Clone Sequence Records
BO07472.3prime Sequence
883 bp (874 high quality bases) assembled on 2006-01-06
> BO07472.3prime
ATGGTCTAGAAAGCTTGCTTCCGCCCGCAGTACGGGCGTCACCTGGACCT
CGTTCTGATCATCGCTCTGGATGTCGAACTTCAGCTTGGTCAGCTCCTTG
AGCTCGCCATTCGATTCGGCGGGCACCTCGCTGACCACCTTCACGGTATC
CGGATACTTGTTCTCCCCGCTGCCCAATTCCTGCGAGAAGCTGACCACGG
TCTTGGGTTCGTAGTTCACTCCCAGGGCGCCACTGGGATCCGGAGTGGGT
ATGCTGGGTCCATCGCTACTCTGTCCGTTGGTGTGCGAAATGGTAATGGC
ATCCGCCTCCTCCTTATGACCATTGGTGGCAGGAGCAGCCTCCTCTTCCT
TAAGGCCATTGGTGGCAGGAACAGCCTTCTCCTCCTCCTTCTGGCCATTT
TGCACGGGAGCAGCTGGCTCCACCACCTCCACCTTGGCTTCCACGGCTGC
GGGAGCTTGAGTGGGCTCCTCTACCACGGCCTCCGCCTTTCGTTCGGCTG
CCACTGGCTCTGGAGTAGGTTCTGGAACTGGCTCAGGGGTGGCTTCCACC
TCCGCCTCATCCTCTCCTGCCACTGCCTGGTTAACTTGCTCAATGGCCTT
GGCCACTTCTTCGGGTCCTACGTCAGAGTTCTTTGGCTCCTCACTGTGTC
CATTGCTTACAGGGTCCTCTGGTTCGGGTTTAGTGATCAGGGCAGAGGTG
GTTACAGCGGCCACCTGAGGCTGTACCTCCACCTTCTCCTCCTCCTCCAC
CTTCTCGGCCACGGGAGCGGGAATCTCGAGGGCGGGCACAATGGCCGGAC
TGGCCATGGTCTCCACGAACGAGGTGCGATTGGGCGAGTCCGGCGAGATC
ATAACGTGCGTGAAGTAGCCGCTGCGGCGGCTC
BO07472.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1623-PB | 1371 | CG1623-RB | 504..1368 | 883..19 | 4300 | 99.8 | Minus |
CG1623-PD | 1371 | CG1623-RD | 504..1368 | 883..19 | 4300 | 99.8 | Minus |
CG1623-PA | 1371 | CG1623-RA | 504..1368 | 883..19 | 4300 | 99.8 | Minus |
CG1623-PC | 1371 | CG1623-RC | 504..1368 | 883..19 | 4300 | 99.8 | Minus |
CG1623-PE | 1371 | CG1623-RE | 504..1368 | 883..19 | 4300 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hebe-RF | 1820 | CG1623-RF | 630..1494 | 883..19 | 4310 | 99.9 | Minus |
hebe-RE | 1825 | CG1623-RE | 635..1499 | 883..19 | 4310 | 99.9 | Minus |
hebe-RD | 1956 | CG1623-RD | 766..1630 | 883..19 | 4310 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9828430..9829294 | 19..883 | 4310 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:36:34 has no hits.
BO07472.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:41 Download gff for
BO07472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1623-PB | 504..1371 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:17 Download gff for
BO07472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1623-PE | 504..1371 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:06:46 Download gff for
BO07472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hebe-RD | 766..1630 | 19..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:22 Download gff for
BO07472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hebe-RD | 766..1630 | 19..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:22 Download gff for
BO07472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9828430..9829294 | 19..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:06:46 Download gff for
BO07472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5715935..5716799 | 19..883 | 99 | | Plus |
BO07472.5prime Sequence
798 bp (791 high quality bases) assembled on 2006-01-06
> BO07472.5prime
GAAGTTATCAGTCGACATGGCCGAGACAATCAACAACAAGCCGAGCATAC
AGATCCGCAGCGGACTGCCCTCGCCTCTGCCGGACAAGAGTCCCTCGCCG
GCCACCAAGCTGCTGATCAGCCACGGCAAGCCCAACTTCACCATCGCCAA
GTCGCCGAAGATCGACGAGAACGGAAACGGAAACCCACTGTCCGCCCAGC
CCAGCGCCAACAACAACTACAACGCCTACAAGAGCGCCAACAGCAGCGTG
GCCAACAGCCAGAAGTTCATAGTGGGCACCAAGTTCAATGGGGTCTTCAA
GCCATCGAATGCCGCGGCCACTTGGGCAACCAATGGAAGCACCAATGGCA
ATGGCACCGCGGAGTCGGAGAACGAGGTGGCCAAGGTCGTGCTGCGACGA
CCCAAGGTGGCGGACTCACCCCCACCCGCCGAGGGCGAGGACGAGAACGT
GCCGGAGTTCATCAGGCGCCAGCGACTCATCCAGGAGCGTCTGGCCAAGG
AGAACGTGCTGGACTTTGAGAGCCGGCGCAGCGGCTACTTCACGCACGTT
ATGATCTCGCCGGACTCGCCCAATCGCACCTCGTTCGTGGAGACCATGGC
CAGTCCGGCCATTGTGCCCGCCCTCGAGATTCCCGCTCCCGTGGCCGAGA
AGGTGGAGGAGGAGGAGAAGGTGGAGGTACAGCCTCAGGTGGCCGCTGTA
ACCACCTCTGCCCTGATCACTAAACCCGAACCAGAGGACCCTGTAAGCAA
TGGACACAGTGAGGAGCCAAAGAACTCTGACGTAGGACCCGAAGAAGT
BO07472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1623-PB | 1371 | CG1623-RB | 1..782 | 17..798 | 3910 | 100 | Plus |
CG1623-PD | 1371 | CG1623-RD | 1..782 | 17..798 | 3910 | 100 | Plus |
CG1623-PA | 1371 | CG1623-RA | 1..782 | 17..798 | 3910 | 100 | Plus |
CG1623-PC | 1371 | CG1623-RC | 1..782 | 17..798 | 3910 | 100 | Plus |
CG1623-PE | 1371 | CG1623-RE | 1..782 | 17..798 | 3910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hebe-RF | 1820 | CG1623-RF | 124..908 | 14..798 | 3925 | 100 | Plus |
hebe-RE | 1825 | CG1623-RE | 129..913 | 14..798 | 3925 | 100 | Plus |
hebe-RD | 1956 | CG1623-RD | 260..1044 | 14..798 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:42:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9829016..9829800 | 798..14 | 3925 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 03:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6912 | 116..281 | 154 | 58 | Plus |
BO07472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:42 Download gff for
BO07472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1623-PB | 1..782 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:19 Download gff for
BO07472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1623-PE | 1..782 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:56:01 Download gff for
BO07472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hebe-RD | 254..1044 | 9..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:44:13 Download gff for
BO07472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hebe-RD | 254..1044 | 9..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:44:13 Download gff for
BO07472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9829016..9829806 | 9..798 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:56:01 Download gff for
BO07472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5716521..5717311 | 9..798 | 99 | | Minus |
BO07472.complete Sequence
1402 bp (1402 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630800
> BO07472.complete
GAAGTTATCAGTCGACATGGCCGAGACAATCAACAACAAGCCGAGCATAC
AGATCCGCAGCGGACTGCCCTCGCCTCTGCCGGACAAGAGTCCCTCGCCG
GCCACCAAGCTGCTGATCAGCCACGGCAAGCCCAACTTCACCATCGCCAA
GTCGCCGAAGATCGACGAGAACGGAAACGGAAACCCACTGTCCGCCCAGC
CCAGCGCCAACAACAACTACAACGCCTACAAGAGCGCCAACAGCAGCGTG
GCCAACAGCCAGAAGTTCATAGTGGGCACCAAGTTCAATGGGGTCTTCAA
GCCATCGAATGCCGCGGCCACTTGGGCAACCAATGGAAGCACCAATGGCA
ATGGCACCGCGGAGTCGGAGAACGAGGTGGCCAAGGTCGTGCTGCGACGA
CCCAAGGTGGCGGACTCACCCCCACCCGCCGAGGGCGAGGACGAGAACGT
GCCGGAGTTCATCAGGCGCCAGCGACTCATCCAGGAGCGTCTGGCCAAGG
AGAACGTGCTGGACTTTGAGAGCCGGCGCAGCGGCTACTTCACGCACGTT
ATGATCTCGCCGGACTCGCCCAATCGCACCTCGTTCGTGGAGACCATGGC
CAGTCCGGCCATTGTGCCCGCCCTCGAGATTCCCGCTCCCGTGGCCGAGA
AGGTGGAGGAGGAGGAGAAGGTGGAGGTACAGCCTCAGGTGGCCGCTGTA
ACCACCTCTGCCCTGATCACTAAACCCGAACCAGAGGACCCTGTAAGCAA
TGGACACAGTGAGGAGCCAAAGAACTCTGACGTAGGACCCGAAGAAGTGG
CCAAGGCCATTGAGCAAGTTAACCAGGCAGTGGCAGGAGAGGATGAGGCG
GAGGTGGAAGCCACCCCTGAGCCAGTTCCAGAACCTACTCCAGAGCCAGT
GGCAGCCGAACGAAAGGCGGAGGCCGTGGTAGAGGAGCCCACTCAAGCTC
CCGCAGCCGTGGAAGCCAAGGTGGAGGTGGTGGAGCCAGCTGCTCCCGTG
CAAAATGGCCAGAAGGAGGAGGAGAAGGCTGTTCCTGCCACCAATGGCCT
TAAGGAAGAGGAGGCTGCTCCTGCCACCAATGGTCATAAGGAGGAGGCGG
ATGCCATTACCATTTCGCACACCAACGGACAGAGTAGCGATGGACCCAGC
ATACCCACTCCGGATCCCAGTGGCGCCCTGGGAGTGAACTACGAACCCAA
GACCGTGGTCAGCTTCTCGCAGGAATTGGGCAGCGGGGAGAACAAGTATC
CGGATACCGTGAAGGTGGTCAGCGAGGTGCCCGCCGAATCGAATGGCGAG
CTCAAGGAGCTGACCAAGCTGAAGTTCGACATCCAGAGCGATGATCAGAA
CGAGGTCCAGGTGACGCCCGTACTGCGGGCGGAAGCAAGCTTTCTAGACC
AT
BO07472.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hebe-RF | 1371 | CG1623-PF | 1..1368 | 17..1384 | 6840 | 100 | Plus |
hebe-RE | 1371 | CG1623-PE | 1..1368 | 17..1384 | 6840 | 100 | Plus |
hebe-RD | 1371 | CG1623-PD | 1..1368 | 17..1384 | 6840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hebe-RF | 1820 | CG1623-RF | 124..1494 | 14..1384 | 6855 | 100 | Plus |
hebe-RE | 1825 | CG1623-RE | 129..1499 | 14..1384 | 6855 | 100 | Plus |
hebe-RD | 1956 | CG1623-RD | 260..1630 | 14..1384 | 6855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9828430..9829800 | 1384..14 | 6855 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6912 | 116..281 | 154 | 58 | Plus |
BO07472.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:20 Download gff for
BO07472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1623-RE | 1..1371 | 17..1385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:12 Download gff for
BO07472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1623-RE | 96..1472 | 9..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:27 Download gff for
BO07472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hebe-RD | 263..1630 | 17..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:20 Download gff for
BO07472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1623-RE | 96..1472 | 9..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:29 Download gff for
BO07472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hebe-RD | 263..1630 | 17..1386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:29 Download gff for
BO07472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9828428..9829797 | 17..1386 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:27 Download gff for
BO07472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5715933..5717302 | 17..1386 | 99 | | Minus |
BO07472.pep Sequence
Translation from 16 to 1402
> BO07472.pep
MAETINNKPSIQIRSGLPSPLPDKSPSPATKLLISHGKPNFTIAKSPKID
ENGNGNPLSAQPSANNNYNAYKSANSSVANSQKFIVGTKFNGVFKPSNAA
ATWATNGSTNGNGTAESENEVAKVVLRRPKVADSPPPAEGEDENVPEFIR
RQRLIQERLAKENVLDFESRRSGYFTHVMISPDSPNRTSFVETMASPAIV
PALEIPAPVAEKVEEEEKVEVQPQVAAVTTSALITKPEPEDPVSNGHSEE
PKNSDVGPEEVAKAIEQVNQAVAGEDEAEVEATPEPVPEPTPEPVAAERK
AEAVVEEPTQAPAAVEAKVEVVEPAAPVQNGQKEEEKAVPATNGLKEEEA
APATNGHKEEADAITISHTNGQSSDGPSIPTPDPSGALGVNYEPKTVVSF
SQELGSGENKYPDTVKVVSEVPAESNGELKELTKLKFDIQSDDQNEVQVT
PVLRAEASFLDH
BO07472.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hebe-PF | 456 | CG1623-PF | 1..456 | 1..456 | 2320 | 100 | Plus |
hebe-PE | 456 | CG1623-PE | 1..456 | 1..456 | 2320 | 100 | Plus |
hebe-PD | 456 | CG1623-PD | 1..456 | 1..456 | 2320 | 100 | Plus |
hebe-PB | 456 | CG1623-PB | 1..456 | 1..456 | 2320 | 100 | Plus |