Clone Sequence Records
BO07473.3prime Sequence
934 bp (798 high quality bases) assembled on 2006-01-06
> BO07473.3prime
ATGGTCTAGAAAGCTTGCGTACTTCTTTAGTTGTTCGTAGGTAATAAAAA
ATATGATATTCCACGGGCCCATCCTCACCCAGGTGGGAATGAAACCTTTG
TACAGGGCGGGTAGACCTTCGTTCCTGATAGTCTGTACAGCACAGTCTAG
GCTGCCGCTATACAGCTTTGGTGTGGCTGCTGCCGTGACCACTCCATTCA
TTGTTATGCTAACGGGACGCTGGTTCATCAGGCGCGTCCGGATTACATCA
ATAGGCGTTGAGGCAATGGCACTGCCTAGACTGGCAATAAAGCTCGAGAT
GAAATGATTGCCAACGTGATCTCCGAAGGCATTCATTAACTGCAGCTTGC
AAAAGTCGTAGACGGGCAGCTCAACGGAGGCGATAACTACGGCACGCTGA
GCCGTCGGACCCACACCACGCCACAGTCCACGAACGCCCTCGTATTTGTA
GATCTCACCGAAGCAGCCCAGCAGGCCCTTGTGCTGTCCCTTCCCATGCA
CCTGCATTCGCACTTTCAGCACGTCCGTGGGGTTAGCAATGGCCGAAGAG
ATCGCTCCCGCCGCCGCCGCGCACAAAATATTGCTCCACACACGCTCGCT
GCCGTCCTCGTTGATCAGCAAGCCGCGTTCGTTGGCCAGCTTCTTCAGGG
TGTAGTAGGTTCCAAACTTGATGGTGCCATAGGTCGCTTGTCTCAAAACT
GCTGGCCAAATACCGGAATAGAGGGCCCTCAGCCCCTCCTCGCGGGAGAT
TTTTACAAAGGCATCGGTCATGCCGCGATATCGCAGCTGCGAGAACGATT
GGTCGATTTTCTGACCTTGGATTTGGAGGCGCGTCTTCGTCGTGTCGATA
GGAAAGGTGCCAAATTCCGCCGTGATTGAGGCGACTCCGCCGTTAACGAA
GGGCCGCCAATCCTCACTTCACCCATGTCGACTG
BO07473.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7314-PA | 912 | Bmcp-RA | 14..909 | 914..19 | 4455 | 99.8 | Minus |
CG7314-PB | 912 | Bmcp-RB | 14..909 | 914..19 | 4455 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bmcp-RB | 1687 | CG7314-RB | 192..1100 | 926..19 | 4505 | 99.8 | Minus |
Bmcp-RA | 1618 | CG7314-RA | 192..1100 | 926..19 | 4505 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11722004..11722418 | 713..299 | 2075 | 100 | Minus |
3L | 28110227 | 3L | 11722588..11722807 | 238..19 | 1100 | 100 | Minus |
3L | 28110227 | 3L | 11721316..11721464 | 861..713 | 745 | 100 | Minus |
3L | 28110227 | 3L | 11722465..11722532 | 305..238 | 310 | 97.1 | Minus |
3L | 28110227 | 3L | 11721125..11721192 | 926..860 | 275 | 97.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:58:28 has no hits.
BO07473.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:43 Download gff for
BO07473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-PA | 1..912 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:21 Download gff for
BO07473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7314-PB | 1..912 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:05:44 Download gff for
BO07473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RA | 184..1100 | 19..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:21:17 Download gff for
BO07473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RA | 184..1100 | 19..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:21:17 Download gff for
BO07473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11721117..11721191 | 861..934 | 92 | -> | Minus |
3L | 11721317..11721464 | 713..860 | 100 | -> | Minus |
3L | 11722005..11722418 | 299..712 | 100 | -> | Minus |
3L | 11722472..11722532 | 238..298 | 100 | -> | Minus |
3L | 11722589..11722807 | 19..237 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:05:44 Download gff for
BO07473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11714217..11714291 | 861..934 | 92 | -> | Minus |
arm_3L | 11714417..11714564 | 713..860 | 100 | -> | Minus |
arm_3L | 11715105..11715518 | 299..712 | 100 | -> | Minus |
arm_3L | 11715572..11715632 | 238..298 | 100 | -> | Minus |
arm_3L | 11715689..11715907 | 19..237 | 100 | | Minus |
BO07473.5prime Sequence
908 bp (824 high quality bases) assembled on 2006-01-06
> BO07473.5prime
GAAGTTATCAGTCGACATGGGTGAAGTGAAGGATTGGCGGCCCTTCGTTT
ACGGCGGAGTCGCCTCAATCACGGCGGAATTTGGCACCTTTCCTATCGAC
ACGACGAAGACGCGCCTCCAAATCCAAGGTCAGAAAATCGACCAATCGTT
CTCGCAGCTGCGATATCGCGGCATGACCGATGCCTTTGTAAAAATCTCCC
GCGAGGAGGGGCTGAGGGCCCTCTATTCCGGTATTTGGCCAGCAGTTTTG
AGACAAGCGACCTATGGCACCATCAAGTTTGGAACCTACTACACCCTGAA
GAAGCTGGCCAACGAACGCGGCTTGCTGATCAACGAGGACGGCAGCGAGC
GTGTGTGGAGCAATATTTTGTGCGCGGCGGCGGCGGGAGCGATCTCTTCG
GCCATTGCTAACCCCACGGACGTGCTGAAAGTGCGAATGCAGGTGCATGG
GAAGGGACAGCACAAGGGCCTGCTGGGCTGCTTCGGTGAGATCTACAAAT
ACGAGGGCGTTCGTGGACTGTGGCGTGGTGTGGGTCCGACGGCTCAGCGT
GCCGTAGTTATCGCCTCCGTTGAGCTGCCCGTCTACGACTTTTGCAAGCT
GCAGTTAATGAATGCCTTCGGAGATCACGTTGGCAATCATTTCATCTCGA
GCTTTATTGCCAGTCTAGGCAGTGCCATTGCCTCAACGCCTATTGATGTA
ATCCGGACGCGCCTGATGAACCAGCGTCCCGTTAGCATAACAATGAATGG
AGTGGTCACGGCAGCAGCCACACCAAAGCTGTATAGCGGCAGCCTAGACT
GTGCTGTACAGACTATCAGGAACGAAGGTCTACCCGCCCTGTACAAAGGT
TTCATTCCCACCTGGGTGAGGATGGGCCCGTGGAATATCATATTTTTTAT
TACCTACG
BO07473.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7314-PA | 912 | Bmcp-RA | 1..892 | 17..908 | 4460 | 100 | Plus |
CG7314-PB | 912 | Bmcp-RB | 1..892 | 17..908 | 4460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bmcp-RB | 1687 | CG7314-RB | 192..1083 | 17..908 | 4460 | 100 | Plus |
Bmcp-RA | 1618 | CG7314-RA | 192..1083 | 17..908 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11722004..11722418 | 231..645 | 2075 | 100 | Plus |
3L | 28110227 | 3L | 11722588..11722790 | 706..908 | 1015 | 100 | Plus |
3L | 28110227 | 3L | 11721316..11721464 | 83..231 | 745 | 100 | Plus |
3L | 28110227 | 3L | 11721125..11721192 | 17..84 | 340 | 100 | Plus |
3L | 28110227 | 3L | 11722465..11722532 | 639..706 | 310 | 97.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:13:57 has no hits.
BO07473.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:44 Download gff for
BO07473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-PA | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:22 Download gff for
BO07473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7314-PB | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:20 Download gff for
BO07473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RA | 189..1083 | 14..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:16 Download gff for
BO07473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RA | 189..1083 | 14..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:16 Download gff for
BO07473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11721119..11721191 | 11..83 | 94 | -> | Plus |
3L | 11721317..11721464 | 84..231 | 100 | -> | Plus |
3L | 11722005..11722418 | 232..645 | 100 | -> | Plus |
3L | 11722472..11722532 | 646..706 | 100 | -> | Plus |
3L | 11722589..11722790 | 707..908 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:20 Download gff for
BO07473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11715689..11715890 | 707..908 | 100 | | Plus |
arm_3L | 11714219..11714291 | 11..83 | 94 | -> | Plus |
arm_3L | 11714417..11714564 | 84..231 | 100 | -> | Plus |
arm_3L | 11715105..11715518 | 232..645 | 100 | -> | Plus |
arm_3L | 11715572..11715632 | 646..706 | 100 | -> | Plus |
BO07473.complete Sequence
943 bp (943 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630801
> BO07473.complete
GAAGTTATCAGTCGACATGGGTGAAGTGAAGGATTGGCGGCCCTTCGTTT
ACGGCGGAGTCGCCTCAATCACGGCGGAATTTGGCACCTTTCCTATCGAC
ACGACGAAGACGCGCCTCCAAATCCAAGGTCAGAAAATCGACCAATCGTT
CTCGCAGCTGCGATATCGCGGCATGACCGATGCCTTTGTAAAAATCTCCC
GCGAGGAGGGGCTGAGGGCCCTCTATTCCGGTATTTGGCCAGCAGTTTTG
AGACAAGCGACCTATGGCACCATCAAGTTTGGAACCTACTACACCCTGAA
GAAGCTGGCCAACGAACGCGGCTTGCTGATCAACGAGGACGGCAGCGAGC
GTGTGTGGAGCAATATTTTGTGCGCGGCGGCGGCGGGAGCGATCTCTTCG
GCCATTGCTAACCCCACGGACGTGCTGAAAGTGCGAATGCAGGTGCATGG
GAAGGGACAGCACAAGGGCCTGCTGGGCTGCTTCGGTGAGATCTACAAAT
ACGAGGGCGTTCGTGGACTGTGGCGTGGTGTGGGTCCGACGGCTCAGCGT
GCCGTAGTTATCGCCTCCGTTGAGCTGCCCGTCTACGACTTTTGCAAGCT
GCAGTTAATGAATGCCTTCGGAGATCACGTTGGCAATCATTTCATCTCGA
GCTTTATTGCCAGTCTAGGCAGTGCCATTGCCTCAACGCCTATTGATGTA
ATCCGGACGCGCCTGATGAACCAGCGTCCCGTTAGCATAACAATGAATGG
AGTGGTCACGGCAGCAGCCACACCAAAGCTGTATAGCGGCAGCCTAGACT
GTGCTGTACAGACTATCAGGAACGAAGGTCTACCCGCCCTGTACAAAGGT
TTCATTCCCACCTGGGTGAGGATGGGCCCGTGGAATATCATATTTTTTAT
TACCTACGAACAACTAAAGAAGTACGCAAGCTTTCTAGACCAT
BO07473.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bmcp-RB | 912 | CG7314-PB | 1..909 | 17..925 | 4545 | 100 | Plus |
Bmcp-RA | 912 | CG7314-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bmcp-RB | 1687 | CG7314-RB | 192..1100 | 17..925 | 4545 | 100 | Plus |
Bmcp-RA | 1618 | CG7314-RA | 192..1100 | 17..925 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11722004..11722418 | 231..645 | 2075 | 100 | Plus |
3L | 28110227 | 3L | 11722588..11722807 | 706..925 | 1100 | 100 | Plus |
3L | 28110227 | 3L | 11721316..11721464 | 83..231 | 745 | 100 | Plus |
3L | 28110227 | 3L | 11721125..11721192 | 17..84 | 340 | 100 | Plus |
3L | 28110227 | 3L | 11722465..11722532 | 639..706 | 310 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:56:20 has no hits.
BO07473.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:22 Download gff for
BO07473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RB | 1..912 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:14 Download gff for
BO07473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RB | 203..1114 | 14..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:48:07 Download gff for
BO07473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RA | 192..1100 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:22 Download gff for
BO07473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RB | 203..1114 | 14..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:36 Download gff for
BO07473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RA | 192..1100 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:36 Download gff for
BO07473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11722589..11722807 | 707..927 | 99 | | Plus |
3L | 11721125..11721191 | 17..83 | 100 | -> | Plus |
3L | 11721317..11721464 | 84..231 | 100 | -> | Plus |
3L | 11722005..11722418 | 232..645 | 100 | -> | Plus |
3L | 11722472..11722532 | 646..706 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:48:07 Download gff for
BO07473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11714225..11714291 | 17..83 | 100 | -> | Plus |
arm_3L | 11714417..11714564 | 84..231 | 100 | -> | Plus |
arm_3L | 11715105..11715518 | 232..645 | 100 | -> | Plus |
arm_3L | 11715572..11715632 | 646..706 | 100 | -> | Plus |
arm_3L | 11715689..11715907 | 707..927 | 99 | | Plus |
BO07473.pep Sequence
Translation from 16 to 943
> BO07473.pep
MGEVKDWRPFVYGGVASITAEFGTFPIDTTKTRLQIQGQKIDQSFSQLRY
RGMTDAFVKISREEGLRALYSGIWPAVLRQATYGTIKFGTYYTLKKLANE
RGLLINEDGSERVWSNILCAAAAGAISSAIANPTDVLKVRMQVHGKGQHK
GLLGCFGEIYKYEGVRGLWRGVGPTAQRAVVIASVELPVYDFCKLQLMNA
FGDHVGNHFISSFIASLGSAIASTPIDVIRTRLMNQRPVSITMNGVVTAA
ATPKLYSGSLDCAVQTIRNEGLPALYKGFIPTWVRMGPWNIIFFITYEQL
KKYASFLDH
BO07473.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bmcp-PB | 303 | CG7314-PB | 1..303 | 1..303 | 1579 | 100 | Plus |
Bmcp-PA | 303 | CG7314-PA | 1..303 | 1..303 | 1579 | 100 | Plus |
Ucp4A-PB | 340 | CG6492-PB | 44..333 | 10..302 | 496 | 36.5 | Plus |
Ucp4A-PA | 340 | CG6492-PA | 44..333 | 10..302 | 496 | 36.5 | Plus |
Ucp4B-PA | 337 | CG18340-PA | 46..331 | 16..303 | 457 | 34.7 | Plus |