCGATTCGGCGGGCACCTCGCTGACCACCTTCACGGTATC
CGGATACTTGTTCTCCCCGCTGCCCAATTCCTGCGAGAAGCTGACCACGG
TCTTGGGTTCGTAGTTCACTCCCAGGGCGCCACTGGGATCCGGAGTGGGT
ATGCTGGGTCCATCGCTACTCTGTCCGTTGGTGTGCGAAATGGTAATGGC
ATCCGCCTCCTCCTTATGACCATTGGTGGCAGGAGCAGCCTCCTCTTCCT
TAAGGCCATTGGTGGCAGGAACAGCCTTCTCCTCCTCCTTCTGGCCATTT
TGCACGGGAGCAGCTGGCTCCACCACCTCCACCTTGGCTTCCACGGCTGC
GGGAGCTTGAGTGGGCTCCTCTACCACGGCCTCCGCCTTTCGTTCGGCTG
CCACTGGCTCTGGAGTAGGTTCTGGAACTGGCTCAGGGGTGGCTTCCACC
TCCGCCTCATCCTCTCCTGCCACTGCCTGGTTAACTTGCTCAATGGCCTT
GGCCACTTCTTCGGGTCCTACGTCAGAGTTCTTTGGCTCCTCACTGTGTC
CATTGCTTACAGGGTCCTCTGGTTCGGGTTTAGTGATCAGGGCAGAGGTG
GTTACAGCGGCCACCTGAGGCTGTACCTCCACCTTCTCCTCCTCCTCCAC
CTTCTCGGCCACGGGAGCGGGAATCTCGAGGGCGGGCACAATGGCCGGAC
TGGCCATGGTCTCCACGAACGAGGTGCGATTGGGCGAGTCCGGCGAGATC
ATAACGTGCGTGAAGTAGCCGCTGCGGCGGCTC

BO07472.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1623-PB 1371 CG1623-RB 504..1368 883..19 4300 99.8 Minus
CG1623-PD 1371 CG1623-RD 504..1368 883..19 4300 99.8 Minus
CG1623-PA 1371 CG1623-RA 504..1368 883..19 4300 99.8 Minus
CG1623-PC 1371 CG1623-RC 504..1368 883..19 4300 99.8 Minus
CG1623-PE 1371 CG1623-RE 504..1368 883..19 4300 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
hebe-RF 1820 CG1623-RF 630..1494 883..19 4310 99.9 Minus
hebe-RE 1825 CG1623-RE 635..1499 883..19 4310 99.9 Minus
hebe-RD 1956 CG1623-RD 766..1630 883..19 4310 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9828430..9829294 19..883 4310 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 15:36:34 has no hits.

BO07472.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:41 Download gff for BO07472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1623-PB 504..1371 18..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:17 Download gff for BO07472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1623-PE 504..1371 18..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:06:46 Download gff for BO07472.3prime
Subject Subject Range Query Range Percent Splice Strand
hebe-RD 766..1630 19..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:22 Download gff for BO07472.3prime
Subject Subject Range Query Range Percent Splice Strand
hebe-RD 766..1630 19..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:22 Download gff for BO07472.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9828430..9829294 19..883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:06:46 Download gff for BO07472.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5715935..5716799 19..883 99   Plus

BO07472.5prime Sequence

798 bp (791 high quality bases) assembled on 2006-01-06

> BO07472.5prime
GAAGTTATCAGTCGACATGGCCGAGACAATCAACAACAAGCCGAGCATAC
AGATCCGCAGCGGACTGCCCTCGCCTCTGCCGGACAAGAGTCCCTCGCCG
GCCACCAAGCTGCTGATCAGCCACGGCAAGCCCAACTTCACCATCGCCAA
GTCGCCGAAGATCGACGAGAACGGAAACGGAAACCCACTGTCCGCCCAGC
CCAGCGCCAACAACAACTACAACGCCTACAAGAGCGCCAACAGCAGCGTG
GCCAACAGCCAGAAGTTCATAGTGGGCACCAAGTTCAATGGGGTCTTCAA
GCCATCGAATGCCGCGGCCACTTGGGCAACCAATGGAAGCACCAATGGCA
ATGGCACCGCGGAGTCGGAGAACGAGGTGGCCAAGGTCGTGCTGCGACGA
CCCAAGGTGGCGGACTCACCCCCACCCGCCGAGGGCGAGGACGAGAACGT
GCCGGAGTTCATCAGGCGCCAGCGACTCATCCAGGAGCGTCTGGCCAAGG
AGAACGTGCTGGACTTTGAGAGCCGGCGCAGCGGCTACTTCACGCACGTT
ATGATCTCGCCGGACTCGCCCAATCGCACCTCGTTCGTGGAGACCATGGC
CAGTCCGGCCATTGTGCCCGCCCTCGAGATTCCCGCTCCCGTGGCCGAGA
AGGTGGAGGAGGAGGAGAAGGTGGAGGTACAGCCTCAGGTGGCCGCTGTA
ACCACCTCTGCCCTGATCACTAAACCCGAACCAGAGGACCCTGTAAGCAA
TGGACACAGTGAGGAGCCAAAGAACTCTGACGTAGGACCCGAAGAAGT

BO07472.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1623-PB 1371 CG1623-RB 1..782 17..798 3910 100 Plus
CG1623-PD 1371 CG1623-RD 1..782 17..798 3910 100 Plus
CG1623-PA 1371 CG1623-RA 1..782 17..798 3910 100 Plus
CG1623-PC 1371 CG1623-RC 1..782 17..798 3910 100 Plus
CG1623-PE 1371 CG1623-RE 1..782 17..798 3910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
hebe-RF 1820 CG1623-RF 124..908 14..798 3925 100 Plus
hebe-RE 1825 CG1623-RE 129..913 14..798 3925 100 Plus
hebe-RD 1956 CG1623-RD 260..1044 14..798 3925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9829016..9829800 798..14 3925 100 Minus
Blast to na_te.dros performed 2015-02-11 03:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6747..6912 116..281 154 58 Plus

BO07472.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:42 Download gff for BO07472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1623-PB 1..782 17..798 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:19 Download gff for BO07472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1623-PE 1..782 17..798 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:56:01 Download gff for BO07472.5prime
Subject Subject Range Query Range Percent Splice Strand
hebe-RD 254..1044 9..798 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:44:13 Download gff for BO07472.5prime
Subject Subject Range Query Range Percent Splice Strand
hebe-RD 254..1044 9..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:44:13 Download gff for BO07472.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9829016..9829806 9..798 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:56:01 Download gff for BO07472.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5716521..5717311 9..798 99   Minus

BO07472.complete Sequence

1402 bp (1402 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630800

> BO07472.complete
GAAGTTATCAGTCGACATGGCCGAGACAATCAACAACAAGCCGAGCATAC
AGATCCGCAGCGGACTGCCCTCGCCTCTGCCGGACAAGAGTCCCTCGCCG
GCCACCAAGCTGCTGATCAGCCACGGCAAGCCCAACTTCACCATCGCCAA
GTCGCCGAAGATCGACGAGAACGGAAACGGAAACCCACTGTCCGCCCAGC
CCAGCGCCAACAACAACTACAACGCCTACAAGAGCGCCAACAGCAGCGTG
GCCAACAGCCAGAAGTTCATAGTGGGCACCAAGTTCAATGGGGTCTTCAA
GCCATCGAATGCCGCGGCCACTTGGGCAACCAATGGAAGCACCAATGGCA
ATGGCACCGCGGAGTCGGAGAACGAGGTGGCCAAGGTCGTGCTGCGACGA
CCCAAGGTGGCGGACTCACCCCCACCCGCCGAGGGCGAGGACGAGAACGT
GCCGGAGTTCATCAGGCGCCAGCGACTCATCCAGGAGCGTCTGGCCAAGG
AGAACGTGCTGGACTTTGAGAGCCGGCGCAGCGGCTACTTCACGCACGTT
ATGATCTCGCCGGACTCGCCCAATCGCACCTCGTTCGTGGAGACCATGGC
CAGTCCGGCCATTGTGCCCGCCCTCGAGATTCCCGCTCCCGTGGCCGAGA
AGGTGGAGGAGGAGGAGAAGGTGGAGGTACAGCCTCAGGTGGCCGCTGTA
ACCACCTCTGCCCTGATCACTAAACCCGAACCAGAGGACCCTGTAAGCAA
TGGACACAGTGAGGAGCCAAAGAACTCTGACGTAGGACCCGAAGAAGTGG
CCAAGGCCATTGAGCAAGTTAACCAGGCAGTGGCAGGAGAGGATGAGGCG
GAGGTGGAAGCCACCCCTGAGCCAGTTCCAGAACCTACTCCAGAGCCAGT
GGCAGCCGAACGAAAGGCGGAGGCCGTGGTAGAGGAGCCCACTCAAGCTC
CCGCAGCCGTGGAAGCCAAGGTGGAGGTGGTGGAGCCAGCTGCTCCCGTG
CAAAATGGCCAGAAGGAGGAGGAGAAGGCTGTTCCTGCCACCAATGGCCT
TAAGGAAGAGGAGGCTGCTCCTGCCACCAATGGTCATAAGGAGGAGGCGG
ATGCCATTACCATTTCGCACACCAACGGACAGAGTAGCGATGGACCCAGC
ATACCCACTCCGGATCCCAGTGGCGCCCTGGGAGTGAACTACGAACCCAA
GACCGTGGTCAGCTTCTCGCAGGAATTGGGCAGCGGGGAGAACAAGTATC
CGGATACCGTGAAGGTGGTCAGCGAGGTGCCCGCCGAATCGAATGGCGAG
CTCAAGGAGCTGACCAAGCTGAAGTTCGACATCCAGAGCGATGATCAGAA
CGAGGTCCAGGTGACGCCCGTACTGCGGGCGGAAGCAAGCTTTCTAGACC
AT

BO07472.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
hebe-RF 1371 CG1623-PF 1..1368 17..1384 6840 100 Plus
hebe-RE 1371 CG1623-PE 1..1368 17..1384 6840 100 Plus
hebe-RD 1371 CG1623-PD 1..1368 17..1384 6840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
hebe-RF 1820 CG1623-RF 124..1494 14..1384 6855 100 Plus
hebe-RE 1825 CG1623-RE 129..1499 14..1384 6855 100 Plus
hebe-RD 1956 CG1623-RD 260..1630 14..1384 6855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9828430..9829800 1384..14 6855 100 Minus
Blast to na_te.dros performed 2014-11-27 13:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6747..6912 116..281 154 58 Plus

BO07472.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:20 Download gff for BO07472.complete
Subject Subject Range Query Range Percent Splice Strand
CG1623-RE 1..1371 17..1385 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:12 Download gff for BO07472.complete
Subject Subject Range Query Range Percent Splice Strand
CG1623-RE 96..1472 9..1384 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:27 Download gff for BO07472.complete
Subject Subject Range Query Range Percent Splice Strand
hebe-RD 263..1630 17..1386 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:20 Download gff for BO07472.complete
Subject Subject Range Query Range Percent Splice Strand
CG1623-RE 96..1472 9..1384 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:29 Download gff for BO07472.complete
Subject Subject Range Query Range Percent Splice Strand
hebe-RD 263..1630 17..1386 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:29 Download gff for BO07472.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9828428..9829797 17..1386 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:27 Download gff for BO07472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5715933..5717302 17..1386 99   Minus

BO07472.pep Sequence

Translation from 16 to 1402

> BO07472.pep
MAETINNKPSIQIRSGLPSPLPDKSPSPATKLLISHGKPNFTIAKSPKID
ENGNGNPLSAQPSANNNYNAYKSANSSVANSQKFIVGTKFNGVFKPSNAA
ATWATNGSTNGNGTAESENEVAKVVLRRPKVADSPPPAEGEDENVPEFIR
RQRLIQERLAKENVLDFESRRSGYFTHVMISPDSPNRTSFVETMASPAIV
PALEIPAPVAEKVEEEEKVEVQPQVAAVTTSALITKPEPEDPVSNGHSEE
PKNSDVGPEEVAKAIEQVNQAVAGEDEAEVEATPEPVPEPTPEPVAAERK
AEAVVEEPTQAPAAVEAKVEVVEPAAPVQNGQKEEEKAVPATNGLKEEEA
APATNGHKEEADAITISHTNGQSSDGPSIPTPDPSGALGVNYEPKTVVSF
SQELGSGENKYPDTVKVVSEVPAESNGELKELTKLKFDIQSDDQNEVQVT
PVLRAEASFLDH

BO07472.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
hebe-PF 456 CG1623-PF 1..456 1..456 2320 100 Plus
hebe-PE 456 CG1623-PE 1..456 1..456 2320 100 Plus
hebe-PD 456 CG1623-PD 1..456 1..456 2320 100 Plus
hebe-PB 456 CG1623-PB 1..456 1..456 2320 100 Plus