Clone BO07473 Report

Search the DGRC for BO07473

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:74
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptBmcp-RA
Protein status:BO07473.pep: validated full length
Sequenced Size:943

Clone Sequence Records

BO07473.3prime Sequence

934 bp (798 high quality bases) assembled on 2006-01-06

> BO07473.3prime
ATGGTCTAGAAAGCTTGCGTACTTCTTTAGTTGTTCGTAGGTAATAAAAA
ATATGATATTCCACGGGCCCATCCTCACCCAGGTGGGAATGAAACCTTTG
TACAGGGCGGGTAGACCTTCGTTCCTGATAGTCTGTACAGCACAGTCTAG
GCTGCCGCTATACAGCTTTGGTGTGGCTGCTGCCGTGACCACTCCATTCA
TTGTTATGCTAACGGGACGCTGGTTCATCAGGCGCGTCCGGATTACATCA
ATAGGCGTTGAGGCAATGGCACTGCCTAGACTGGCAATAAAGCTCGAGAT
GAAATGATTGCCAACGTGATCTCCGAAGGCATTCATTAACTGCAGCTTGC
AAAAGTCGTAGACGGGCAGCTCAACGGAGGCGATAACTACGGCACGCTGA
GCCGTCGGACCCACACCACGCCACAGTCCACGAACGCCCTCGTATTTGTA
GATCTCACCGAAGCAGCCCAGCAGGCCCTTGTGCTGTCCCTTCCCATGCA
CCTGCATTCGCACTTTCAGCACGTCCGTGGGGTTAGCAATGGCCGAAGAG
ATCGCTCCCGCCGCCGCCGCGCACAAAATATTGCTCCACACACGCTCGCT
GCCGTCCTCGTTGATCAGCAAGCCGCGTTCGTTGGCCAGCTTCTTCAGGG
TGTAGTAGGTTCCAAACTTGATGGTGCCATAGGTCGCTTGTCTCAAAACT
GCTGGCCAAATACCGGAATAGAGGGCCCTCAGCCCCTCCTCGCGGGAGAT
TTTTACAAAGGCATCGGTCATGCCGCGATATCGCAGCTGCGAGAACGATT
GGTCGATTTTCTGACCTTGGATTTGGAGGCGCGTCTTCGTCGTGTCGATA
GGAAAGGTGCCAAATTCCGCCGTGATTGAGGCGACTCCGCCGTTAACGAA
GGGCCGCCAATCCTCACTTCACCCATGTCGACTG

BO07473.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7314-PA 912 Bmcp-RA 14..909 914..19 4455 99.8 Minus
CG7314-PB 912 Bmcp-RB 14..909 914..19 4455 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
Bmcp-RB 1687 CG7314-RB 192..1100 926..19 4505 99.8 Minus
Bmcp-RA 1618 CG7314-RA 192..1100 926..19 4505 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11722004..11722418 713..299 2075 100 Minus
3L 28110227 3L 11722588..11722807 238..19 1100 100 Minus
3L 28110227 3L 11721316..11721464 861..713 745 100 Minus
3L 28110227 3L 11722465..11722532 305..238 310 97.1 Minus
3L 28110227 3L 11721125..11721192 926..860 275 97.1 Minus
Blast to na_te.dros performed on 2015-02-13 12:58:28 has no hits.

BO07473.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:43 Download gff for BO07473.3prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-PA 1..912 18..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:21 Download gff for BO07473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7314-PB 1..912 18..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:05:44 Download gff for BO07473.3prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RA 184..1100 19..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:21:17 Download gff for BO07473.3prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RA 184..1100 19..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:21:17 Download gff for BO07473.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11721117..11721191 861..934 92 -> Minus
3L 11721317..11721464 713..860 100 -> Minus
3L 11722005..11722418 299..712 100 -> Minus
3L 11722472..11722532 238..298 100 -> Minus
3L 11722589..11722807 19..237 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:05:44 Download gff for BO07473.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11714217..11714291 861..934 92 -> Minus
arm_3L 11714417..11714564 713..860 100 -> Minus
arm_3L 11715105..11715518 299..712 100 -> Minus
arm_3L 11715572..11715632 238..298 100 -> Minus
arm_3L 11715689..11715907 19..237 100   Minus

BO07473.5prime Sequence

908 bp (824 high quality bases) assembled on 2006-01-06

> BO07473.5prime
GAAGTTATCAGTCGACATGGGTGAAGTGAAGGATTGGCGGCCCTTCGTTT
ACGGCGGAGTCGCCTCAATCACGGCGGAATTTGGCACCTTTCCTATCGAC
ACGACGAAGACGCGCCTCCAAATCCAAGGTCAGAAAATCGACCAATCGTT
CTCGCAGCTGCGATATCGCGGCATGACCGATGCCTTTGTAAAAATCTCCC
GCGAGGAGGGGCTGAGGGCCCTCTATTCCGGTATTTGGCCAGCAGTTTTG
AGACAAGCGACCTATGGCACCATCAAGTTTGGAACCTACTACACCCTGAA
GAAGCTGGCCAACGAACGCGGCTTGCTGATCAACGAGGACGGCAGCGAGC
GTGTGTGGAGCAATATTTTGTGCGCGGCGGCGGCGGGAGCGATCTCTTCG
GCCATTGCTAACCCCACGGACGTGCTGAAAGTGCGAATGCAGGTGCATGG
GAAGGGACAGCACAAGGGCCTGCTGGGCTGCTTCGGTGAGATCTACAAAT
ACGAGGGCGTTCGTGGACTGTGGCGTGGTGTGGGTCCGACGGCTCAGCGT
GCCGTAGTTATCGCCTCCGTTGAGCTGCCCGTCTACGACTTTTGCAAGCT
GCAGTTAATGAATGCCTTCGGAGATCACGTTGGCAATCATTTCATCTCGA
GCTTTATTGCCAGTCTAGGCAGTGCCATTGCCTCAACGCCTATTGATGTA
ATCCGGACGCGCCTGATGAACCAGCGTCCCGTTAGCATAACAATGAATGG
AGTGGTCACGGCAGCAGCCACACCAAAGCTGTATAGCGGCAGCCTAGACT
GTGCTGTACAGACTATCAGGAACGAAGGTCTACCCGCCCTGTACAAAGGT
TTCATTCCCACCTGGGTGAGGATGGGCCCGTGGAATATCATATTTTTTAT
TACCTACG

BO07473.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7314-PA 912 Bmcp-RA 1..892 17..908 4460 100 Plus
CG7314-PB 912 Bmcp-RB 1..892 17..908 4460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
Bmcp-RB 1687 CG7314-RB 192..1083 17..908 4460 100 Plus
Bmcp-RA 1618 CG7314-RA 192..1083 17..908 4460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11722004..11722418 231..645 2075 100 Plus
3L 28110227 3L 11722588..11722790 706..908 1015 100 Plus
3L 28110227 3L 11721316..11721464 83..231 745 100 Plus
3L 28110227 3L 11721125..11721192 17..84 340 100 Plus
3L 28110227 3L 11722465..11722532 639..706 310 97.1 Plus
Blast to na_te.dros performed on 2015-02-12 07:13:57 has no hits.

BO07473.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:19:44 Download gff for BO07473.5prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-PA 1..892 17..908 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:22 Download gff for BO07473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7314-PB 1..892 17..908 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:36:20 Download gff for BO07473.5prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RA 189..1083 14..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:16 Download gff for BO07473.5prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RA 189..1083 14..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:16 Download gff for BO07473.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11721119..11721191 11..83 94 -> Plus
3L 11721317..11721464 84..231 100 -> Plus
3L 11722005..11722418 232..645 100 -> Plus
3L 11722472..11722532 646..706 100 -> Plus
3L 11722589..11722790 707..908 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:36:20 Download gff for BO07473.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11715689..11715890 707..908 100   Plus
arm_3L 11714219..11714291 11..83 94 -> Plus
arm_3L 11714417..11714564 84..231 100 -> Plus
arm_3L 11715105..11715518 232..645 100 -> Plus
arm_3L 11715572..11715632 646..706 100 -> Plus

BO07473.complete Sequence

943 bp (943 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630801

> BO07473.complete
GAAGTTATCAGTCGACATGGGTGAAGTGAAGGATTGGCGGCCCTTCGTTT
ACGGCGGAGTCGCCTCAATCACGGCGGAATTTGGCACCTTTCCTATCGAC
ACGACGAAGACGCGCCTCCAAATCCAAGGTCAGAAAATCGACCAATCGTT
CTCGCAGCTGCGATATCGCGGCATGACCGATGCCTTTGTAAAAATCTCCC
GCGAGGAGGGGCTGAGGGCCCTCTATTCCGGTATTTGGCCAGCAGTTTTG
AGACAAGCGACCTATGGCACCATCAAGTTTGGAACCTACTACACCCTGAA
GAAGCTGGCCAACGAACGCGGCTTGCTGATCAACGAGGACGGCAGCGAGC
GTGTGTGGAGCAATATTTTGTGCGCGGCGGCGGCGGGAGCGATCTCTTCG
GCCATTGCTAACCCCACGGACGTGCTGAAAGTGCGAATGCAGGTGCATGG
GAAGGGACAGCACAAGGGCCTGCTGGGCTGCTTCGGTGAGATCTACAAAT
ACGAGGGCGTTCGTGGACTGTGGCGTGGTGTGGGTCCGACGGCTCAGCGT
GCCGTAGTTATCGCCTCCGTTGAGCTGCCCGTCTACGACTTTTGCAAGCT
GCAGTTAATGAATGCCTTCGGAGATCACGTTGGCAATCATTTCATCTCGA
GCTTTATTGCCAGTCTAGGCAGTGCCATTGCCTCAACGCCTATTGATGTA
ATCCGGACGCGCCTGATGAACCAGCGTCCCGTTAGCATAACAATGAATGG
AGTGGTCACGGCAGCAGCCACACCAAAGCTGTATAGCGGCAGCCTAGACT
GTGCTGTACAGACTATCAGGAACGAAGGTCTACCCGCCCTGTACAAAGGT
TTCATTCCCACCTGGGTGAGGATGGGCCCGTGGAATATCATATTTTTTAT
TACCTACGAACAACTAAAGAAGTACGCAAGCTTTCTAGACCAT

BO07473.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
Bmcp-RB 912 CG7314-PB 1..909 17..925 4545 100 Plus
Bmcp-RA 912 CG7314-PA 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Bmcp-RB 1687 CG7314-RB 192..1100 17..925 4545 100 Plus
Bmcp-RA 1618 CG7314-RA 192..1100 17..925 4545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11722004..11722418 231..645 2075 100 Plus
3L 28110227 3L 11722588..11722807 706..925 1100 100 Plus
3L 28110227 3L 11721316..11721464 83..231 745 100 Plus
3L 28110227 3L 11721125..11721192 17..84 340 100 Plus
3L 28110227 3L 11722465..11722532 639..706 310 97.1 Plus
Blast to na_te.dros performed on 2014-11-27 10:56:20 has no hits.

BO07473.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:22 Download gff for BO07473.complete
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RB 1..912 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:14 Download gff for BO07473.complete
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RB 203..1114 14..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:48:07 Download gff for BO07473.complete
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RA 192..1100 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:22 Download gff for BO07473.complete
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RB 203..1114 14..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:36 Download gff for BO07473.complete
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RA 192..1100 17..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:36 Download gff for BO07473.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11722589..11722807 707..927 99   Plus
3L 11721125..11721191 17..83 100 -> Plus
3L 11721317..11721464 84..231 100 -> Plus
3L 11722005..11722418 232..645 100 -> Plus
3L 11722472..11722532 646..706 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:48:07 Download gff for BO07473.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11714225..11714291 17..83 100 -> Plus
arm_3L 11714417..11714564 84..231 100 -> Plus
arm_3L 11715105..11715518 232..645 100 -> Plus
arm_3L 11715572..11715632 646..706 100 -> Plus
arm_3L 11715689..11715907 707..927 99   Plus

BO07473.pep Sequence

Translation from 16 to 943

> BO07473.pep
MGEVKDWRPFVYGGVASITAEFGTFPIDTTKTRLQIQGQKIDQSFSQLRY
RGMTDAFVKISREEGLRALYSGIWPAVLRQATYGTIKFGTYYTLKKLANE
RGLLINEDGSERVWSNILCAAAAGAISSAIANPTDVLKVRMQVHGKGQHK
GLLGCFGEIYKYEGVRGLWRGVGPTAQRAVVIASVELPVYDFCKLQLMNA
FGDHVGNHFISSFIASLGSAIASTPIDVIRTRLMNQRPVSITMNGVVTAA
ATPKLYSGSLDCAVQTIRNEGLPALYKGFIPTWVRMGPWNIIFFITYEQL
KKYASFLDH

BO07473.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Bmcp-PB 303 CG7314-PB 1..303 1..303 1579 100 Plus
Bmcp-PA 303 CG7314-PA 1..303 1..303 1579 100 Plus
Ucp4A-PB 340 CG6492-PB 44..333 10..302 496 36.5 Plus
Ucp4A-PA 340 CG6492-PA 44..333 10..302 496 36.5 Plus
Ucp4B-PA 337 CG18340-PA 46..331 16..303 457 34.7 Plus